Clc01G25080 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G25080
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionagamous-like MADS-box protein AGL62
LocationClcChr01: 35361193 .. 35362062 (+)
RNA-Seq ExpressionClc01G25080
SyntenyClc01G25080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATAACGCTCAAAATCCTCCATCCCATCCATCTTCAGAAAAGTAACTCTTCTCCTTCTCATGGACTCCGCCGCCCCCGCCGTCGCTGGCAACAAGAAGCAAACAAAGGGACGACAAAAGATCGAAATGAAAAAGATCGTAAACGAAGACGATCGGCTAATAACATTTTCCAAACGGAGGTCAGGCATCTACAAGAAGGCAAGCGAATTAGCTACCTTATGTGGGGCTGAAGTCGGAGTCGTCGTGTTTTCACCTGCCGGAAAACCGTTCTCGTTTGCACATCCATGCATCGAATCCGTCGCAAACAAATTTCTGAACGACGACAAAAACAAGAACAACAACTCAAAGGAGAACAACAACAACAACACCAACAACGCAACACACCCGCTTGTGGAGGCTCACCGACGAGTGAGAATCAACGAGTTGAACCAACAACACAATCAACTTCTAAGCCAGCTAGATGCAGAGAAGGAGAAAGGAAAAGCACTTGAGAAGCTGAAAAAGGTGAGAGGAAATGGGAGAGGTTGGTGGGAAACTCCTGCAGAGGAATTGGGAATAGAGGAGTTGCAAGAAGTTGATGCATCATTAGGAGAGTTGTATCAAAATGTGTGTCATCAATTGAAGCAAAGAGGAGTTATTGGATCTTGTTCTTATAATAATTACAACGACAATCCCTCTATGGGGTTTACTAATGAATTTGGAGAAGAAACAATTCCTTTTAACATTTTGGGAAATGTTCCTCCTCCTTTTCTTCCTCCTCCTTATCTTCCTCCTCATCCTCACTTTGATTTTGGAGGACAACATCAACATCATCATCATCCATGAAGTCCAAAGGGGAGGACCATCAAATTTATCATGTGTGTTTGTG

mRNA sequence

CAAAATAACGCTCAAAATCCTCCATCCCATCCATCTTCAGAAAAGTAACTCTTCTCCTTCTCATGGACTCCGCCGCCCCCGCCGTCGCTGGCAACAAGAAGCAAACAAAGGGACGACAAAAGATCGAAATGAAAAAGATCGTAAACGAAGACGATCGGCTAATAACATTTTCCAAACGGAGGTCAGGCATCTACAAGAAGGCAAGCGAATTAGCTACCTTATGTGGGGCTGAAGTCGGAGTCGTCGTGTTTTCACCTGCCGGAAAACCGTTCTCGTTTGCACATCCATGCATCGAATCCGTCGCAAACAAATTTCTGAACGACGACAAAAACAAGAACAACAACTCAAAGGAGAACAACAACAACAACACCAACAACGCAACACACCCGCTTGTGGAGGCTCACCGACGAGTGAGAATCAACGAGTTGAACCAACAACACAATCAACTTCTAAGCCAGCTAGATGCAGAGAAGGAGAAAGGAAAAGCACTTGAGAAGCTGAAAAAGGTGAGAGGAAATGGGAGAGGTTGGTGGGAAACTCCTGCAGAGGAATTGGGAATAGAGGAGTTGCAAGAAGTTGATGCATCATTAGGAGAGTTGTATCAAAATGTGTGTCATCAATTGAAGCAAAGAGGAGTTATTGGATCTTGTTCTTATAATAATTACAACGACAATCCCTCTATGGGGTTTACTAATGAATTTGGAGAAGAAACAATTCCTTTTAACATTTTGGGAAATGTTCCTCCTCCTTTTCTTCCTCCTCCTTATCTTCCTCCTCATCCTCACTTTGATTTTGGAGGACAACATCAACATCATCATCATCCATGAAGTCCAAAGGGGAGGACCATCAAATTTATCATGTGTGTTTGTG

Coding sequence (CDS)

