Clc01G23080 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G23080
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CHCH domain-containing protein
Location	ClcChr01: 33957407 .. 33957930 (+)
RNA-Seq Expression	Clc01G23080
Synteny	Clc01G23080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTTCACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGGTTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCGTATAATCTCTGTTTCTGGTCTTTTTGAATACACATGTTGCCTTAATCCTCAATTATTATTGAAGCTGTTGGTTGTGTTTGTGTAGATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA

mRNA sequence

ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTTCACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGGTTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA

Coding sequence (CDS)

ATGATCTCACTCAAACCCTCCACTCACCACAATGGATCCTCATTCCCTTACAATTATTCTTTAAATCTTCAACAGAATCCCATTCCAATCATTAGAATTAAGCCCAATTTCACACCTGAATTCCACAGCAGAACAACCTTCAGAACCCGCGCCGAACAACCCGGATCAGGCAACGGCGCTGAAAGACGGACTTTCTTGACCATCGAAGAAGCCGGTCTGGTTGAAGTATCCGGCCTCGGCACGCACGAACGATTTCTCTGTCGTTTAACCATATCGTCCCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGGAATGTTCCATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGACGATTCTGACCCTCTCTTCTGA

Protein sequence

MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

Homology

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BLAST of Clc01G23080 vs. NCBI nr
Match: XP_038881387.1 (uncharacterized protein LOC120072922 [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 131/148 (88.51%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIP-IIRIKPNFTPEFHSR-TTFRTRAEQPG-SG 60
           MISL PSTHHNGSSF YN S NLQQN IP IIRIKPNF P FH++ TTFRT+AEQ G SG
Sbjct: 1   MISLNPSTHHNGSSFHYN-SSNLQQNFIPTIIRIKPNFAPPFHTKTTTFRTQAEQAGSSG 60

Query: 61  NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLC 120
           NGA+RRTFLTIEEAGLVEVSGL THERFLCRLTISSLNLLRVIAEEE+CSIEELNAGRLC
Sbjct: 61  NGAQRRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLC 120

Query: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 146
           DWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 147

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BLAST of Clc01G23080 vs. NCBI nr
Match: XP_004134733.1 (uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical protein Csa_002941 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 6.5e-59
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSG 60
           MISLKPSTHHNG  +SFPYN S   QQNPIPIIRI KPNF+   H++TTFRT A+  GSG
Sbjct: 1   MISLKPSTHHNGFDTSFPYN-SSKFQQNPIPIIRITKPNFS---HTKTTFRTHAQPSGSG 60

Query: 61  NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLC 120
            G ++RTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLC
Sbjct: 61  KGPQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLC 120

Query: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 146
           DWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of Clc01G23080 vs. NCBI nr
Match: XP_022977984.1 (uncharacterized protein LOC111478111 [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 119/145 (82.07%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
           MISLKPS HHNGSSF  N S NL Q   PI R++ NF P F ++TTFR RAEQ  SGNGA
Sbjct: 1   MISLKPSPHHNGSSFLSN-SSNLHQKLNPITRLRSNFPPPFRTKTTFRIRAEQAESGNGA 60

Query: 61  ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
           +RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61  QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120

Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
           LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144

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BLAST of Clc01G23080 vs. NCBI nr
Match: XP_023544671.1 (uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 4.2e-58
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
           MISLKPS HHNGSSF +N S NL Q   PI R + NF P F ++TTF+ RAEQ  SGNGA
Sbjct: 1   MISLKPSPHHNGSSFLFN-SSNLHQKLSPITRHRSNFPPPFRTKTTFKIRAEQAESGNGA 60

Query: 61  ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
           +RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61  QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120

Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
           LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144

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BLAST of Clc01G23080 vs. NCBI nr
Match: XP_022949732.1 (uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothetical protein SDJN03_04335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033905.1 hypothetical protein SDJN02_03630 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.9 bits (590), Expect = 3.6e-57
Identity = 118/145 (81.38%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
           MISLKPS HHNGSSF  N S NL Q   PI R + NF P   ++TTFR RAEQ  SGNGA
Sbjct: 1   MISLKPSPHHNGSSFLSN-SSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGA 60

Query: 61  ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
           +RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61  QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120

Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
           LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144

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BLAST of Clc01G23080 vs. ExPASy TrEMBL
Match: A0A0A0KHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.1e-59
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MISLKPSTHHNG--SSFPYNYSLNLQQNPIPIIRI-KPNFTPEFHSRTTFRTRAEQPGSG 60
           MISLKPSTHHNG  +SFPYN S   QQNPIPIIRI KPNF+   H++TTFRT A+  GSG
Sbjct: 1   MISLKPSTHHNGFDTSFPYN-SSKFQQNPIPIIRITKPNFS---HTKTTFRTHAQPSGSG 60

Query: 61  NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLC 120
            G ++RTFLTIEEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLC
Sbjct: 61  KGPQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLC 120

Query: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 146
           DWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 DWFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of Clc01G23080 vs. ExPASy TrEMBL
Match: A0A6J1ISV2 (uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 119/145 (82.07%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
           MISLKPS HHNGSSF  N S NL Q   PI R++ NF P F ++TTFR RAEQ  SGNGA
Sbjct: 1   MISLKPSPHHNGSSFLSN-SSNLHQKLNPITRLRSNFPPPFRTKTTFRIRAEQAESGNGA 60

Query: 61  ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
           +RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61  QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120

Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
           LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of Clc01G23080 vs. ExPASy TrEMBL
Match: A0A6J1GCY7 (uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC111453037 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 118/145 (81.38%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPEFHSRTTFRTRAEQPGSGNGA 60
           MISLKPS HHNGSSF  N S NL Q   PI R + NF P   ++TTFR RAEQ  SGNGA
Sbjct: 1   MISLKPSPHHNGSSFLSN-SSNLHQKLSPITRHRSNFPPPLRTKTTFRIRAEQAESGNGA 60

Query: 61  ERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRLCDWF 120
           +RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLL+VIAEEE+CSIEELNAGRLCDWF
Sbjct: 61  QRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWF 120

Query: 121 LKDKLKREQNLDSAVLQWDDSDPLF 146
           LKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 LKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of Clc01G23080 vs. ExPASy TrEMBL
Match: A0A6J1CKG5 (uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012432 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.6e-45
Identity = 107/149 (71.81%), Postives = 113/149 (75.84%), Query Frame = 0


Query: 1   MISLKPSTHHNGSSFPYNYSLNLQQNPIPIIRIKPNFTPE-FHSRTTFR---TRAEQPGS 60
           MISL P  + NGSSFP+  S  L   PIP     P  T      +  FR    RAEQ G 
Sbjct: 1   MISLGPCAYQNGSSFPFYSSNLLNLRPIPSNFALPLPTNSIILGKRNFRFRVVRAEQAG- 60

Query: 61  GNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNAGRL 120
           GN A+RRTFLT+EEAGLVEVSGL THERFLCRLTISSLNLLRVIAEEE+CSIEELNAGRL
Sbjct: 61  GNSAQRRTFLTVEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRL 120

Query: 121 CDWFLKDKLKREQNLDSAVLQWDDSDPLF 146
           CDWFLKDKLKREQNLDSAVLQWDDSD  F
Sbjct: 121 CDWFLKDKLKREQNLDSAVLQWDDSDLTF 148

[Close]

BLAST of Clc01G23080 vs. ExPASy TrEMBL
Match: A0A6P4A1U2 (uncharacterized protein LOC107422001 OS=Ziziphus jujuba OX=326968 GN=LOC107422001 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 93/152 (61.18%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 1   MISLKP-STHHNGSSF--PYNYSLNLQQNPIPIIRIKP-NFTPEFHSRTTFRTRAEQPGS 60
           M+SLKP  THH  SS   P+N    ++Q      +I+P    P      + R  + Q   
Sbjct: 1   MLSLKPCKTHHRLSSLSSPFNLQNIIKQTQ---TKIRPTKLAPRRSLSLSIRGCSGQEEK 60

Query: 61  G---NGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEEEECSIEELNA 120
           G     ++RRTFLT+EEAGLVE+SGLGTHERFLCRLTISSLNLLRVIAE+E CSIEELNA
Sbjct: 61  GRENKSSQRRTFLTLEEAGLVEISGLGTHERFLCRLTISSLNLLRVIAEQEGCSIEELNA 120

Query: 121 GRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF 146
           GR+CDWF+KDKLKREQN+DSAVLQWDDS+  F
Sbjct: 121 GRVCDWFVKDKLKREQNIDSAVLQWDDSESPF 149

[Close]

BLAST of Clc01G23080 vs. TAIR 10
Match: AT4G21445.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-36
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 44  RTTFRTRAEQPGSGNGAERRTFLTIEEAGLVEVSGLGTHERFLCRLTISSLNLLRVIAEE 103
           R +  T  E+    N  ERR+FL++ EAGLVE+SGLG HE+FLCRLTISSLNLLRVI+E+
Sbjct: 53  RASAETGEEESDDQNKPERRSFLSLAEAGLVEISGLGAHEKFLCRLTISSLNLLRVISEQ 112

Query: 104 EECSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD 143
           E CSIEELNAG++CDWFLKDKLKRE N++SAVLQWDD D
Sbjct: 113 EGCSIEELNAGKICDWFLKDKLKREHNIESAVLQWDDPD 151

The following BLAST results are available for this feature:

BLAST of Clc01G23080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881387.1	2.8e-62	88.51	uncharacterized protein LOC120072922 [Benincasa hispida]	[more]
XP_004134733.1	6.5e-59	83.11	uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical ...	[more]
XP_022977984.1	2.5e-58	82.07	uncharacterized protein LOC111478111 [Cucurbita maxima]	[more]
XP_023544671.1	4.2e-58	81.38	uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo]	[more]
XP_022949732.1	3.6e-57	81.38	uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothet...	[more]

BLAST of Clc01G23080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G23080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHI4	3.1e-59	83.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1	[more]
A0A6J1ISV2	1.2e-58	82.07	uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111...	[more]
A0A6J1GCY7	1.7e-57	81.38	uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC1114530...	[more]
A0A6J1CKG5	2.6e-45	71.81	uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6P4A1U2	1.2e-37	61.18	uncharacterized protein LOC107422001 OS=Ziziphus jujuba OX=326968 GN=LOC10742200...	[more]

BLAST of Clc01G23080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21445.1	4.8e-36	70.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36382	OSJNBA0043L09.26 PROTEIN	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G23080.1	Clc01G23080.1	mRNA