Clc01G21250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G21250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	F-box domain-containing protein
Location	ClcChr01: 32904354 .. 32904763 (-)
RNA-Seq Expression	Clc01G21250
Synteny	Clc01G21250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATCTCCGGTACGGTGGTCCGATCTCCCTCCTAAGCTTTGGGACCTCATTGGAAATCAGCTCCAGACCGAGATCGACATAATCCGATTTCGAAGTATTTGTAGTTCATGGCGACGAGCTTCTCTTCCTCCTATCAATGCGGTTTGCCTTGATCTTTTGACTCTCAACAACTTTCTTTTCCCTCGTAGGGCCTCTTATAGGTCTCCTTTTTCCCGTCCCCCAAACCATGGCGGTATCGGCACCTCACTCCGCCGTAAGACAATCTTCCATATGATCATTCCCCTCCGATCTAATTTTGGTAACAAAAAATAGGGTATACTAAATTGCAGTTTATGAAACTGTTTTCTAGTCGCTTAATGTATGACGTCGAAGCTCGTGGGAGGGAAGCGAAATTGAACTTTTAG

mRNA sequence

ATGGAGAAATCTCCGGTACGGTGGTCCGATCTCCCTCCTAAGCTTTGGGACCTCATTGGAAATCAGCTCCAGACCGAGATCGACATAATCCGATTTCGAAGTATTTGTAGTTCATGGCGACGAGCTTCTCTTCCTCCTATCAATGCGGTTTGCCTTGATCTTTTGACTCTCAACAACTTTCTTTTCCCTCGTAGGGCCTCTTATAGGTCTCCTTTTTCCCGTCCCCCAAACCATGGCGGTATCGGCACCTCACTCCGCCGGTATACTAAATTGCAGTTTATGAAACTGTTTTCTAGTCGCTTAATGTATGACGTCGAAGCTCGTGGGAGGGAAGCGAAATTGAACTTTTAG

Coding sequence (CDS)

ATGGAGAAATCTCCGGTACGGTGGTCCGATCTCCCTCCTAAGCTTTGGGACCTCATTGGAAATCAGCTCCAGACCGAGATCGACATAATCCGATTTCGAAGTATTTGTAGTTCATGGCGACGAGCTTCTCTTCCTCCTATCAATGCGGTTTGCCTTGATCTTTTGACTCTCAACAACTTTCTTTTCCCTCGTAGGGCCTCTTATAGGTCTCCTTTTTCCCGTCCCCCAAACCATGGCGGTATCGGCACCTCACTCCGCCGGTATACTAAATTGCAGTTTATGAAACTGTTTTCTAGTCGCTTAATGTATGACGTCGAAGCTCGTGGGAGGGAAGCGAAATTGAACTTTTAG

Protein sequence

MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAVCLDLLTLNNFLFPRRASYRSPFSRPPNHGGIGTSLRRYTKLQFMKLFSSRLMYDVEARGREAKLNF

Homology

[Close]

BLAST of Clc01G21250 vs. NCBI nr
Match: XP_004135001.1 (putative F-box protein At5g60060 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 3   KSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRR-ASLPPINAVCLDLLTLNNFL 62
           KSPV WSDLP +LW+LIGN+L+TEIDIIRFRS+C+ WR+  SLP            ++  
Sbjct: 38  KSPVPWSDLPSELWELIGNRLETEIDIIRFRSVCTLWRQEVSLP------FFYYDYSSIF 97

Query: 63  FPRRAS--YRSPFSRPPNHGGIGTSLRRYTKLQFMKLFSSRLMYDVEARGREAKLN 116
            P R +  +  P  R   +    +S  + +KL F KLFSSRLMYD EARG+E++LN
Sbjct: 98  TPHRKTIFHLIPIRRRRTY--FSSSSNKQSKLHFTKLFSSRLMYDNEARGKESELN 145

[Close]

BLAST of Clc01G21250 vs. NCBI nr
Match: KAE8647627.1 (hypothetical protein Csa_003010 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-18
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 3   KSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRR-ASLPPINAVCLDLLTLNNFL 62
           KSPV WSDLP +LW+LIGN+L+TEIDIIRFRS+C+ WR+  SLP            ++  
Sbjct: 270 KSPVPWSDLPSELWELIGNRLETEIDIIRFRSVCTLWRQEVSLP------FFYYDYSSIF 329

Query: 63  FPRRAS--YRSPFSRPPNHGGIGTSLRRYTKLQFMKLFSSRLMYDVEARGREAKLN 116
            P R +  +  P  R   +    +S  + +KL F KLFSSRLMYD EARG+E++LN
Sbjct: 330 TPHRKTIFHLIPIRRRRTY--FSSSSNKQSKLHFTKLFSSRLMYDNEARGKESELN 377

[Close]

BLAST of Clc01G21250 vs. NCBI nr
Match: XP_038881861.1 (putative F-box protein At1g65770 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-11
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAV 51
          ME S VRWSDLPP+LW +IG +L T IDI+RFRS+C SW RASLPP NA+
Sbjct: 1  MEDSRVRWSDLPPELWPIIGKRLDTHIDILRFRSVCRSW-RASLPPFNAI 49

[Close]

BLAST of Clc01G21250 vs. NCBI nr
Match: XP_038881862.1 (putative F-box protein At1g65770 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAVCLDLLTLNNF 60
          MEKS VRWSDLPP+LW LIG +L   IDI+R+RS+C SW RASLP +NA+ L    L+  
Sbjct: 1  MEKSRVRWSDLPPQLWPLIGKRLDNYIDIVRYRSVCRSW-RASLPQLNAISL----LSPL 60

Query: 61 LFPRRASYR 70
            P  A +R
Sbjct: 61 RLPHPADHR 64

[Close]

BLAST of Clc01G21250 vs. NCBI nr
Match: XP_004135009.1 (putative F-box protein At1g65770 [Cucumis sativus] >KGN48970.1 hypothetical protein Csa_004173 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAVCL 53
          MEKS VRWSDLPP+LW LIG +L   IDI+RFRS+C SW RASLP +NA+ L
Sbjct: 1  MEKSRVRWSDLPPQLWPLIGKRLDNYIDIVRFRSVCRSW-RASLPQLNAISL 51

[Close]

BLAST of Clc01G21250 vs. ExPASy Swiss-Prot
Match: Q3EBZ2 (F-box protein SKIP23 OS=Arabidopsis thaliana OX=3702 GN=SKIP23 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.2e-07
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 6  VRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLP--PINAVCLDLLTLN-NFLF 65
          V WS LP  L DLI   L++  D+I+FRS+CSSWR A+ P  P+    L +L  N   LF
Sbjct: 2  VDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLF 61

Query: 66 PRRA 67
          P  A
Sbjct: 62 PDSA 65

[Close]

BLAST of Clc01G21250 vs. ExPASy Swiss-Prot
Match: Q9LS04 (Putative F-box protein At3g25750 OS=Arabidopsis thaliana OX=3702 GN=At3g25750 PE=4 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 4.1e-06
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRA 43
          MEK+   WSDLP +L DLI N+  + ID++R RS C SWR A
Sbjct: 1  MEKT--EWSDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSA 40

[Close]

BLAST of Clc01G21250 vs. ExPASy Swiss-Prot
Match: Q9SIW9 (F-box protein At2g16300 OS=Arabidopsis thaliana OX=3702 GN=At2g16300 PE=2 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 6.9e-06
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 8  WSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAVCLDLLTLNNFLFPRRAS 67
          WS LP  L +LI   L+T  +I+ FRS+CSSWR    P   + CL + T          S
Sbjct: 4  WSLLPNDLLELIVGHLETSFEIVLFRSVCSSWRSVVPPQDQSRCLSIKT-------HDIS 63

Query: 68 YRSPFS---RPPNHGGIGTSLRR 88
          + + FS   +P +H   G++L +
Sbjct: 64 FNAGFSFSGQPTDHPLFGSTLTK 79

[Close]

BLAST of Clc01G21250 vs. ExPASy Swiss-Prot
Match: Q9FLV8 (Putative F-box/kelch-repeat protein At5g24040 OS=Arabidopsis thaliana OX=3702 GN=At5g24040 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 6  VRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASL 45
          V+WS+LPP++  LI  ++    D+I FRS+CS WR +SL
Sbjct: 2  VKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSSSL 40

[Close]

BLAST of Clc01G21250 vs. ExPASy Swiss-Prot
Match: Q6DR20 (F-box protein At2g17036 OS=Arabidopsis thaliana OX=3702 GN=At2g17036 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-05
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 8  WSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLP 46
          W+ LP  L DLI   L++  D+I+FRS+CSSWR A+ P
Sbjct: 4  WATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGP 41

[Close]

BLAST of Clc01G21250 vs. ExPASy TrEMBL
Match: A0A0A0KMS6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509600 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.7e-19
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 3   KSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRR-ASLPPINAVCLDLLTLNNFL 62
           KSPV WSDLP +LW+LIGN+L+TEIDIIRFRS+C+ WR+  SLP            ++  
Sbjct: 38  KSPVPWSDLPSELWELIGNRLETEIDIIRFRSVCTLWRQEVSLP------FFYYDYSSIF 97

Query: 63  FPRRAS--YRSPFSRPPNHGGIGTSLRRYTKLQFMKLFSSRLMYDVEARGREAKLN 116
            P R +  +  P  R   +    +S  + +KL F KLFSSRLMYD EARG+E++LN
Sbjct: 98  TPHRKTIFHLIPIRRRRTY--FSSSSNKQSKLHFTKLFSSRLMYDNEARGKESELN 145

[Close]

BLAST of Clc01G21250 vs. ExPASy TrEMBL
Match: A0A0A0KGT9 (DUF295 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507430 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.7e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAVCL 53
          MEKS VRWSDLPP+LW LIG +L   IDI+RFRS+C SW RASLP +NA+ L
Sbjct: 1  MEKSRVRWSDLPPQLWPLIGKRLDNYIDIVRFRSVCRSW-RASLPQLNAISL 51

[Close]

BLAST of Clc01G21250 vs. ExPASy TrEMBL
Match: A0A5A7SHJ7 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00810 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.8e-12
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAV 51
          ME S VRWSDLPP+LW +IG +L T ID++RFRS+C SW RASLPP NAV
Sbjct: 1  MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSW-RASLPPFNAV 49

[Close]

BLAST of Clc01G21250 vs. ExPASy TrEMBL
Match: A0A0A0KJJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.8e-12
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAV 51
          ME S VRWSDLPP+LW +IG +L T ID++RFRS+C SW RASLPP NAV
Sbjct: 1  MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSW-RASLPPFNAV 49

[Close]

BLAST of Clc01G21250 vs. ExPASy TrEMBL
Match: A0A1S4DT77 (putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.8e-12
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAV 51
          ME S VRWSDLPP+LW +IG +L T ID++RFRS+C SW RASLPP NAV
Sbjct: 1  MEDSRVRWSDLPPELWPIIGKRLDTYIDVLRFRSVCRSW-RASLPPFNAV 49

[Close]

BLAST of Clc01G21250 vs. TAIR 10
Match: AT2G17030.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-08
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 6  VRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLP--PINAVCLDLLTLN-NFLF 65
          V WS LP  L DLI   L++  D+I+FRS+CSSWR A+ P  P+    L +L  N   LF
Sbjct: 2  VDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAEPKSPLPTHHLPILPDNGGSLF 61

Query: 66 PRRA 67
          P  A
Sbjct: 62 PDSA 65

[Close]

BLAST of Clc01G21250 vs. TAIR 10
Match: AT3G25750.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 1  MEKSPVRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRA 43
          MEK+   WSDLP +L DLI N+  + ID++R RS C SWR A
Sbjct: 1  MEKT--EWSDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSA 40

[Close]

BLAST of Clc01G21250 vs. TAIR 10
Match: AT2G16300.1 (F-box family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-07
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 8  WSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLPPINAVCLDLLTLNNFLFPRRAS 67
          WS LP  L +LI   L+T  +I+ FRS+CSSWR    P   + CL + T          S
Sbjct: 4  WSLLPNDLLELIVGHLETSFEIVLFRSVCSSWRSVVPPQDQSRCLSIKT-------HDIS 63

Query: 68 YRSPFS---RPPNHGGIGTSLRR 88
          + + FS   +P +H   G++L +
Sbjct: 64 FNAGFSFSGQPTDHPLFGSTLTK 79

[Close]

BLAST of Clc01G21250 vs. TAIR 10
Match: AT5G24040.1 (Protein of unknown function (DUF295) )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 6  VRWSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASL 45
          V+WS+LPP++  LI  ++    D+I FRS+CS WR +SL
Sbjct: 2  VKWSELPPEILHLISLKIDNPFDLIHFRSVCSFWRSSSL 40

[Close]

BLAST of Clc01G21250 vs. TAIR 10
Match: AT2G17036.1 (F-box family protein with a domain of unknown function (DUF295) )

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 8  WSDLPPKLWDLIGNQLQTEIDIIRFRSICSSWRRASLP 46
          W+ LP  L DLI   L++  D+I+FRS+CSSWR A+ P
Sbjct: 3  WATLPKDLLDLISKCLESSFDLIQFRSVCSSWRSAAGP 40

The following BLAST results are available for this feature:

BLAST of Clc01G21250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135001.1	1.2e-18	49.14	putative F-box protein At5g60060 [Cucumis sativus]	[more]
KAE8647627.1	1.2e-18	49.14	hypothetical protein Csa_003010 [Cucumis sativus]	[more]
XP_038881861.1	1.1e-11	70.00	putative F-box protein At1g65770 [Benincasa hispida]	[more]
XP_038881862.1	1.4e-11	56.52	putative F-box protein At1g65770 [Benincasa hispida]	[more]
XP_004135009.1	1.4e-11	69.23	putative F-box protein At1g65770 [Cucumis sativus] >KGN48970.1 hypothetical prot...	[more]

BLAST of Clc01G21250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3EBZ2	8.2e-07	46.88	F-box protein SKIP23 OS=Arabidopsis thaliana OX=3702 GN=SKIP23 PE=1 SV=1	[more]
Q9LS04	4.1e-06	54.76	Putative F-box protein At3g25750 OS=Arabidopsis thaliana OX=3702 GN=At3g25750 PE...	[more]
Q9SIW9	6.9e-06	34.94	F-box protein At2g16300 OS=Arabidopsis thaliana OX=3702 GN=At2g16300 PE=2 SV=3	[more]
Q9FLV8	1.5e-05	48.72	Putative F-box/kelch-repeat protein At5g24040 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6DR20	3.4e-05	52.63	F-box protein At2g17036 OS=Arabidopsis thaliana OX=3702 GN=At2g17036 PE=2 SV=1	[more]

BLAST of Clc01G21250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMS6	5.7e-19	49.14	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G509600 PE=4 ...	[more]
A0A0A0KGT9	6.7e-12	69.23	DUF295 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507430 PE=4...	[more]
A0A5A7SHJ7	8.8e-12	70.00	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A0A0KJJ1	8.8e-12	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1	[more]
A0A1S4DT77	8.8e-12	70.00	putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV...	[more]

BLAST of Clc01G21250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17030.1	5.8e-08	46.88	F-box family protein with a domain of unknown function (DUF295)	[more]
AT3G25750.1	2.9e-07	54.76	F-box family protein with a domain of unknown function (DUF295)	[more]
AT2G16300.1	4.9e-07	34.94	F-box family protein	[more]
AT5G24040.1	1.1e-06	48.72	Protein of unknown function (DUF295)	[more]
AT2G17036.1	2.4e-06	52.63	F-box family protein with a domain of unknown function (DUF295)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47123	F-BOX PROTEIN SKIP23	coord: 3..66
None	No IPR available	PANTHER	PTHR47123:SF6	ASCORBIC ACID MANNOSE PATHWAY REGULATOR-RELATED	coord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G21250.2	Clc01G21250.2	mRNA