Clc01G21760 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGA ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGA ATGGCTTTAAGATGGCTGCTTCATTCAACAAGTTATCTTCTTGGGAACCCAACTGAGGTCCATGGCTATGGTGAAGAGAGAAGTTCAAAAGTTAAAAAGGGTTATGAAGAAATATGCACTTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAACAAGGCAGATTACCAGAAGATGGAGGAGTGGAAGCTTGATCTCCTTCTCAAGGAATATGGCTTGAGTTTTCAAGGCAGTTTGGAGGAGAAGAGGGCTTTTGCAATGGGTGCTTTTCTATGGCCTGATCAGTATTGA MALRWLLHSTSYLLGNPTEVHGYGEERSSKVKKGYEEICTSGFQMPLHYPRYNKADYQKMEEWKLDLLLKEYGLSFQGSLEEKRAFAMGAFLWPDQY Homology
BLAST of Clc01G21760 vs. NCBI nr
Match: TYK12988.1 (uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa]) HSP 1 Score: 185.3 bits (469), Expect = 2.6e-43 Identity = 85/97 (87.63%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Clc01G21760 vs. NCBI nr
Match: XP_038882557.1 (uncharacterized protein LOC120073788 [Benincasa hispida]) HSP 1 Score: 183.7 bits (465), Expect = 7.4e-43 Identity = 88/97 (90.72%), Postives = 89/97 (91.75%), Query Frame = 0
BLAST of Clc01G21760 vs. NCBI nr
Match: XP_011658113.1 (uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_003579 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 3.7e-42 Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0
BLAST of Clc01G21760 vs. NCBI nr
Match: KAG6603827.1 (hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034009.1 hypothetical protein SDJN02_03735, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 171.0 bits (432), Expect = 5.0e-39 Identity = 84/99 (84.85%), Postives = 88/99 (88.89%), Query Frame = 0
BLAST of Clc01G21760 vs. NCBI nr
Match: KAG6594704.1 (hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026671.1 hypothetical protein SDJN02_10674, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 157.1 bits (396), Expect = 7.5e-35 Identity = 76/96 (79.17%), Postives = 81/96 (84.38%), Query Frame = 0
BLAST of Clc01G21760 vs. ExPASy TrEMBL
Match: A0A5D3CP92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005850 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43 Identity = 85/97 (87.63%), Postives = 87/97 (89.69%), Query Frame = 0
BLAST of Clc01G21760 vs. ExPASy TrEMBL
Match: A0A0A0KMW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42 Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0
BLAST of Clc01G21760 vs. ExPASy TrEMBL
Match: A0A6J1BUU9 (uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005569 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 8.3e-32 Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Clc01G21760 vs. ExPASy TrEMBL
Match: A0A2N9EZP3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8195 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28 Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 0
BLAST of Clc01G21760 vs. ExPASy TrEMBL
Match: A0A6J1B6U9 (uncharacterized protein LOC110424651 OS=Herrania umbratica OX=108875 GN=LOC110424651 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.5e-28 Identity = 69/121 (57.02%), Postives = 81/121 (66.94%), Query Frame = 0
BLAST of Clc01G21760 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 94.4 bits (233), Expect = 5.5e-20 Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 0
BLAST of Clc01G21760 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 84.7 bits (208), Expect = 4.4e-17 Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 0
BLAST of Clc01G21760 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 84.0 bits (206), Expect = 7.5e-17 Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 0
BLAST of Clc01G21760 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15 Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0
BLAST of Clc01G21760 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 58.9 bits (141), Expect = 2.6e-09 Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|