ATGGACTCCGCCGCCCCCGCCGTCGCTGGCAACAAGAAGCAAACAAAGGGACGACAAAAGATCGAAATGAAAAAGATCGTAAACGAAGACGATCGGCTAATAACATTTTCCAAACGGAGGTCAGGCATCTACAAGAAGGCAAGCGAATTAGCTACCTTATGTGGGGCTGAAGTCGGAGTCGTCGTGTTTTCACCTGCCGGAAAACCGTTCTCGTTTGCACATCCATGCATCGAATCCGTCGCAAACAAATTTCTGAACGACGACAAAAACAAGAACAACAACTCAAAGGAGAACAACAACAACAACACCAACAACGCAACACACCCGCTTGTGGAGGCTCACCGACGAGTGAGAATCAACGAGTTGAACCAACAACACAATCAACTTCTAAGCCAGCTAGATGCAGAGAAGGAGAAAGGAAAAGCACTTGAGAAGCTGAAAAAGGTGAGAGGAAATGGGAGAGGTTGGTGGGAAACTCCTGCAGAGGAATTGGGAATAGAGGAGTTGCAAGAAGTTGATGCATCATTAGGAGAGTTGTATCAAAATGTGTGTCATCAATTGAAGCAAAGAGGAGTTATTGGATCTTGTTCTTATAATAATTACAACGACAATCCCTCTATGGGGTTTACTAATGAATTTGGAGAAGAAACAATTCCTTTTAACATTTTGGGAAATGTTCCTCCTCCTTTTCTTCCTCCTCCTTATCTTCCTCCTCATCCTCACTTTGATTTTGGAGGACAACATCAACATCATCATCATCCATGA

Protein sequence

MDSAAPAVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQRGVIGSCSYNNYNDNPSMGFTNEFGEETIPFNILGNVPPPFLPPPYLPPHPHFDFGGQHQHHHHP
Homology
[Close]
BLAST of Clc01G25080 vs. NCBI nr
Match: XP_038881522.1 (agamous-like MADS-box protein AGL61 [Benincasa hispida])

HSP 1 Score: 412.5 bits (1059), Expect = 2.6e-111
Identity = 222/276 (80.43%), Postives = 232/276 (84.06%), Query Frame = 0 

Query: 1   MDSAAP--AVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDSAAP  A AG KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSAAPNAATAGKKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIESVANKFL----------NDDKNKNNNSKENNNNNTN---- 120
           GVVVFSPAGKPFSFAHPCIESVANKFL          N+DK+ NNN   NNN+N N    
Sbjct: 61  GVVVFSPAGKPFSFAHPCIESVANKFLNNDNKNNKGNNNDKDDNNNDDNNNNDNDNPDNN 120

Query: 121 --NATHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPAE 180
             NATHPLVEAHRRVRINELNQQHNQ+LSQLD EKE+GK LE LKKVRGNGRGWWETP E
Sbjct: 121 NINATHPLVEAHRRVRINELNQQHNQILSQLDGEKERGKTLENLKKVRGNGRGWWETPTE 180

Query: 181 ELGIEELQEVDASLGELYQNVCHQLKQRGVIGSCSYNNYNDNPSMGFTNEFGEETIPFNI 240
           ELGIEEL+EVDAS GELYQNVC QLKQRG+IG CSY +Y++N SMGFT   GEETIPFNI
Sbjct: 181 ELGIEELEEVDASFGELYQNVCDQLKQRGIIGPCSYKHYDNNSSMGFTINVGEETIPFNI 240

Query: 241 LGNVPPPFL-PPPYL---PPHPHFDFGGQHQHHHHP 255
           LGNVP PFL PPPYL   PP PHFDFGGQHQ HHHP
Sbjct: 241 LGNVPSPFLPPPPYLIPPPPPPHFDFGGQHQQHHHP 276

[Close]
BLAST of Clc01G25080 vs. NCBI nr
Match: XP_011658286.1 (agamous-like MADS-box protein AGL29 [Cucumis sativus])

HSP 1 Score: 401.4 bits (1030), Expect = 5.9e-108
Identity = 221/284 (77.82%), Postives = 233/284 (82.04%), Query Frame = 0 

Query: 1   MDSAAP--AVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDS+AP   VAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSAPNAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIESVANKFLNDDKN----------------KNNNSKENNNNN 120
           GVVVFSPAGKPFSFAHPCIE++ANKFLN +KN                 NNN+  +NNNN
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNKNNKGNNDDNNNNGDSSSSNNNNNNSNNNN 120

Query: 121 TNNATHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPAE 180
            +NA HPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLK+VRGNGRGWWETP E
Sbjct: 121 NSNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTE 180

Query: 181 ELGIEELQEVDASLGELYQNVCHQLKQRGVIGSCSYNNYN---DNPSMGF---TNEFGEE 240
           ELGIEELQEVDAS GE+Y NVCHQLKQRGVIG CSYNNYN   +N SMGF    ++ GEE
Sbjct: 181 ELGIEELQEVDASFGEIYSNVCHQLKQRGVIGCCSYNNYNNNMNNSSMGFPLTNDQLGEE 240

Query: 241 TIPFNIL-GNVPPPFL----PPPYLPPHPHFDFGGQHQH-HHHP 255
           TIPFNIL GNVPPP      PPPYLPP P FDFG Q QH H HP
Sbjct: 241 TIPFNILAGNVPPPLFPLPPPPPYLPPPPQFDFGEQQQHPHPHP 284

[Close]
BLAST of Clc01G25080 vs. NCBI nr
Match: KAG6594479.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026476.1 Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.6 bits (836), Expect = 1.9e-85
Identity = 183/252 (72.62%), Postives = 198/252 (78.57%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
           AHPCIESVANKFL+++   N+N            THPLVEAHRR+RINELNQQHNQLLSQ
Sbjct: 69  AHPCIESVANKFLDENPQPNDN------------THPLVEAHRRLRINELNQQHNQLLSQ 128

Query: 133 LDAEKEKGKALEKLKKVRG-NGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQRG 192
           LDAEKEKGKALEKLKKVRG NGRGWWE+P EELGIEELQ+VD SLGELYQNVCH+LK+RG
Sbjct: 129 LDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERG 188

Query: 193 VIGSCSYNNYNDNPSMGFTNEFGEETIPFNILGNVPPPFLPP---PYLPPHPHFDFGGQ- 252
           V+GS SY+  N   ++GF +   EETIPFNIL         P    YLP    FD+G Q 
Sbjct: 189 VLGSSSYSASN---TLGFDHAGREETIPFNILATGAAAAAGPSSATYLPDPNPFDYGQQP 245

Query: 253 -----HQHHHHP 255
                H HHHHP
Sbjct: 249 QPHLPHHHHHHP 245

[Close]
BLAST of Clc01G25080 vs. NCBI nr
Match: XP_023518350.1 (agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 5.4e-85
Identity = 182/253 (71.94%), Postives = 198/253 (78.26%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
           AHPCIESVANKFL+++   N+N            THPLVEAHRR+RINELNQQHNQLLSQ
Sbjct: 69  AHPCIESVANKFLDENPQPNDN------------THPLVEAHRRLRINELNQQHNQLLSQ 128

Query: 133 LDAEKEKGKALEKLKKVRG-NGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQRG 192
           LDAEKEKGKALEKLKKVRG NGRGWWE+P EELGI+ELQ+VD SLGELYQNVCH+LK+RG
Sbjct: 129 LDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIDELQQVDGSLGELYQNVCHELKERG 188

Query: 193 VIGSCSYNNYNDNPSMGFTNEFGEETIPFNILGNVPPPFLPPP----YLPPHPHFDFGGQ 252
           V+GS SY+  N   ++GF +   EETIPFNIL          P    YLP    FD+G Q
Sbjct: 189 VLGSSSYSASN---TLGFDHAGREETIPFNILATGAAAAAAGPSSATYLPDPNPFDYGQQ 246

Query: 253 ------HQHHHHP 255
                 H HHHHP
Sbjct: 249 PQPHLPHHHHHHP 246

[Close]
BLAST of Clc01G25080 vs. NCBI nr
Match: XP_022926768.1 (agamous-like MADS-box protein AGL61 [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 9.2e-85
Identity = 184/254 (72.44%), Postives = 199/254 (78.35%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 52  KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 111

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
           AHPCIESVANKFL+++   N+N            THPLVEAHRR+RINELNQQHNQLLSQ
Sbjct: 112 AHPCIESVANKFLDENPQPNDN------------THPLVEAHRRLRINELNQQHNQLLSQ 171

Query: 133 LDAEKEKGKALEKLKKVRG-NGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQRG 192
           LDAEKEKGKALEKLKKVRG NGRGWWE+P EELGIEELQ+VD SLGELYQNVCH+LK+RG
Sbjct: 172 LDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERG 231

Query: 193 VIGSCSYNNYNDNPSMGFTNEFGEETIPFNIL--GNVPPPFLPP---PYLPPHPHFDFGG 252
           V+GS SY+  N   ++GF +   EETIPFNIL  G        P    YLP    FD+G 
Sbjct: 232 VLGSSSYSASN---TLGFDHAGREETIPFNILATGAAAAAAAGPSSATYLPDPNPFDYGQ 290

Query: 253 Q------HQHHHHP 255
           Q      H HHHHP
Sbjct: 292 QQQPHLPHHHHHHP 290

[Close]
BLAST of Clc01G25080 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-29
Identity = 83/195 (42.56%), Postives = 120/195 (61.54%), Query Frame = 0 

Query: 12  KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 71
           KK++ GRQKI M KI  E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KPFS
Sbjct: 58  KKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFS 117

Query: 72  FAHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLS 131
           F HP +ESV ++++    ++NN S   +     +   P           ELN Q   +LS
Sbjct: 118 FGHPSVESVLDRYV----SRNNMSLAQSQQLQGS---PAASC-------ELNMQLTHILS 177

Query: 132 QLDAEKEKGKALEKLKK--VRGNGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQ 191
           +++ EK+KG+A+E+++K  VR +   WWE P EE+ + +LQE+  +L EL + V      
Sbjct: 178 EVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV------ 230

Query: 192 RGVIGSCSYNNYNDN 205
             V    S+N   D+
Sbjct: 238 --VTNMASFNEAKDD 230

[Close]
BLAST of Clc01G25080 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.7e-29
Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           K++KGRQKIEM K+ NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FSF
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
            HP ++SV ++F+N     NN    + +NN       L E  R   + +LN    Q+LSQ
Sbjct: 63  GHPNVDSVIDRFIN-----NNPLPPHQHNNMQ-----LRETRRNSIVQDLNNHLTQVLSQ 122

Query: 133 LDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEELQEVDASLGEL 180
           L+ EK+K   L+K+++       WWE P EEL + +L+    +L  L
Sbjct: 123 LETEKKKYDELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENL 159

[Close]
BLAST of Clc01G25080 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-19
Identity = 61/156 (39.10%), Postives = 100/156 (64.10%), Query Frame = 0 

Query: 17  GRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSFAHPC 76
           GR+KI+M+ + + + R +TFSKRR+G++KKASELATLC AE+G+VVFSP GKPFS+  P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 77  IESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQLDAE 136
           ++SVA +F+ +  + ++  +E + N              R ++  L+++ + L  +++AE
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGN-------------YRPKLKRLSERLDLLNQEVEAE 121

Query: 137 KEKG-KALEKLKKVRGNGRGWWETPAEELGIEELQE 172
           KE+G K+ EKL+     G   ++   E L ++EL E
Sbjct: 122 KERGEKSQEKLESA---GDERFKESIETLTLDELNE 141

[Close]
BLAST of Clc01G25080 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-19
Identity = 68/234 (29.06%), Postives = 120/234 (51.28%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           ++  GR+KIE+ K+ NE +  +TFSKRRSG++KK SEL TLC AE+ ++VFSP+GK +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
            HP +    NK L+     ++  +   +NNTN A     E+  ++RI  LN+   +++++
Sbjct: 63  GHPNV----NKLLD-----HSLGRVIRHNNTNFA-----ESRTKLRIQMLNESLTEVMAE 122

Query: 133 LDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQ--- 192
            + E+E  +++ + ++   +   WW     EL + +   +   L  L + V  ++ Q   
Sbjct: 123 KEKEQETKQSIVQNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHH 182

Query: 193 ----------RGVIGSCSYNNYNDNPSMGFTNEFGEET------IPFNILGNVP 228
                       V    + +  N + + GF ++ G  T        FN++   P
Sbjct: 183 RNLNFYVGSSSNVAAPAAVSGGNISTNHGFFDQNGNSTSAPTLPFGFNVMNRTP 222

[Close]
BLAST of Clc01G25080 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-18
Identity = 66/236 (27.97%), Postives = 121/236 (51.27%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           K+T GR+K+E+ K+  E +  +TFSKR++G++KKASE  TLC A++ ++VFSPAGK FSF
Sbjct: 3   KKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSF 62

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
            HP ++ + + F               +NNTN     L E++ ++ +  LN+ + ++ ++
Sbjct: 63  GHPNVDVLLDHF---------RGCVVGHNNTN-----LDESYTKLHVQMLNKSYTEVKAE 122

Query: 133 LDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEE-------LQEVDASLGELYQNVCH 192
           ++ E++  ++  + ++   N   WW     EL + +       L+++   + E    + H
Sbjct: 123 VEKEQKNKQSRAQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIH 182

Query: 193 QLKQRGVIGSCS-------YNNYNDNPSMGFTNEFGEETIP-------FNILGNVP 228
           Q      +GS S        +  N + + GF ++ G  T P       F+I+   P
Sbjct: 183 QTNPNFYVGSSSNAAAPATVSGGNISTNQGFFDQNGMTTNPTQTLLFGFDIMNRTP 224

[Close]
BLAST of Clc01G25080 vs. ExPASy TrEMBL
Match: A0A0A0KNT7 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522745 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.9e-108
Identity = 221/284 (77.82%), Postives = 233/284 (82.04%), Query Frame = 0 

Query: 1   MDSAAP--AVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDS+AP   VAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSAPNAPVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIESVANKFLNDDKN----------------KNNNSKENNNNN 120
           GVVVFSPAGKPFSFAHPCIE++ANKFLN +KN                 NNN+  +NNNN
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLNGNKNNKGNNDDNNNNGDSSSSNNNNNNSNNNN 120

Query: 121 TNNATHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPAE 180
            +NA HPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLK+VRGNGRGWWETP E
Sbjct: 121 NSNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKRVRGNGRGWWETPTE 180

Query: 181 ELGIEELQEVDASLGELYQNVCHQLKQRGVIGSCSYNNYN---DNPSMGF---TNEFGEE 240
           ELGIEELQEVDAS GE+Y NVCHQLKQRGVIG CSYNNYN   +N SMGF    ++ GEE
Sbjct: 181 ELGIEELQEVDASFGEIYSNVCHQLKQRGVIGCCSYNNYNNNMNNSSMGFPLTNDQLGEE 240

Query: 241 TIPFNIL-GNVPPPFL----PPPYLPPHPHFDFGGQHQH-HHHP 255
           TIPFNIL GNVPPP      PPPYLPP P FDFG Q QH H HP
Sbjct: 241 TIPFNILAGNVPPPLFPLPPPPPYLPPPPQFDFGEQQQHPHPHP 284

[Close]
BLAST of Clc01G25080 vs. ExPASy TrEMBL
Match: A0A6J1EJ54 (agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC111433790 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.5e-85
Identity = 184/254 (72.44%), Postives = 199/254 (78.35%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 52  KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 111

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
           AHPCIESVANKFL+++   N+N            THPLVEAHRR+RINELNQQHNQLLSQ
Sbjct: 112 AHPCIESVANKFLDENPQPNDN------------THPLVEAHRRLRINELNQQHNQLLSQ 171

Query: 133 LDAEKEKGKALEKLKKVRG-NGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQRG 192
           LDAEKEKGKALEKLKKVRG NGRGWWE+P EELGIEELQ+VD SLGELYQNVCH+LK+RG
Sbjct: 172 LDAEKEKGKALEKLKKVRGNNGRGWWESPTEELGIEELQQVDGSLGELYQNVCHELKERG 231

Query: 193 VIGSCSYNNYNDNPSMGFTNEFGEETIPFNIL--GNVPPPFLPP---PYLPPHPHFDFGG 252
           V+GS SY+  N   ++GF +   EETIPFNIL  G        P    YLP    FD+G 
Sbjct: 232 VLGSSSYSASN---TLGFDHAGREETIPFNILATGAAAAAAAGPSSATYLPDPNPFDYGQ 290

Query: 253 Q------HQHHHHP 255
           Q      H HHHHP
Sbjct: 292 QQQPHLPHHHHHHP 290

[Close]
BLAST of Clc01G25080 vs. ExPASy TrEMBL
Match: A0A6J1KP08 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111496989 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.2e-84
Identity = 183/254 (72.05%), Postives = 198/254 (77.95%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           KQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF
Sbjct: 9   KQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
           AHPCIESVANKFL+++   N+N            THPLVEAHRR+RINELNQQHNQLLSQ
Sbjct: 69  AHPCIESVANKFLDENPQPNDN------------THPLVEAHRRLRINELNQQHNQLLSQ 128

Query: 133 LDAEKEKGKALEKLKKVRG-NGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQRG 192
           LDAEKEKGKALEKLKKVRG NGRGWWE+P EEL IEELQ+VD SLGELYQNVCH+LK+RG
Sbjct: 129 LDAEKEKGKALEKLKKVRGNNGRGWWESPTEELAIEELQQVDGSLGELYQNVCHELKERG 188

Query: 193 VIGSCSYNNYNDNPSMGFTNEFGEETIPFNIL--GNVPPPFLPP---PYLPPHPHFDFGG 252
           V+GS SY+  N   ++GF +   EETIPFNIL  G        P    YLP    FD+G 
Sbjct: 189 VLGSSSYSASN---TLGFDHAGREETIPFNILATGAAAASAAGPSSATYLPDPNPFDYGQ 247

Query: 253 Q------HQHHHHP 255
           Q      H HHHHP
Sbjct: 249 QPQPHLPHHHHHHP 247

[Close]
BLAST of Clc01G25080 vs. ExPASy TrEMBL
Match: A0A6J1CYR8 (agamous-like MADS-box protein AGL61 OS=Momordica charantia OX=3673 GN=LOC111015822 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.2e-82
Identity = 177/236 (75.00%), Postives = 192/236 (81.36%), Query Frame = 0 

Query: 12  KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 71
           KKQTKGRQKIEMKKI NEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS
Sbjct: 4   KKQTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 63

Query: 72  FAHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLS 131
           FAHP IESVANKF+N+    N+N            THPLVEAHRRVRINELNQQHNQLLS
Sbjct: 64  FAHPSIESVANKFINETPQPNDN------------THPLVEAHRRVRINELNQQHNQLLS 123

Query: 132 QLDAEKEKGKALEKLKKVRG--NGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQ 191
           QL+AEKEKGKALEK+KKVRG  NGRGWWETP EE+G+EELQ+VDASLG+LY NVCHQL++
Sbjct: 124 QLEAEKEKGKALEKMKKVRGNSNGRGWWETPTEEMGMEELQQVDASLGDLYTNVCHQLRE 183

Query: 192 RGVIGSCSYNNYNDNPSMGFTNEFGEETIPFNILGNVPPPFLPPPYLPPHPHFDFG 246
           RGVIGS S ++Y+  P     N  GEETIPFNIL N PPP  P     PH  FD+G
Sbjct: 184 RGVIGSSS-SSYSSMP----FNGAGEETIPFNILANGPPP--PTNAYLPHA-FDYG 219

[Close]
BLAST of Clc01G25080 vs. ExPASy TrEMBL
Match: A0A5A7UFR8 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008890 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 9.0e-78
Identity = 163/201 (81.09%), Postives = 171/201 (85.07%), Query Frame = 0 

Query: 1   MDSAAP--AVAGNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60
           MDS+ P   VA NKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV
Sbjct: 1   MDSSTPIAPVASNKKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEV 60

Query: 61  GVVVFSPAGKPFSFAHPCIESVANKFLNDDKNKNNNSKENNNNN---------------- 120
           GVVVFSPAGKPFSFAHPCIE++ANKFLN DKNKN  +K++NNNN                
Sbjct: 61  GVVVFSPAGKPFSFAHPCIETIANKFLN-DKNKNKGNKDDNNNNDDSSSSSNNNSNNNIS 120

Query: 121 -TNNATHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPA 180
             NNA HPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETP 
Sbjct: 121 INNNAAHPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALEKLKKVRGNGRGWWETPT 180

Query: 181 EELGIEELQEVDASLGELYQN 183
           EELGI+ELQEVDAS GE+Y N
Sbjct: 181 EELGIDELQEVDASFGEIYSN 200

[Close]
BLAST of Clc01G25080 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-30
Identity = 83/195 (42.56%), Postives = 120/195 (61.54%), Query Frame = 0 

Query: 12  KKQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFS 71
           KK++ GRQKI M KI  E  R +TFSKRR+G++KKASEL TLCGAE+G++VFSPA KPFS
Sbjct: 58  KKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFS 117

Query: 72  FAHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLS 131
           F HP +ESV ++++    ++NN S   +     +   P           ELN Q   +LS
Sbjct: 118 FGHPSVESVLDRYV----SRNNMSLAQSQQLQGS---PAASC-------ELNMQLTHILS 177

Query: 132 QLDAEKEKGKALEKLKK--VRGNGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQ 191
           +++ EK+KG+A+E+++K  VR +   WWE P EE+ + +LQE+  +L EL + V      
Sbjct: 178 EVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV------ 230

Query: 192 RGVIGSCSYNNYNDN 205
             V    S+N   D+
Sbjct: 238 --VTNMASFNEAKDD 230

[Close]
BLAST of Clc01G25080 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 128.6 bits (322), Expect = 6.9e-30
Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           K++KGRQKIEM K+ NE +  +TFSKRRSG++KKASEL TLCGAEV +VVFSP  K FSF
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
            HP ++SV ++F+N     NN    + +NN       L E  R   + +LN    Q+LSQ
Sbjct: 63  GHPNVDSVIDRFIN-----NNPLPPHQHNNMQ-----LRETRRNSIVQDLNNHLTQVLSQ 122

Query: 133 LDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEELQEVDASLGEL 180
           L+ EK+K   L+K+++       WWE P EEL + +L+    +L  L
Sbjct: 123 LETEKKKYDELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENL 159

[Close]
BLAST of Clc01G25080 vs. TAIR 10
Match: AT3G04100.1 (AGAMOUS-like 57 )

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-25
Identity = 68/175 (38.86%), Postives = 110/175 (62.86%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           ++TKG+QKIEMKK+ N  DR+ITFSKR++GI+KK +EL  +C  EV  ++FS   KP++F
Sbjct: 10  RKTKGKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTF 69

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
           AHP ++ VA      D+ KN + +E    +    T PLVEA+++ R+++L ++   L  +
Sbjct: 70  AHPSMKKVA------DRLKNPSRQEPLERDD---TRPLVEAYKKRRLHDLVKKMEALEEE 129

Query: 133 LDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEELQEVDASLGELYQNVCHQL 188
           L  + EK K L++ +  +   + WW  P+E L  +ELQ+   ++ EL  N+C  +
Sbjct: 130 LAMDLEKLKLLKESRNEKKLDKMWWNFPSEGLSAKELQQRYQAMLELRDNLCDNM 175

[Close]
BLAST of Clc01G25080 vs. TAIR 10
Match: AT4G36590.1 (MADS-box transcription factor family protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-25
Identity = 80/222 (36.04%), Postives = 120/222 (54.05%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           + TKGRQKIEMKK+ NE +  +TFSKRR G++KKASEL TL GAE+ ++VFSP GK FSF
Sbjct: 3   RSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSF 62

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
            HP ++ + ++F N   N N+    + NNN       LVE      I  LN    ++L+ 
Sbjct: 63  GHPSVQELIHRFSN--PNHNSAIVHHQNNNLQ-----LVETRPDRNIQYLNNILTEVLAN 122

Query: 133 LDAEKEKGKALEKLKKVRGNGRGWWETPAEELGIEELQEVDASLGELYQNVCHQLKQ--- 192
            + EK+K   L+ LK+ R     W+E   ++L + E  ++ ++L ++ + +  ++ Q   
Sbjct: 123 QEKEKQKRMVLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQYSQ 182

Query: 193 -----------RGVIGSCSY---------NNYNDNPSMGFTN 212
                       GVIG  +          N +N NP+M F N
Sbjct: 183 VNVSQNYFGQSSGVIGGGNVGIDLFDQRRNAFNYNPNMVFPN 217

