Clc01G20570 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G20570
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr01: 32491555 .. 32492121 (+)
RNA-Seq Expression	Clc01G20570
Synteny	Clc01G20570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGGTAGACGATCTCAGTTACAGTTACAGACGTCTTCTTAAAGATTCCTTATTCGAGCATCCATTTGGAAGCCAAGAAAGAATTTTTAACATATGTGTGACTTCTGCCATTGCAGCCGTGTTTGTAATCTCTTTGTTCGTCTCCCTCTTCACCTGCGTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATTTAGCAGCCAACTCACTACCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTTCGTCGTCATCTTATGGTTTTACGTCATTGTTTGAGTCGAGGAACTGTGTCATATGTTTGGCGGAGTTTGAGCATGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGTGTTTCATAAAGGCTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCCTACAATAGAGGAGATTGGGACCATCAGACCTGTTTGTTCGAATTATTGGACCCGAAATCCAGCCTTCATATTGGCCTTTGGCCTTGGTAGTAGTGTCCCATTGCCCTCTCAACTGTAA

mRNA sequence

ATGAATTCGGTAGACGATCTCAGTTACAGTTACAGACGTCTTCTTAAAGATTCCTTATTCGAGCATCCATTTGGAAGCCAAGAAAGAATTTTTAACATATGTGTGACTTCTGCCATTGCAGCCGTGTTTGTAATCTCTTTGTTCGTCTCCCTCTTCACCTGCGTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATTTAGCAGCCAACTCACTACCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTTCGTCGTCATCTTATGGTTTTACGTCATTGTTTGAGTCGAGGAACTGTGTCATATGTTTGGCGGAGTTTGAGCATGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGTGTTTCATAAAGGCTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCCTACAATAGAGGAGATTGGGACCATCAGACCTGTTTGTTCGAATTATTGGACCCGAAATCCAGCCTTCATATTGGCCTTTGGCCTTGGTAGTAGTGTCCCATTGCCCTCTCAACTGTAA

Coding sequence (CDS)

ATGAATTCGGTAGACGATCTCAGTTACAGTTACAGACGTCTTCTTAAAGATTCCTTATTCGAGCATCCATTTGGAAGCCAAGAAAGAATTTTTAACATATGTGTGACTTCTGCCATTGCAGCCGTGTTTGTAATCTCTTTGTTCGTCTCCCTCTTCACCTGCGTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATTTAGCAGCCAACTCACTACCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTTCGTCGTCATCTTATGGTTTTACGTCATTGTTTGAGTCGAGGAACTGTGTCATATGTTTGGCGGAGTTTGAGCATGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGTGTTTCATAAAGGCTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCCTACAATAGAGGAGATTGGGACCATCAGACCTGTTTGTTCGAATTATTGGACCCGAAATCCAGCCTTCATATTGGCCTTTGGCCTTGGTAGTAGTGTCCCATTGCCCTCTCAACTGTAA

Protein sequence

MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLNSPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPVCSNYWTRNPAFILAFGLGSSVPLPSQL

Homology

[Close]

BLAST of Clc01G20570 vs. NCBI nr
Match: XP_038881295.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 324.7 bits (831), Expect = 5.2e-85
Identity = 158/189 (83.60%), Postives = 168/189 (88.89%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNSVD L YSYRRLLKDSLFEHPFG++ERI  IC TS IAA+FVISLF+SLFTC R QLN
Sbjct: 1   MNSVDYLGYSYRRLLKDSLFEHPFGNRERIVTICATSVIAAMFVISLFISLFTCFRHQLN 60

Query: 61  SPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRV 120
           SPSSKPP ST SSQLTTMPVYIYGD+SSS SSSY FTS FE RNCVICLAEF+HGDELRV
Sbjct: 61  SPSSKPPPSTSSSQLTTMPVYIYGDVSSSPSSSYCFTSSFEPRNCVICLAEFKHGDELRV 120

Query: 121 LPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFGLG 180
           LPNCKH FHKGCIDQWL L+SL CPLCRD T EEIGT+ RP+CSNYW RNPAFILAFGLG
Sbjct: 121 LPNCKHAFHKGCIDQWLLLRSLLCPLCRDHTTEEIGTMRRPICSNYWARNPAFILAFGLG 180

Query: 181 SSVPLPSQL 189
           S+VPLPSQL
Sbjct: 181 SNVPLPSQL 189

[Close]

BLAST of Clc01G20570 vs. NCBI nr
Match: XP_011658497.1 (E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 2.3e-80
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNSVDDL YS RRLLKDSLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQLN
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELR 120
           SPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESR CVICLAEFE+GDELR
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRTCVICLAEFEYGDELR 120

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFGL 180
           VLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RPVCSNYW+RNPAFILAFGL
Sbjct: 121 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 180

Query: 181 GSSVPLPSQL 189
           GS+ PLPSQL
Sbjct: 181 GSNAPLPSQL 189

[Close]

BLAST of Clc01G20570 vs. NCBI nr
Match: KAA0025673.1 (RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 3.3e-79
Identity = 157/191 (82.20%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKD-SLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQL 60
           MNSVDDL YS RRLLKD SLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  NSPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESRNCVICLAEFE+GDEL
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRNCVICLAEFEYGDEL 120

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFG 180
           RVLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RP+CSNYW RNPAFILAFG
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 180

Query: 181 LGSSVPLPSQL 189
           LGS+ PLPSQL
Sbjct: 181 LGSNAPLPSQL 190

[Close]

BLAST of Clc01G20570 vs. NCBI nr
Match: XP_008440820.1 (PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 3.3e-79
Identity = 157/191 (82.20%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKD-SLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQL 60
           MNSVDDL YS RRLLKD SLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFG 180
           RVLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RP+CSNYW RNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSSVPLPSQL 189
           LGS+ PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]

BLAST of Clc01G20570 vs. NCBI nr
Match: KAG6603909.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.6 bits (693), Expect = 5.3e-69
Identity = 135/191 (70.68%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNS     Y+YRRLLKDSL + PFG  ER+  ICV SAIAA FV+SLF+SLFTC RRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFT--SLFESRNCVICLAEFEHGDEL 120
           S SSKPPSST S QL++MPVYIYGD     S+ Y FT  S FE+RNCVICLAEFE GDEL
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSSFEARNCVICLAEFELGDEL 120

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIR-PVCSNYWTRNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+ +I+EIGT+R PVC+N+W RNPAF+LAF 
Sbjct: 121 RVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFA 180

Query: 181 LGSSVPLPSQL 189
             S+ PLPSQL
Sbjct: 181 SASNAPLPSQL 186

[Close]

BLAST of Clc01G20570 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 63  SSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLP 122
           SS  P     S + T+P+++Y   + +   + G TS    R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPV 162
            C H FH  CID+WL     +CPLCR   +   G + P+
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVLTPM 211

[Close]

BLAST of Clc01G20570 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.0e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 67  PSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKH 126
           P +  SS L ++P++ +  ++  SSS         S +C +CL++FE  D+LR+LP C H
Sbjct: 86  PETERSSVLDSLPIFKFSSVTRRSSS-------MNSGDCAVCLSKFEPEDQLRLLPLCCH 145

Query: 127 VFHKGCIDQWLPLKSLHCPLCRDP 151
            FH  CID WL + +  CPLCR P
Sbjct: 146 AFHADCIDIWL-VSNQTCPLCRSP 161

[Close]

BLAST of Clc01G20570 vs. ExPASy Swiss-Prot
Match: Q8H7N9 (E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-11
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 79  PVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQWLP 138
           P  +YGD+ +  ++  G         C +CLAEF   DELRVLP C HVFH  CID WL 
Sbjct: 113 PTAVYGDVKARMAAKSG------PLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWL- 172

Query: 139 LKSLHCPLCR 149
             ++ CPLCR
Sbjct: 173 AAAVTCPLCR 175

[Close]

BLAST of Clc01G20570 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 56  RRQLNSPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHG 115
           +RQL        S    + +  +PV++Y ++  +           E  +C +CL EF   
Sbjct: 105 QRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK----------EPFDCAVCLCEFSED 164

Query: 116 DELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCR 149
           D+LR+LPNC H FH  CID WL L +  CPLCR
Sbjct: 165 DKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]

BLAST of Clc01G20570 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 38/113 (33.63%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 53  TCVRRQLNSPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEF 112
           T ++ QL    +   S    S + T+PV+ Y  +     S +         +C +CL EF
Sbjct: 83  TALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPF---------DCPVCLCEF 142

Query: 113 EHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPVCSNY 166
           E  D+LR+LP C H FH  CID WL L    CPLCR   +    +   + S+Y
Sbjct: 143 ETEDKLRLLPKCSHAFHVECIDTWL-LSHSTCPLCRSNLLSGFSSHHNLSSSY 185

[Close]

BLAST of Clc01G20570 vs. ExPASy TrEMBL
Match: A0A0A0KKP7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNSVDDL YS RRLLKDSLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQLN
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELR 120
           SPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESR CVICLAEFE+GDELR
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRTCVICLAEFEYGDELR 143

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFGL 180
           VLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RPVCSNYW+RNPAFILAFGL
Sbjct: 144 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 203

Query: 181 GSSVPLPSQL 189
           GS+ PLPSQL
Sbjct: 204 GSNAPLPSQL 212

[Close]

BLAST of Clc01G20570 vs. ExPASy TrEMBL
Match: A0A5D3CLV8 (RING-H2 finger protein ATL72-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001270 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 157/191 (82.20%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKD-SLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQL 60
           MNSVDDL YS RRLLKD SLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  NSPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESRNCVICLAEFE+GDEL
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRNCVICLAEFEYGDEL 120

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFG 180
           RVLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RP+CSNYW RNPAFILAFG
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 180

Query: 181 LGSSVPLPSQL 189
           LGS+ PLPSQL
Sbjct: 181 LGSNAPLPSQL 190

[Close]

BLAST of Clc01G20570 vs. ExPASy TrEMBL
Match: A0A1S3B2S4 (RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 157/191 (82.20%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKD-SLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQL 60
           MNSVDDL YS RRLLKD SLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFG 180
           RVLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RP+CSNYW RNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSSVPLPSQL 189
           LGS+ PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]

BLAST of Clc01G20570 vs. ExPASy TrEMBL
Match: A0A6J1GEN4 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111453465 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.3e-69
Identity = 135/191 (70.68%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNS     Y+YRRLLKDSL + PFG  ER+  ICV SAIAA FV+SLF+SLFTC RRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFT--SLFESRNCVICLAEFEHGDEL 120
           S SSKPPSST S QL++MPVYIYGD     S+ Y FT  S FE+RNCVICLAEFE GDEL
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSSFEARNCVICLAEFELGDEL 120

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIR-PVCSNYWTRNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+ +I+EIGT+R PVC+N+W RNPAF+LAF 
Sbjct: 121 RVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFA 180

Query: 181 LGSSVPLPSQL 189
             S+ PLPSQL
Sbjct: 181 PASNAPLPSQL 186

[Close]

BLAST of Clc01G20570 vs. ExPASy TrEMBL
Match: A0A6J1IJG4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111477647 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.3e-68
Identity = 133/190 (70.00%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNS     Y+YRRLLKDSL + PFG  ER+  ICV SAIAA FV+SLF+SLFTC RRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFT-SLFESRNCVICLAEFEHGDELR 120
           S SSKPPSST S QL++MPVYIYGD     S+ Y FT S FE RNCVICL EFE GDELR
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSFEVRNCVICLGEFELGDELR 120

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIR-PVCSNYWTRNPAFILAFGL 180
           VLPNC H FHKGCIDQWLPL+SL CPLCR+ + +EIGT+R PVC+NYW RNPAF+LAF  
Sbjct: 121 VLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFAP 180

Query: 181 GSSVPLPSQL 189
            S+ PLPSQL
Sbjct: 181 ASNAPLPSQL 185

[Close]

BLAST of Clc01G20570 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-16
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 63  SSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLP 122
           SS  P     S + T+P+++Y   + +   + G TS    R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPV 162
            C H FH  CID+WL     +CPLCR   +   G + P+
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVLTPM 211

[Close]

BLAST of Clc01G20570 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-16
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 63  SSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLP 122
           SS  P     S + T+P+++Y   + +   + G TS    R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPV 162
            C H FH  CID+WL     +CPLCR   +   G + P+
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVLTPM 211

[Close]

BLAST of Clc01G20570 vs. TAIR 10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4 )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 67  PSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKH 126
           P +  SS L ++P++ +  ++  SSS         S +C +CL++FE  D+LR+LP C H
Sbjct: 86  PETERSSVLDSLPIFKFSSVTRRSSS-------MNSGDCAVCLSKFEPEDQLRLLPLCCH 145

Query: 127 VFHKGCIDQWLPLKSLHCPLCRDP 151
            FH  CID WL + +  CPLCR P
Sbjct: 146 AFHADCIDIWL-VSNQTCPLCRSP 161

[Close]

BLAST of Clc01G20570 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 101 ESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQW-LPLKSLHCPLCRDPTIEE 155
           ES  C +CL +FE+ DE+R L NC+H+FH+GC+D+W +    + CPLCR   I +
Sbjct: 85  ESECCAVCLYDFENDDEIRRLTNCRHIFHRGCLDRWMMGYNQMTCPLCRTQFIPD 139

[Close]

BLAST of Clc01G20570 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-12
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 101 ESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIE 154
           E  +C +CL+EFE  + LR+LP CKH FH  CID WL     +CPLCR P +E
Sbjct: 213 EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWL-RSHTNCPLCRAPIVE 264

The following BLAST results are available for this feature:

BLAST of Clc01G20570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881295.1	5.2e-85	83.60	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_011658497.1	2.3e-80	82.63	E3 ubiquitin-protein ligase RHA2B [Cucumis sativus]	[more]
KAA0025673.1	3.3e-79	82.20	RING-H2 finger protein ATL72-like [Cucumis melo var. makuwa] >TYK12545.1 RING-H2...	[more]
XP_008440820.1	3.3e-79	82.20	PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo]	[more]
KAG6603909.1	5.3e-69	70.68	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc01G20570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67YI6	1.3e-14	38.38	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q9LY41	4.0e-11	40.48	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]
Q8H7N9	5.2e-11	47.14	E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q8GW38	1.2e-10	36.56	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9ZV53	1.5e-10	33.63	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]

BLAST of Clc01G20570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKP7	1.1e-80	82.63	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 P...	[more]
A0A5D3CLV8	1.6e-79	82.20	RING-H2 finger protein ATL72-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3B2S4	1.6e-79	82.20	RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 S...	[more]
A0A6J1GEN4	3.3e-69	70.68	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111453465 ...	[more]
A0A6J1IJG4	6.3e-68	70.00	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111477647 PE...	[more]

BLAST of Clc01G20570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18930.1	9.4e-16	38.38	RING/U-box superfamily protein	[more]
AT3G18930.2	9.4e-16	38.38	RING/U-box superfamily protein	[more]
AT3G60220.1	2.8e-12	40.48	TOXICOS EN LEVADURA 4	[more]
AT1G63840.1	3.7e-12	47.27	RING/U-box superfamily protein	[more]
AT4G33565.1	4.8e-12	52.83	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..147 e-value: 5.4E-7 score: 39.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..148 e-value: 2.3E-12 score: 47.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..148 score: 12.25323
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 78..155 e-value: 2.4E-19 score: 70.3
None	No IPR available	PANTHER	PTHR45798:SF35	OS11G0149500 PROTEIN	coord: 10..185
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 10..185
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 104..148 e-value: 3.24165E-16 score: 67.2517
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 104..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G20570.1	Clc01G20570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane