Clc01G21580 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G21580
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr01: 33100587 .. 33101732 (+)
RNA-Seq ExpressionClc01G21580
SyntenyClc01G21580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACATTTACCTTCGGAGACGCATACAATATGTGGTTGACACAGTCCAATTCCAGAAAAGGGAGTAAGGGACAAAGGAAAAGCTGCAGAAACACCAAACAAGCCCAGGTGATCGGAGCAAACAGCTGAAAAAGCTTCTCGGATTCAGATTCAACCACACAGCGCCATATGTTATGATGCAGAAGATGAGAAAGCCTTAATGGTGAAAAGGGTTTAGAAATCACAAGCTGATTTATTCAGATTTTATGATGGAAAAAATGGGTGTTAAAAATCTACTGGTGAGGCACGCCAAGTAAAGGTAAATTGGTTATTGAGTGCATGGGGACAAGGAGAGGGACATGGGTTTGGAATCTCCTGATTAGTCAACCTAGTAATAATCTAAAGCAACGCTATCATAAACCGCTTGAAGATATACAGAAGGGAAATGTAATGAAAAAGTTAATGCAGGCAGTCTTTGGACAAATGGTGTTCTAATCATAAATCTCCAAATGAATCATGCATAATAATCAAGATCAAGAAAATTGATATGCACTGAAATATTCACATATACAGTCATAAGTTCAAGTTGATCTACAAAAGGTTCGCCAAAGAAATTAAGCTGAAGTTCACTGAAAGTCAAAATTGAAACAGGGAATCGAGATTATAAAGTGAGAATTGAGATGGGGAAAAACAAAAAACAAATTGCAGATGTGGGGTTAGGGCTAGGGTTTAATGCTCTATAGCTAAGAAGGGGGGAAAAAGGAGCTTTACTGGGTCCCTGTGCTTCTCGAGATTGAAAGATCGCCAATGGCAGCCTTCATCATGATTCCCCCCACTAACTCCGCTGATTCTTCTTCCATTAATCGTTGGTTGGTTCTTCTTGATCTGCATGTCGGCCACGTGTCGCCGGCTGTATCACTCTGACGTTGGATTACTCTTCTTTTTGTTGGTGGTTTCGGAGGCCAATCGCAGACAACTCTCTCTCTTTCTTTTCAACTTGTGTCGCCTAATTTCCCCATGCGCGAGCGGAACTGCCGCACCGCCGCCGCCTGCTACGGTGGCGGCCATTTTCCGCCGGCAGTTTTCGCTTCGACGGCAAACAGTGGCGTGAACTTCGTGCAGAACCAACCTTTTCCATCGTCTCTCTTACAATTTCATCATTGA

mRNA sequence

ATGAGAACATTTACCTTCGGAGACGCATACAATATGTGGTTGACACAGTCCAATTCCAGAAAAGGGAGTAAGGGACAAAGGAAAAGCTGCAGAAACACCAAACAAGCCCAGACAACTCTCTCTCTTTCTTTTCAACTTGTGTCGCCTAATTTCCCCATGCGCGAGCGGAACTGCCGCACCGCCGCCGCCTGCTACGGTGGCGGCCATTTTCCGCCGGCAGTTTTCGCTTCGACGGCAAACAGTGGCGTGAACTTCGTGCAGAACCAACCTTTTCCATCGTCTCTCTTACAATTTCATCATTGA

Coding sequence (CDS)

ATGAGAACATTTACCTTCGGAGACGCATACAATATGTGGTTGACACAGTCCAATTCCAGAAAAGGGAGTAAGGGACAAAGGAAAAGCTGCAGAAACACCAAACAAGCCCAGACAACTCTCTCTCTTTCTTTTCAACTTGTGTCGCCTAATTTCCCCATGCGCGAGCGGAACTGCCGCACCGCCGCCGCCTGCTACGGTGGCGGCCATTTTCCGCCGGCAGTTTTCGCTTCGACGGCAAACAGTGGCGTGAACTTCGTGCAGAACCAACCTTTTCCATCGTCTCTCTTACAATTTCATCATTGA

Protein sequence

MRTFTFGDAYNMWLTQSNSRKGSKGQRKSCRNTKQAQTTLSLSFQLVSPNFPMRERNCRTAAACYGGGHFPPAVFASTANSGVNFVQNQPFPSSLLQFHH
Homology
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BLAST of Clc01G21580 vs. NCBI nr
Match: KAG6594713.1 (hypothetical protein SDJN03_11266, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 40  LSLSFQLVSPNFPMRERNCRTAAACYGGGHFPPAVFASTANSGVNFVQNQPFPSSLLQFH 99
           LS  FQLVSPNF MRER+CR+ AA     HFP A F  T++S  +FVQN+ F SS LQFH
Sbjct: 47  LSSFFQLVSPNFSMRERDCRSTAAAV---HFPAAAF--TSDSSSSFVQNESFSSSFLQFH 102

Query: 100 H 101
           H
Sbjct: 107 H 102

The following BLAST results are available for this feature:
BLAST of Clc01G21580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594713.12.8e-0860.66hypothetical protein SDJN03_11266, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc01G21580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G21580 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G21580 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G21580.2Clc01G21580.2mRNA