Clc01G22170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G22170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	chaperonin-like RBCX protein 1, chloroplastic
Location	ClcChr01: 33437307 .. 33439215 (-)
RNA-Seq Expression	Clc01G22170
Synteny	Clc01G22170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATCTGCAAGGATTCTTTCCTCTTCTCAGTTCCCTTCCATTTTCCCACTACCCAATTTAAACAGAGGCAATGTTTTTCCAGTTTGGCCAAAAAAGCCAAGAGTTTTCAAGTCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGTGGGTTCTCTTTCTCTTTCTTTTTGTTTTTCCATTAGGAATACACAGATTTCTGTTTGTTTGTTTATCTATATTCAAAATTAGGGTTTGGAGAAGCTTCACCAGAATCAAAGGCAGCCAGAAATCTGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCCCAGCTTGAGGTTACTCTTCAGTTGCTTTGTTTTAATTGCTCGGCCATATTGTGTGGGTTTTCGTTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTTGATAAACATTCACTGAATGATGGGGACAAATTCTTGGCCAGTTTGATGCGAGAGTCGTCAAGGCATAAATCTCTTGGTAACCCAAATCTACTTTGTTTCTTTAGTTTAGCCCATATCTACAACGAGTTCATTAGACCAAAAAATGCGTAAAAATAGATTCTTAGGAACATACAGAAAGAGGAATGCAATGCATGATCTTCATTCAGATGTTTTTCGTGGTTTCTTTTGGCCAATACCTGTCAACAAGGGAAGCCAATAGTTAATAGATTCGAATTTAGTAAAGTTTGAAGAAAAATGAAGTTTATTGTTAATCAAGTTTCATATCTTGTTCTAACAATGAGCCTTCTAATTGTGGTAAATATCTCGACTTTGGCAGCATTGCGCATACTAGAGGTTAGTTCTGTACACTTGAGAGTTAATGAATACATCCCACTGAAAAACACTCATCTATAAGCAAATCATTGATTCCAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAGTAAGAGAACTCGTCTGTTTCTCTGGCAATTTCCTAACAGCATTATGATCAGTTGCTTGCTTCCCTAACTGAGATTCATTGTTTTCAGATGGTTAGTGAATCCAACACGAGACTGATGAGGGAATACGTAACAGAGACAAGTCCATCGGATACCGAGAAGTGATGAAATTCTGCATTGTCTTCACTTTTTGCAGTTAAACAGGAGAGGATACATAAATTCAGTGTGTATGATATGAGATAAGTAACAACGAAGTAGCAAACCCAGTGCCATATACGGAGACATTCATTCTGAATTCTTCTTGCGTGCTACAAAATAATATTCATCGTAATTTAAATTACTCAAATGTTTCACCCGTTGCTGAAGATTAACAATGCCCCACCTAAAGTTCAGAAATTTGTTAATCAGCTCCAGTCTGAAACAGGGTCTTGTGGTTTTCTTAAAAGAAATCAGAGGAAGCAATAAGGTTCAGGGATGTGTAAGAACCAAAATATGGGATGAATGAGAATGCAAGGCATTTCAGACCAAGACCTGAATGGGGCAGAGAGACAATCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAACGCAAAAGACTTTTTGCAAACTTAACTTGGGAAATAATTAGCATGATTAAAAGTGATTGTTGGGGAATCAGTGGCTGGCTAACGTATAGTTGGATCTTCATATATAGATAAGCTCGGAAGAACAAAAGACTATATCCTTCCATCTCCCATTGCCCCAATTTCTTTTGTCTAATTAAGGCGAGGTTTTTATAGTTGTAAATCATCCATCACATCAACATATCACCAAATCATCACATCAAAACAGAAGAATTTTGATATGTAAAAGAGAGATTTGCAAAACTTGACAGTCTGCCAGTAAGCATGGTTCTTTTTGTTATTTTCGAAC

mRNA sequence

ATGGAATCATCTGCAAGGATTCTTTCCTCTTCTCAGTTCCCTTCCATTTTCCCACTACCCAATTTAAACAGAGGCAATGTTTTTCCAGTTTGGCCAAAAAAGCCAAGAGTTTTCAAGTCTATGCGCTTGCATTGCAGGTTTGGAGAAGCTTCACCAGAATCAAAGGCAGCCAGAAATCTGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCCCAGCTTGAGGTTACTCTTCAGTTGCTTTGTTTTAATTGCTCGGCCATATTGTGTGGGTTTTCGTTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTTGATAAACATTCACTGAATGATGGGGACAAATTCTTGGCCAGTTTGATGCGAGAGTCGTCAAGGCATAAATCTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTAGTGAATCCAACACGAGACTGATGAGGGAATACGTAACAGAGACAAGTCCATCGGATACCGAGAAGTGATGAAATTCTGCATTGTCTTCACTTTTTGCAGTTAAACAGGAGAGGATACATAAATTCAGTGTGTATGATATGAGATAAGTAACAACGAAGTAGCAAACCCAGTGCCATATACGGAGACATTCATTCTGAATTCTTCTTGCGTGCTACAAAATAATATTCATCGTAATTTAAATTACTCAAATGTTTCACCCGTTGCTGAAGATTAACAATGCCCCACCTAAAGTTCAGAAATTTGTTAATCAGCTCCAGTCTGAAACAGGGTCTTGTGGTTTTCTTAAAAGAAATCAGAGGAAGCAATAAGGTTCAGGGATGTGTAAGAACCAAAATATGGGATGAATGAGAATGCAAGGCATTTCAGACCAAGACCTGAATGGGGCAGAGAGACAATCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAACGCAAAAGACTTTTTGCAAACTTAACTTGGGAAATAATTAGCATGATTAAAAGTGATTGTTGGGGAATCAGTGGCTGGCTAACGTATAGTTGGATCTTCATATATAGATAAGCTCGGAAGAACAAAAGACTATATCCTTCCATCTCCCATTGCCCCAATTTCTTTTGTCTAATTAAGGCGAGGTTTTTATAGTTGTAAATCATCCATCACATCAACATATCACCAAATCATCACATCAAAACAGAAGAATTTTGATATGTAAAAGAGAGATTTGCAAAACTTGACAGTCTGCCAGTAAGCATGGTTCTTTTTGTTATTTTCGAAC

Coding sequence (CDS)

ATGGAATCATCTGCAAGGATTCTTTCCTCTTCTCAGTTCCCTTCCATTTTCCCACTACCCAATTTAAACAGAGGCAATGTTTTTCCAGTTTGGCCAAAAAAGCCAAGAGTTTTCAAGTCTATGCGCTTGCATTGCAGGTTTGGAGAAGCTTCACCAGAATCAAAGGCAGCCAGAAATCTGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCCCAGCTTGAGGTTACTCTTCAGTTGCTTTGTTTTAATTGCTCGGCCATATTGTGTGGGTTTTCGTTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCTGGAGTTAATGGAGTTTCTTGATAAACATTCACTGAATGATGGGGACAAATTCTTGGCCAGTTTGATGCGAGAGTCGTCAAGGCATAAATCTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTAGTGAATCCAACACGAGACTGATGAGGGAATACGTAACAGAGACAAGTCCATCGGATACCGAGAAGTGA

Protein sequence

MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCRFGEASPESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

Homology

[Close]

BLAST of Clc01G22170 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 1.1e-77
Identity = 163/202 (80.69%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MES ARILS + FPS+FP PNLNR N  PVWPKK    KS+RLHC       FGEASPE+
Sbjct: 1   MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQ-LLCFNCSAILCGFSLVLILVLVEQSYNPEAYL 120
           KAA+NLHNFFTYVAVRIVTAQLEV LQ LLCFNCSA+L    LVLILVLVEQSYNPEA+ 
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAML----LVLILVLVEQSYNPEAHA 120

Query: 121 ELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 180
           ELMEFLD+HSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV
Sbjct: 121 ELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMV 180

Query: 181 SESNTRLMREYVTETSPSDTEK 196
            ESNTRLMREYVTETSP D EK
Sbjct: 181 GESNTRLMREYVTETSP-DAEK 197

[Close]

BLAST of Clc01G22170 vs. NCBI nr
Match: XP_038881664.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 295.4 bits (755), Expect = 3.5e-76
Identity = 157/201 (78.11%), Postives = 161/201 (80.10%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           ME SARILSS+QFPS+FPLPNLNR NVFPVWPKKP+  KSMRLHC       FGEASPES
Sbjct: 1   MEPSARILSSTQFPSLFPLPNLNRSNVFPVWPKKPKATKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAARNLHNFFTYVAVRIVTAQLE                            SYNPEAY E
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYQE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 173

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTRLMREYVTETSPSDTEK
Sbjct: 181 ESNTRLMREYVTETSPSDTEK 173

[Close]

BLAST of Clc01G22170 vs. NCBI nr
Match: XP_004134778.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 7.4e-74
Identity = 154/201 (76.62%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MESSARILS +QFPS+F LPNLNRGNVFPV P KPR FK MRLHC       FGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAARNLHNFFTYVAVRIVTAQLE                            SYNPEAYLE
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMVS
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVS 173

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Clc01G22170 vs. NCBI nr
Match: XP_008440039.1 (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chaperonin-like RBCX protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-73
Identity = 155/201 (77.11%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MESSARILS +QFPSIF LPNLNRGNVFPV P KPR  KSMRLHC       FGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAARNLHNFFTYVAVRIVTAQLE                            SYNPEAYLE
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVG 173

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Clc01G22170 vs. NCBI nr
Match: XP_022132911.1 (chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 142/203 (69.95%), Postives = 155/203 (76.35%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASP 60
           MESSAR+LS +QFPS+FPLPNLNR  VFP+WP KP+   F  ++L C       FGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  ESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAY 120
           E+KAA+NLHNFFTYVAVRIV AQLE                            SYNPEA+
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLE----------------------------SYNPEAH 120

Query: 121 LELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKM 180
           +ELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM
Sbjct: 121 VELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM 175

Query: 181 VSESNTRLMREYVTETSPSDTEK 196
            SESNTRLMREYVTETSPS+TEK
Sbjct: 181 ASESNTRLMREYVTETSPSETEK 175

[Close]

BLAST of Clc01G22170 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.8e-44
Identity = 105/199 (52.76%), Postives = 128/199 (64.32%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESK 60
           MESS+ +L  S    + P         +P+       K+ R+  +      FGEASPE+K
Sbjct: 1   MESSSSLLHHSYLSYLNPKFGKRPLVSYPLMQSSRKCKQTRICSNKMYVPGFGEASPEAK 60

Query: 61  AARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLEL 120
           AA++LH+FFTYVAVRIV+AQLE                            SYNPEAY+EL
Sbjct: 61  AAKHLHDFFTYVAVRIVSAQLE----------------------------SYNPEAYMEL 120

Query: 121 MEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSE 180
            EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +
Sbjct: 121 REFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDD 171

Query: 181 SNTRLMREYVTETSPSDTE 195
           SNTRLMREYV ETS  +T+
Sbjct: 181 SNTRLMREYVLETSHVETD 171

[Close]

BLAST of Clc01G22170 vs. ExPASy TrEMBL
Match: A0A0A0KMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.6e-74
Identity = 154/201 (76.62%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MESSARILS +QFPS+F LPNLNRGNVFPV P KPR FK MRLHC       FGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAARNLHNFFTYVAVRIVTAQLE                            SYNPEAYLE
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFLASLMRESSRHK+LALRILEVRSAYCKNDFEWDNLKRLAFKMVS
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVS 173

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Clc01G22170 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.1e-74
Identity = 155/201 (77.11%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MESSARILS +QFPSIF LPNLNRGNVFPV P KPR  KSMRLHC       FGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAARNLHNFFTYVAVRIVTAQLE                            SYNPEAYLE
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVG 173

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Clc01G22170 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.1e-74
Identity = 155/201 (77.11%), Postives = 159/201 (79.10%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MESSARILS +QFPSIF LPNLNRGNVFPV P KPR  KSMRLHC       FGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAARNLHNFFTYVAVRIVTAQLE                            SYNPEAYLE
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAYLE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVG 173

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTR+MREY+TETSPSDTEK
Sbjct: 181 ESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Clc01G22170 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 142/203 (69.95%), Postives = 155/203 (76.35%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRV--FKSMRLHCR------FGEASP 60
           MESSAR+LS +QFPS+FPLPNLNR  VFP+WP KP+   F  ++L C       FGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  ESKAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAY 120
           E+KAA+NLHNFFTYVAVRIV AQLE                            SYNPEA+
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLE----------------------------SYNPEAH 120

Query: 121 LELMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKM 180
           +ELMEFLD+HSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM
Sbjct: 121 VELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM 175

Query: 181 VSESNTRLMREYVTETSPSDTEK 196
            SESNTRLMREYVTETSPS+TEK
Sbjct: 181 ASESNTRLMREYVTETSPSETEK 175

[Close]

BLAST of Clc01G22170 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.4e-67
Identity = 143/201 (71.14%), Postives = 152/201 (75.62%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWPKKPRVFKSMRLHCR------FGEASPES 60
           MES ARILS + FPS+FPLPNLNR N  PVWPKKP   KS+RLHC       FGEASPE+
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLE 120
           KAA+NLHNFFTYVAVRIVTAQLE                            SYNPEA+ E
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLE----------------------------SYNPEAHTE 120

Query: 121 LMEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVS 180
           LMEFLD+HSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMV 
Sbjct: 121 LMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVG 172

Query: 181 ESNTRLMREYVTETSPSDTEK 196
           ESNTRLMREYVTETSP D EK
Sbjct: 181 ESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of Clc01G22170 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-45
Identity = 105/199 (52.76%), Postives = 128/199 (64.32%), Query Frame = 0


Query: 1   MESSARILSSSQFPSIFPLPNLNRGNVFPVWP-----KKPRVFKSMRLHCRFGEASPESK 60
           MESS+ +L  S    + P         +P+       K+ R+  +      FGEASPE+K
Sbjct: 1   MESSSSLLHHSYLSYLNPKFGKRPLVSYPLMQSSRKCKQTRICSNKMYVPGFGEASPEAK 60

Query: 61  AARNLHNFFTYVAVRIVTAQLEVTLQLLCFNCSAILCGFSLVLILVLVEQSYNPEAYLEL 120
           AA++LH+FFTYVAVRIV+AQLE                            SYNPEAY+EL
Sbjct: 61  AAKHLHDFFTYVAVRIVSAQLE----------------------------SYNPEAYMEL 120

Query: 121 MEFLDKHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVSE 180
            EFLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +
Sbjct: 121 REFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDD 171

Query: 181 SNTRLMREYVTETSPSDTE 195
           SNTRLMREYV ETS  +T+
Sbjct: 181 SNTRLMREYVLETSHVETD 171

The following BLAST results are available for this feature:

BLAST of Clc01G22170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026647.1	1.1e-77	80.69	Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
XP_038881664.1	3.5e-76	78.11	chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_004134778.1	7.4e-74	76.62	chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]	[more]
XP_008440039.1	1.3e-73	77.11	PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chape...	[more]
XP_022132911.1	2.3e-67	69.95	chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]	[more]

BLAST of Clc01G22170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU9	2.8e-44	52.76	Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Clc01G22170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMZ4	3.6e-74	76.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1	[more]
A0A5D3CNU4	6.1e-74	77.11	Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B054	6.1e-74	77.11	uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=...	[more]
A0A6J1BTL5	1.1e-67	69.95	chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KRH1	1.4e-67	71.14	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Clc01G22170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04330.1	2.0e-45	52.76	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 43..195 e-value: 3.4E-48 score: 165.0
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 47..193
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 55..78 e-value: 1.7E-4 score: 21.8 coord: 105..188 e-value: 2.4E-21 score: 76.1
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..194
None	No IPR available	PANTHER	PTHR33791:SF12	CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G22170.2	Clc01G22170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0033314	mitotic DNA replication checkpoint signaling
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0044183	protein folding chaperone