[Close]
BLAST of Clc01G25080 vs. TAIR 10
Match: AT1G29962.1 (AGAMOUS-like 64 )

HSP 1 Score: 108.6 bits (270), Expect = 7.4e-24
Identity = 67/190 (35.26%), Postives = 114/190 (60.00%), Query Frame = 0 

Query: 13  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 72
           K+TKG+Q+I +KKI  ++DRL+T SKRR+GIY K SEL+ LCGAEV  + +S +GKP++F
Sbjct: 4   KKTKGKQRINIKKIEKDEDRLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPYTF 63

Query: 73  AHPCIESVANKFLNDDKNKNNNSKENNNNNTNNATHPLVEAHRRVRINELNQQHNQLLSQ 132
             P  ++VA +FLN          E +++++++    ++ AH++ +I EL + +N+L+ +
Sbjct: 64  GSPSFQAVAERFLNG---------EASSSSSSSLQRSVMNAHQQAKIQELCKVYNRLVEE 123

Query: 133 LDAEKEKGKALEKLKKVRG-NGRGWWET-PAEELGIEELQEVDASLGELYQNVCHQLKQR 192
           +  E+ K K    L ++   N   WW+  P +    EE++++     ELY+ +C +   R
Sbjct: 124 ITVEEVKLKKTAALAEMMPMNEDAWWKVDPNDVKDREEVKKMMEKHQELYEKLCEEAASR 183

Query: 193 GVIGSCSYNN 201
              G    NN
Sbjct: 184 IKRGHDENNN 184

The following BLAST results are available for this feature:
BLAST of Clc01G25080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881522.12.6e-11180.43agamous-like MADS-box protein AGL61 [Benincasa hispida][more]
XP_011658286.15.9e-10877.82agamous-like MADS-box protein AGL29 [Cucumis sativus][more]
KAG6594479.11.9e-8572.62Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_023518350.15.4e-8571.94agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo][more]
XP_022926768.19.2e-8572.44agamous-like MADS-box protein AGL61 [Cucurbita moschata][more]
BLAST of Clc01G25080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4PSU42.0e-2942.56Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=... [more]
Q9FKK29.7e-2946.11Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=... [more]
O647033.1e-1939.10Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=... [more]
Q9LMM87.0e-1929.06Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=... [more]
O808071.6e-1827.97Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=... [more]
BLAST of Clc01G25080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNT72.9e-10877.82MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522745 PE... [more]
A0A6J1EJ544.5e-8572.44agamous-like MADS-box protein AGL61 OS=Cucurbita moschata OX=3662 GN=LOC11143379... [more]
A0A6J1KP082.2e-8472.05agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111496989 ... [more]
A0A6J1CYR81.2e-8275.00agamous-like MADS-box protein AGL61 OS=Momordica charantia OX=3673 GN=LOC1110158... [more]
A0A5A7UFR89.0e-7881.09Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Clc01G25080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24840.11.4e-3042.56AGAMOUS-like 61 [more]
AT5G60440.16.9e-3046.11AGAMOUS-like 62 [more]
AT3G04100.11.8e-2538.86AGAMOUS-like 57 [more]
AT4G36590.11.8e-2536.04MADS-box transcription factor family protein [more]
AT1G29962.17.4e-2435.26AGAMOUS-like 64 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..139
NoneNo IPR availableCOILSCoilCoilcoord: 86..106
NoneNo IPR availableGENE3D6.10.140.920coord: 109..190
e-value: 5.2E-7
score: 31.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..107
NoneNo IPR availablePANTHERPTHR11945:SF648BOX PROTEIN, PUTATIVE-RELATEDcoord: 15..202
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 15..202
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 18..38
score: 47.34
coord: 53..74
score: 43.8
coord: 38..53
score: 61.67
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 16..75
e-value: 6.3E-29
score: 112.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 25..72
e-value: 3.0E-22
score: 77.9
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 16..76
score: 24.305532
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 28..108
e-value: 3.1E-24
score: 86.9
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 17..98
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 17..85
e-value: 4.76305E-32
score: 110.72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G25080.1Clc01G25080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding