Clc01G21320 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G21320
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RWP-RK domain-containing protein
Location	ClcChr01: 32936104 .. 32937537 (+)
RNA-Seq Expression	Clc01G21320
Synteny	Clc01G21320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGAACCTCCCCTCTCATGGTCCACACCCTCCATTCCATCTCTGTTCATACTATCCAAAACAAACCACTTTTGGTTCGTTCTTTACTCTGATTGGAGTTTTCTCCTCTTTAACATTGTCTTCTCAGTACAACAAAAAAGAACATCAAAGAATGGAATTGGTTTCTGTAAAGAATAGCTTCTATGTAAATCATCCCTTTGGAGGATAGGATAAGAGATAGGCTGCAAAGAGCTTCAGAGTTTTCACTGGTAACATTTCTAAGTTGGTTTTTTTCTCTTTTCATGGAAGTTTCTGGCACATGCATGGTCTGTATCTGCTTTATGAACTCTCTATTTGCTTCCCTTCTGTCACTGTGTCCTGTTGTTTCTGCAAACATCAATTTGTTAGGTGCTTACAGAGAGGGTTTTCGATTCAGTACAGAACTTAAAAAAGTTGCAGATCAAATGAAGAATGCCCATCTATCTTGTTTTTCCAAGGGAGAGTTATGTGAACTAAAGAATGGCAAATTTCATCAACCAAAAAACTTGCCTCTACTTGACCAGGACCTTAACTTCCTTCCCTGTTGTTCAGTTGCTATATCTAAAGGGTCTGAGAATCAAATGAAAGAGTCCTGTGAACCAGGTTGGCTTCAACTTTCTCTCTCTAAAGGGAATGTATCAAACTTCTTTTTGAACATTTAGAACTAGGAGTTCATGTCTATATTATGAAAGTTGATTAACCAGGTGGGAAATTGCCAGTTATTGCAGAAAAGAAAAGGAGGGCAACAAGTGAGCACATTGCTGGAATTACTTTATCAGATCTGGCTAAAAACTTTGGTGTTCCAATCACAGAAGCTTCAAGAAATCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACAGGAAGATAAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGTTATTCCTTTCTTCCTACTTTGCATCTAAGACTTCATTGCAACCTAGAAAGGCACGTAGTTTGTTTATGGAAAAGGGTGTTTGTAGGAAGAAGCAAAGCATAGAGAGGAAGACCACAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCTAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAGTTTGCAGCCATTAGTAATTATATGCATGATAATGGACAAGATAAATAACTGGCAAAGTAGTATGCTTCTTTTTAATCTCATTATGACATACCTGATAAGAAATTCTTGCAAGACCTGTACCAGCAATTTTCATATGGAACTTCTGTTAAAAATGCTATTTCCAATCAATATTGTGTTTGAATAATTGCTACAA

mRNA sequence

AATTGAACCTCCCCTCTCATGGTCCACACCCTCCATTCCATCTCTGTTCATACTATCCAAAACAAACCACTTTTGGTTCGTTCTTTACTCTGATTGGAGTTTTCTCCTCTTTAACATTGTCTTCTCAGTACAACAAAAAAGAACATCAAAGAATGGAATTGGTTTCTGTAAAGAATAGCTTCTATGTAAATCATCCCTTTGGAGGATAGGATAAGAGATAGGCTGCAAAGAGCTTCAGAGTTTTCACTGGTAACATTTCTAAGTTGGTTTTTTTCTCTTTTCATGGAAGTTTCTGGCACATGCATGGTCTGTATCTGCTTTATGAACTCTCTATTTGCTTCCCTTCTGTCACTGTGTCCTGTTGTTTCTGCAAACATCAATTTGTTAGGTGCTTACAGAGAGGGTTTTCGATTCAGTACAGAACTTAAAAAAGTTGCAGATCAAATGAAGAATGCCCATCTATCTTGTTTTTCCAAGGGAGAGTTATGTGAACTAAAGAATGGCAAATTTCATCAACCAAAAAACTTGCCTCTACTTGACCAGGACCTTAACTTCCTTCCCTGTTGTTCAGTTGCTATATCTAAAGGGTCTGAGAATCAAATGAAAGAGTCCTGTGAACCAGTTATTGCAGAAAAGAAAAGGAGGGCAACAAGTGAGCACATTGCTGGAATTACTTTATCAGATCTGGCTAAAAACTTTGGTGTTCCAATCACAGAAGCTTCAAGAAATCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACAGGAAGATAAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGACCACAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCTAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAGTTTGCAGCCATTAGTAATTATATGCATGATAATGGACAAGATAAATAACTGGCAAAGTAGTATGCTTCTTTTTAATCTCATTATGACATACCTGATAAGAAATTCTTGCAAGACCTGTACCAGCAATTTTCATATGGAACTTCTGTTAAAAATGCTATTTCCAATCAATATTGTGTTTGAATAATTGCTACAA

Coding sequence (CDS)

ATGGAAGTTTCTGGCACATGCATGGTCTGTATCTGCTTTATGAACTCTCTATTTGCTTCCCTTCTGTCACTGTGTCCTGTTGTTTCTGCAAACATCAATTTGTTAGGTGCTTACAGAGAGGGTTTTCGATTCAGTACAGAACTTAAAAAAGTTGCAGATCAAATGAAGAATGCCCATCTATCTTGTTTTTCCAAGGGAGAGTTATGTGAACTAAAGAATGGCAAATTTCATCAACCAAAAAACTTGCCTCTACTTGACCAGGACCTTAACTTCCTTCCCTGTTGTTCAGTTGCTATATCTAAAGGGTCTGAGAATCAAATGAAAGAGTCCTGTGAACCAGTTATTGCAGAAAAGAAAAGGAGGGCAACAAGTGAGCACATTGCTGGAATTACTTTATCAGATCTGGCTAAAAACTTTGGTGTTCCAATCACAGAAGCTTCAAGAAATCTAAATGTTGGATTAACAGTACTGAAAAGAAAATGCAGAGAATTCGGCATTCATCGGTGGCCGCACAGGAAGATAAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGACCACAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGATTGAGACCAAGAGATTTAGGCAAGATGTTTTCAGGAGAAAGCATAAAGCTAGAGCTCTAGAAAGTCAGAGTCCATCAGTTTAG

Protein sequence

MEVSGTCMVCICFMNSLFASLLSLCPVVSANINLLGAYREGFRFSTELKKVADQMKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCEPVIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKARALESQSPSV

Homology

[Close]

BLAST of Clc01G21320 vs. NCBI nr
Match: XP_038882834.1 (protein RKD5 isoform X2 [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 3.0e-96
Identity = 184/197 (93.40%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCEPV 114
           MKNAHLS F KGELC+LKN KFHQP+NLPLLDQDLNFLP CSVA+SKGSE++MKE CEPV
Sbjct: 1   MKNAHLSYFPKGELCQLKNSKFHQPRNLPLLDQDLNFLP-CSVAVSKGSESEMKEFCEPV 60

Query: 115 IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 174
           IA KKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI
Sbjct: 61  IAAKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 175 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 234
           KSIDGLIRDLQEEAKHRE+DHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREDDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 180

Query: 235 FRRKHKARALESQSPSV 252
           FRRKHKARALESQS SV
Sbjct: 181 FRRKHKARALESQSSSV 196

[Close]

BLAST of Clc01G21320 vs. NCBI nr
Match: XP_038882831.1 (protein RKD5 isoform X1 [Benincasa hispida] >XP_038882832.1 protein RKD5 isoform X1 [Benincasa hispida] >XP_038882833.1 protein RKD5 isoform X1 [Benincasa hispida])

HSP 1 Score: 356.3 bits (913), Expect = 2.2e-94
Identity = 184/202 (91.09%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCE-- 114
           MKNAHLS F KGELC+LKN KFHQP+NLPLLDQDLNFLP CSVA+SKGSE++MKE CE  
Sbjct: 1   MKNAHLSYFPKGELCQLKNSKFHQPRNLPLLDQDLNFLP-CSVAVSKGSESEMKEFCEPG 60

Query: 115 ---PVIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 174
              PVIA KKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW
Sbjct: 61  GELPVIAAKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 120

Query: 175 PHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKR 234
           PHRKIKSIDGLIRDLQEEAKHRE+DHKALMAVTKRQMMLQNERESIERTPFRELEIETKR
Sbjct: 121 PHRKIKSIDGLIRDLQEEAKHREDDHKALMAVTKRQMMLQNERESIERTPFRELEIETKR 180

Query: 235 FRQDVFRRKHKARALESQSPSV 252
           FRQDVFRRKHKARALESQS SV
Sbjct: 181 FRQDVFRRKHKARALESQSSSV 201

[Close]

BLAST of Clc01G21320 vs. NCBI nr
Match: XP_016899254.1 (PREDICTED: protein RKD5 [Cucumis melo] >KAA0025608.1 protein RKD5 [Cucumis melo var. makuwa] >TYK12483.1 protein RKD5 [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-93
Identity = 182/198 (91.92%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESC-EP 114
           MKN HLSCF  GELC+LKNGK HQP+NLPLLDQDLNFLP CSV++SKGS NQM+ESC E 
Sbjct: 1   MKNPHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKGSGNQMEESCDES 60

Query: 115 VIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 174
            IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK
Sbjct: 61  GIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 120

Query: 175 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQD 234
           IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQD
Sbjct: 121 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQD 180

Query: 235 VFRRKHKARALESQSPSV 252
           VFRRKHKARALESQSPSV
Sbjct: 181 VFRRKHKARALESQSPSV 197

[Close]

BLAST of Clc01G21320 vs. NCBI nr
Match: XP_004134999.1 (protein RKD5 isoform X2 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 4.5e-92
Identity = 178/197 (90.36%), Postives = 183/197 (92.89%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCEPV 114
           MKN HLSCF  GELC+LKNGK HQP+NLPLLDQDLNFLP CSV++SK S NQM+ESC   
Sbjct: 1   MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKESGNQMEESCASG 60

Query: 115 IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 174
           I EKKRRATSEHIA ITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI
Sbjct: 61  IVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 175 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 234
           KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDV 180

Query: 235 FRRKHKARALESQSPSV 252
           FRRKHKARALESQSPSV
Sbjct: 181 FRRKHKARALESQSPSV 196

[Close]

BLAST of Clc01G21320 vs. NCBI nr
Match: XP_011658076.1 (protein RKD5 isoform X1 [Cucumis sativus] >KAE8647629.1 hypothetical protein Csa_003920 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 3.2e-90
Identity = 178/202 (88.12%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCEP- 114
           MKN HLSCF  GELC+LKNGK HQP+NLPLLDQDLNFLP CSV++SK S NQM+ESC   
Sbjct: 1   MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKESGNQMEESCASG 60

Query: 115 ----VIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 174
                I EKKRRATSEHIA ITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW
Sbjct: 61  GELIGIVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRW 120

Query: 175 PHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKR 234
           PHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERE IERTPFRELE ETKR
Sbjct: 121 PHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKR 180

Query: 235 FRQDVFRRKHKARALESQSPSV 252
           FRQDVFRRKHKARALESQSPSV
Sbjct: 181 FRQDVFRRKHKARALESQSPSV 201

[Close]

BLAST of Clc01G21320 vs. ExPASy Swiss-Prot
Match: O81791 (Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.1e-35
Identity = 89/194 (45.88%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 73  NGKFHQPKNLPLLDQDLNFLPCCSV----AISKGSEN---------QMKESCEPVIAEKK 132
           N    +P+ L +L QDLN LP        ++++ +E+         Q +   +  I +KK
Sbjct: 173 NSDLPKPRKL-VLKQDLNCLPDSETESEESVNEKTEHSEFENDKTEQSESDAKTEILKKK 232

Query: 133 RRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDG 192
           +R  S H+A ++L +L+K F + I EASRNL VGLTVLK+KCREFGI RWPHRKIKS+D 
Sbjct: 233 KRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDC 292

Query: 193 LIRDLQEEA-KHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRK 252
           LI DLQ EA K +E++  A MAV K+Q  L+ E+ +I + PF E+ IETK+FRQ+ F+++
Sbjct: 293 LIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKR 352

[Close]

BLAST of Clc01G21320 vs. ExPASy Swiss-Prot
Match: Q9M9U9 (Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-17
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 118 KKRRATSEHIAGITLS------DLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPH 177
           KKRR   E  +  ++S       ++  F +PIT+A+R LN+GLT+LK++CRE GI RWPH
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPH 169

Query: 178 RKIKSIDGLIRDLQE-EAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRF 237
           RK+ S+  LI +++E E    EE+   L    ++   L+ E+++IE+ P  + E +TKR 
Sbjct: 170 RKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKLPDLKFEDKTKRL 229

Query: 238 RQDVFRRKHKARALESQSPSV 252
           RQ  F+  HK +     S  +
Sbjct: 230 RQACFKANHKRKRRSGMSTPI 247

[Close]

BLAST of Clc01G21320 vs. ExPASy Swiss-Prot
Match: Q9LVU8 (Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-16
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 79  PKNLPLLDQDLNFLPCCSVAISKGSENQ---MKESCEPVIAEKKRRATSEHIAGITLSDL 138
           P ++ LL Q+  F    S +     +N         E V  +KKR    +    + +S++
Sbjct: 94  PSDIHLLTQEPYFSSDSSSSSPLAIQNDGLISNVKVEKVTVKKKRNLKKKRQDKLEMSEI 153

Query: 139 AKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDH 198
            + F  PI +A++ LNVGLTVLK++CRE GI+RWPHRK+KS++ LI++L+      E  +
Sbjct: 154 KQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNVGMEEEVKN 213

Query: 199 KALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKAR 243
                       L+  R  IE+ P  EL   TK+ RQ  F+  +K R
Sbjct: 214 ------------LEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRR 248

[Close]

BLAST of Clc01G21320 vs. ExPASy Swiss-Prot
Match: Q9CA66 (Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-16
Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 108 KESCEPVIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIH 167
           +E    +I++     TS     ++   +++ F +PIT+A+  LNVGLT+LKR+CRE GI 
Sbjct: 113 REHSVRIISDITTYTTSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIR 172

Query: 168 RWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIET 227
           RWPHRK+ S++ LI +++E  K   E++   +       ML+ E+ +IE  P  E + +T
Sbjct: 173 RWPHRKLMSLNTLISNVKELQKMEGEENAEKLQDALE--MLEKEKRTIEDLPDLEFKDKT 232

Query: 228 KRFRQDVFRRKH---KARALESQSPSV 252
           KR RQ  F+  H   K R+L+S    V
Sbjct: 233 KRLRQACFKANHKRKKKRSLKSDQSQV 257

[Close]

BLAST of Clc01G21320 vs. ExPASy Swiss-Prot
Match: Q9FGD1 (Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-16
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 105 NQMKESCEPVIAEKKRRATSEHIAGITLSDLAKN-FGVPITEASRNLNVGLTVLKRKCRE 164
           N MKE         KRR   + +      ++ K  F +PIT+A++ LN+G+T+LK++CRE
Sbjct: 133 NTMKEKTSQKRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRE 192

Query: 165 FGIHRWPHRKIKSIDGLI---RDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPF 224
            GI RWPHRK+ S++ LI   +DL    K R    K   A+     +L+ E++ IE  P 
Sbjct: 193 LGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPD 252

Query: 225 RELEIETKRFRQDVFRRKHKARALESQS 249
            E   +TKR RQ  F+ K+K R L S S
Sbjct: 253 LEFGDKTKRLRQACFKAKYKRRRLFSSS 276

[Close]

BLAST of Clc01G21320 vs. ExPASy TrEMBL
Match: A0A5A7SHH9 (Protein RKD5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00600 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.2e-94
Identity = 182/198 (91.92%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESC-EP 114
           MKN HLSCF  GELC+LKNGK HQP+NLPLLDQDLNFLP CSV++SKGS NQM+ESC E 
Sbjct: 1   MKNPHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKGSGNQMEESCDES 60

Query: 115 VIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 174
            IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK
Sbjct: 61  GIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 120

Query: 175 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQD 234
           IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQD
Sbjct: 121 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQD 180

Query: 235 VFRRKHKARALESQSPSV 252
           VFRRKHKARALESQSPSV
Sbjct: 181 VFRRKHKARALESQSPSV 197

[Close]

BLAST of Clc01G21320 vs. ExPASy TrEMBL
Match: A0A1S4DTD9 (protein RKD5 OS=Cucumis melo OX=3656 GN=LOC103485193 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.2e-94
Identity = 182/198 (91.92%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESC-EP 114
           MKN HLSCF  GELC+LKNGK HQP+NLPLLDQDLNFLP CSV++SKGS NQM+ESC E 
Sbjct: 1   MKNPHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKGSGNQMEESCDES 60

Query: 115 VIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 174
            IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK
Sbjct: 61  GIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRK 120

Query: 175 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQD 234
           IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQD
Sbjct: 121 IKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELESETKRFRQD 180

Query: 235 VFRRKHKARALESQSPSV 252
           VFRRKHKARALESQSPSV
Sbjct: 181 VFRRKHKARALESQSPSV 197

[Close]

BLAST of Clc01G21320 vs. ExPASy TrEMBL
Match: A0A0A0KGY8 (RWP-RK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509650 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.2e-92
Identity = 178/197 (90.36%), Postives = 183/197 (92.89%), Query Frame = 0


Query: 55  MKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCEPV 114
           MKN HLSCF  GELC+LKNGK HQP+NLPLLDQDLNFLP CSV++SK S NQM+ESC   
Sbjct: 1   MKNGHLSCFPNGELCQLKNGKSHQPRNLPLLDQDLNFLP-CSVSVSKESGNQMEESCASG 60

Query: 115 IAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 174
           I EKKRRATSEHIA ITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI
Sbjct: 61  IVEKKRRATSEHIARITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKI 120

Query: 175 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDV 234
           KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERE IERTPFRELE ETKRFRQDV
Sbjct: 121 KSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERERIERTPFRELENETKRFRQDV 180

Query: 235 FRRKHKARALESQSPSV 252
           FRRKHKARALESQSPSV
Sbjct: 181 FRRKHKARALESQSPSV 196

[Close]

BLAST of Clc01G21320 vs. ExPASy TrEMBL
Match: A0A6J1BWV1 (protein RKD5 OS=Momordica charantia OX=3673 GN=LOC111005457 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.3e-80
Identity = 164/195 (84.10%), Postives = 172/195 (88.21%), Query Frame = 0


Query: 64  SKGELCE--LKNGKFHQPKNLPLLDQDLNFLPCCSVAISKGSENQMKESCEP-----VIA 123
           S  E C   L NGKFHQP+NLPLL+QDLNFLP CS A S+GSENQMKES EP     VIA
Sbjct: 4   SSNEECPSCLNNGKFHQPRNLPLLEQDLNFLP-CSAAASEGSENQMKESYEPGGELLVIA 63

Query: 124 EKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKS 183
           EKK+RATSEHIAGITLSDLAK F +PITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKS
Sbjct: 64  EKKKRATSEHIAGITLSDLAKYFDLPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKS 123

Query: 184 IDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFR 243
           IDGLIRDLQEEAKHREEDHKALMAVTKRQ MLQ+ERESIE TPFRELE ET+RFRQDVFR
Sbjct: 124 IDGLIRDLQEEAKHREEDHKALMAVTKRQRMLQSERESIEMTPFRELETETRRFRQDVFR 183

Query: 244 RKHKARALESQSPSV 252
           R+HKARALESQ  SV
Sbjct: 184 RRHKARALESQGTSV 197

[Close]

BLAST of Clc01G21320 vs. ExPASy TrEMBL
Match: A0A6J1GEC7 (protein RKD5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.7e-76
Identity = 162/208 (77.88%), Postives = 174/208 (83.65%), Query Frame = 0


Query: 44  FSTELKKVADQMKNAHLSCFSKGELCELKNGKFHQPKNLPLLDQDLNFLPC-CSVAISKG 103
           FSTE   VAD M +++LSCF K     L + KF        L QDLNFLPC  S+A+SKG
Sbjct: 6   FSTEFPNVADPMHDSYLSCFPK-----LNDEKF--------LHQDLNFLPCSSSMAVSKG 65

Query: 104 SE-NQMKESCEPVIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKC 163
            E +QMKE CEPV+A+KKRRATSEHIAGI LSDLAK F VPITEASR+LNVGLTVLKRKC
Sbjct: 66  PEIHQMKELCEPVLAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKC 125

Query: 164 REFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFR 223
           REFGIHRWPHRKIKSIDGLIRDLQEEAKHREED KALMAVTKRQMMLQNERESIERTPFR
Sbjct: 126 REFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFR 185

Query: 224 ELEIETKRFRQDVFRRKHKARALESQSP 250
           ELE ETKRFRQDVF+R+HKARAL S SP
Sbjct: 186 ELESETKRFRQDVFKRRHKARALVSHSP 200

[Close]

BLAST of Clc01G21320 vs. TAIR 10
Match: AT4G35590.1 (RWP-RK domain-containing protein )

HSP 1 Score: 150.2 bits (378), Expect = 2.2e-36
Identity = 89/194 (45.88%), Postives = 127/194 (65.46%), Query Frame = 0


Query: 73  NGKFHQPKNLPLLDQDLNFLPCCSV----AISKGSEN---------QMKESCEPVIAEKK 132
           N    +P+ L +L QDLN LP        ++++ +E+         Q +   +  I +KK
Sbjct: 173 NSDLPKPRKL-VLKQDLNCLPDSETESEESVNEKTEHSEFENDKTEQSESDAKTEILKKK 232

Query: 133 RRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDG 192
           +R  S H+A ++L +L+K F + I EASRNL VGLTVLK+KCREFGI RWPHRKIKS+D 
Sbjct: 233 KRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDC 292

Query: 193 LIRDLQEEA-KHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRK 252
           LI DLQ EA K +E++  A MAV K+Q  L+ E+ +I + PF E+ IETK+FRQ+ F+++
Sbjct: 293 LIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKR 352

[Close]

BLAST of Clc01G21320 vs. TAIR 10
Match: AT1G18790.1 (RWP-RK domain-containing protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-18
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 118 KKRRATSEHIAGITLS------DLAKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPH 177
           KKRR   E  +  ++S       ++  F +PIT+A+R LN+GLT+LK++CRE GI RWPH
Sbjct: 110 KKRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPH 169

Query: 178 RKIKSIDGLIRDLQE-EAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIETKRF 237
           RK+ S+  LI +++E E    EE+   L    ++   L+ E+++IE+ P  + E +TKR 
Sbjct: 170 RKLMSLQKLISNVKELEKMEGEENEDKLRNALEK---LEKEKKTIEKLPDLKFEDKTKRL 229

Query: 238 RQDVFRRKHKARALESQSPSV 252
           RQ  F+  HK +     S  +
Sbjct: 230 RQACFKANHKRKRRSGMSTPI 247

[Close]

BLAST of Clc01G21320 vs. TAIR 10
Match: AT5G53040.1 (RWP-RK domain-containing protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 57/167 (34.13%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 79  PKNLPLLDQDLNFLPCCSVAISKGSENQ---MKESCEPVIAEKKRRATSEHIAGITLSDL 138
           P ++ LL Q+  F    S +     +N         E V  +KKR    +    + +S++
Sbjct: 94  PSDIHLLTQEPYFSSDSSSSSPLAIQNDGLISNVKVEKVTVKKKRNLKKKRQDKLEMSEI 153

Query: 139 AKNFGVPITEASRNLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDH 198
            + F  PI +A++ LNVGLTVLK++CRE GI+RWPHRK+KS++ LI++L+      E  +
Sbjct: 154 KQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNVGMEEEVKN 213

Query: 199 KALMAVTKRQMMLQNERESIERTPFRELEIETKRFRQDVFRRKHKAR 243
                       L+  R  IE+ P  EL   TK+ RQ  F+  +K R
Sbjct: 214 ------------LEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRR 248

[Close]

BLAST of Clc01G21320 vs. TAIR 10
Match: AT1G74480.1 (RWP-RK domain-containing protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-17
Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 108 KESCEPVIAEKKRRATSEHIAGITLSDLAKNFGVPITEASRNLNVGLTVLKRKCREFGIH 167
           +E    +I++     TS     ++   +++ F +PIT+A+  LNVGLT+LKR+CRE GI 
Sbjct: 113 REHSVRIISDITTYTTSSAPTTLSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIR 172

Query: 168 RWPHRKIKSIDGLIRDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPFRELEIET 227
           RWPHRK+ S++ LI +++E  K   E++   +       ML+ E+ +IE  P  E + +T
Sbjct: 173 RWPHRKLMSLNTLISNVKELQKMEGEENAEKLQDALE--MLEKEKRTIEDLPDLEFKDKT 232

Query: 228 KRFRQDVFRRKH---KARALESQSPSV 252
           KR RQ  F+  H   K R+L+S    V
Sbjct: 233 KRLRQACFKANHKRKKKRSLKSDQSQV 257

[Close]

BLAST of Clc01G21320 vs. TAIR 10
Match: AT5G66990.1 (RWP-RK domain-containing protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-17
Identity = 57/148 (38.51%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 105 NQMKESCEPVIAEKKRRATSEHIAGITLSDLAKN-FGVPITEASRNLNVGLTVLKRKCRE 164
           N MKE         KRR   + +      ++ K  F +PIT+A++ LN+G+T+LK++CRE
Sbjct: 133 NTMKEKTSQKRIIMKRRYREDGVINNMSREMMKQYFYMPITKAAKELNIGVTLLKKRCRE 192

Query: 165 FGIHRWPHRKIKSIDGLI---RDLQEEAKHREEDHKALMAVTKRQMMLQNERESIERTPF 224
            GI RWPHRK+ S++ LI   +DL    K R    K   A+     +L+ E++ IE  P 
Sbjct: 193 LGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALE----LLEMEKKMIEEVPD 252

Query: 225 RELEIETKRFRQDVFRRKHKARALESQS 249
            E   +TKR RQ  F+ K+K R L S S
Sbjct: 253 LEFGDKTKRLRQACFKAKYKRRRLFSSS 276

The following BLAST results are available for this feature:

BLAST of Clc01G21320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882834.1	3.0e-96	93.40	protein RKD5 isoform X2 [Benincasa hispida]	[more]
XP_038882831.1	2.2e-94	91.09	protein RKD5 isoform X1 [Benincasa hispida] >XP_038882832.1 protein RKD5 isoform...	[more]
XP_016899254.1	1.1e-93	91.92	PREDICTED: protein RKD5 [Cucumis melo] >KAA0025608.1 protein RKD5 [Cucumis melo ...	[more]
XP_004134999.1	4.5e-92	90.36	protein RKD5 isoform X2 [Cucumis sativus]	[more]
XP_011658076.1	3.2e-90	88.12	protein RKD5 isoform X1 [Cucumis sativus] >KAE8647629.1 hypothetical protein Csa...	[more]

BLAST of Clc01G21320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81791	3.1e-35	45.88	Protein RKD5 OS=Arabidopsis thaliana OX=3702 GN=RKD5 PE=3 SV=1	[more]
Q9M9U9	6.5e-17	37.59	Protein RKD1 OS=Arabidopsis thaliana OX=3702 GN=RKD1 PE=3 SV=1	[more]
Q9LVU8	1.9e-16	34.13	Protein RKD4 OS=Arabidopsis thaliana OX=3702 GN=RKD4 PE=3 SV=1	[more]
Q9CA66	5.5e-16	36.73	Protein RKD2 OS=Arabidopsis thaliana OX=3702 GN=RKD2 PE=2 SV=1	[more]
Q9FGD1	5.5e-16	38.51	Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1	[more]

BLAST of Clc01G21320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHH9	5.2e-94	91.92	Protein RKD5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00600 P...	[more]
A0A1S4DTD9	5.2e-94	91.92	protein RKD5 OS=Cucumis melo OX=3656 GN=LOC103485193 PE=4 SV=1	[more]
A0A0A0KGY8	2.2e-92	90.36	RWP-RK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509650 PE=4...	[more]
A0A6J1BWV1	4.3e-80	84.10	protein RKD5 OS=Momordica charantia OX=3673 GN=LOC111005457 PE=4 SV=1	[more]
A0A6J1GEC7	1.7e-76	77.88	protein RKD5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453407 PE=4 ...	[more]

BLAST of Clc01G21320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35590.1	2.2e-36	45.88	RWP-RK domain-containing protein	[more]
AT1G18790.1	4.6e-18	37.59	RWP-RK domain-containing protein	[more]
AT5G53040.1	1.3e-17	34.13	RWP-RK domain-containing protein	[more]
AT1G74480.1	3.9e-17	36.73	RWP-RK domain-containing protein	[more]
AT5G66990.1	3.9e-17	38.51	RWP-RK domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 181..201
None	No IPR available	PANTHER	PTHR46373:SF12	PROTEIN RKD5	coord: 47..247
IPR003035	RWP-RK domain	PFAM	PF02042	RWP-RK	coord: 130..177 e-value: 2.9E-21 score: 75.2
IPR003035	RWP-RK domain	PROSITE	PS51519	RWP_RK	coord: 112..197 score: 17.995958
IPR044607	Transcription factor RKD-like	PANTHER	PTHR46373	PROTEIN RKD4	coord: 47..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G21320.1	Clc01G21320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity