Clc01G20230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G20230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	thioredoxin H-type-like
Location	ClcChr01: 32200267 .. 32201334 (-)
RNA-Seq Expression	Clc01G20230
Synteny	Clc01G20230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTCTTGGAACCACCAAATTCAGAAAGGCAATGCCTCTCAAGAACTGGTATAACCTTTTCAATTTCCATTCCTTCGCAATTCTGTTTTCTTTCTCCCCCTTCAATCGCTTTGTGTTTTCGCCATTACTTGATTTGATCCACAGTAATGCTTATTGATTTCAATGCATCGCCATTACTTGATTTCATCATCCGCACCACCTTCTTGTGTGTAATTCAAAATGATATTGATATGCTCGAGAAACTTTTCCATTCTTTTTCTTTGCTTTTGTGGTATGGTAGATAAAGTAGTAATCAAAGTGTGAAATGTTTCGAATCTTTCGTGCTTCCTTTTCTTTATTCAAACAATCAATACCATTTTTGTCTCCCACTTAATTGCTTTCCAGACCAAACAAATTGGATACCATCTGTAGTATATATTATTATATATTAGTACATTGATATGATTATACAAAGCCAATCCCAATCCAGTCTTTGACTAATTTTCACCACCAATCAACTCACGACAATAGAACCAATTTTCATGTAGTAAGGACTACCAATTATTGAGTTCTTGACATTTTAACTCACAGTACTTGTTTTATGAGTCCTGAAACTGATGCAGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTTGAGGTACTATAAATTGCCATTTATAAATCGCTCTTGTTTTTTTGTTGAACTCGAATATATATACCATCGATCAAGACATCAGAGAACTCAAATCTCTCTCTTGCTTTTCTCACTGTATGTGGCTTTTGTTAAAATGTGTTGATTGGTGCAGACGGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCTTGAAAGAAGGAAGAATTGTGGATAAGGTGGTTGGAGCTAAAAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCCACTGCTTCTGCCTGA

mRNA sequence

ATGGCAGCGGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTCTTGGAACCACCAAATTCAGAAAGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTTGAGACGGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCTTGAAAGAAGGAAGAATTGTGGATAAGGTGGTTGGAGCTAAAAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCCACTGCTTCTGCCTGA

Coding sequence (CDS)

ATGGCAGCGGCAGCAGCAGAGGGACGAGTCATCCGCTGTACCACCATTGATTCTTGGAACCACCAAATTCAGAAAGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTTCTAGACGAGCTTGCTCAAAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTTGAGACGGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCTTGAAAGAAGGAAGAATTGTGGATAAGGTGGTTGGAGCTAAAAAGGAAGAACTGCACCAGACTGTATTCAAGCACATGGCTGCCACTGCTTCTGCCTGA

Protein sequence

MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA

Homology

[Close]

BLAST of Clc01G20230 vs. NCBI nr
Match: XP_038882042.1 (thioredoxin H-type [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 4.1e-59
Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFP 60
           MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPF+DELAQKFP
Sbjct: 1   MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFVDELAQKFP 60

Query: 61  SVTFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 120
           SVTFLKVDVDDLE+VAKDWGVEAMPTFMFLKEG IVD+VVGAKKEELHQ + KHMAATAS
Sbjct: 61  SVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGSIVDRVVGAKKEELHQRILKHMAATAS 120

Query: 121 A 122
           A
Sbjct: 121 A 121

[Close]

BLAST of Clc01G20230 vs. NCBI nr
Match: KAG6603933.1 (hypothetical protein SDJN03_04542, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034113.1 hypothetical protein SDJN02_03840, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A AEGRVIRC TIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Clc01G20230 vs. NCBI nr
Match: XP_022950147.1 (thioredoxin H-type-like [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 6.0e-58
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A AEGRVIRC TIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGA+KEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGARKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Clc01G20230 vs. NCBI nr
Match: XP_022977568.1 (thioredoxin H-type [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 7.8e-58
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A AEGRVIRC TIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 121
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+S
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSS 118

[Close]

BLAST of Clc01G20230 vs. NCBI nr
Match: XP_023543830.1 (thioredoxin H-type-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A AEGRVI C TIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT
Sbjct: 2   AVAEGRVIHCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Clc01G20230 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.2e-46
Identity = 84/117 (71.79%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           AA EG+VI C T+++WN Q+QKGN ++ LIVVDFTASWCGPCRFIAPFL ELA+K P+VT
Sbjct: 2   AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 121
           FLKVDVD+L+TVA +W VE+MPTFMFLKEG+I+DKVVGAKK+EL QT+ KHMA  ++
Sbjct: 62  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAST 118

[Close]

BLAST of Clc01G20230 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 9.6e-43
Identity = 80/117 (68.38%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 5   AAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTF 64
           A EG+VI   T+D+WN  +QKG   ++LIVVDFTASWCGPC+FIA F  ELA+K P+VTF
Sbjct: 2   AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTF 61

Query: 65  LKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           LKVDVD+L++VA DW VEAMPTFMFLKEG+IVDKVVGAKK+EL QT+ KH+++T++A
Sbjct: 62  LKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTSTA 118

[Close]

BLAST of Clc01G20230 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-42
Identity = 75/113 (66.37%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A+ EG+VI C T+++WN Q+QK N S+ L+VVDFTASWCGPCRFIAPF  +LA+K P+V 
Sbjct: 2   ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMA 117
           FLKVD D+L++VA DW ++AMPTFMFLKEG+I+DKVVGAKK+EL  T+ KH+A
Sbjct: 62  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Clc01G20230 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-38
Identity = 72/121 (59.50%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 2   AAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPS 61
           A ++ EG+V  C  ++ WN   +KG  +++L+VVDFTASWCGPCRFIAP L ++A+K P 
Sbjct: 6   ATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPH 65

Query: 62  VTFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMA-ATAS 121
           V FLKVDVD+L+TV+ +W VEAMPTF+F+K+G+ VD+VVGAKKEEL QT+ KH A AT +
Sbjct: 66  VIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPATVT 125

[Close]

BLAST of Clc01G20230 vs. ExPASy Swiss-Prot
Match: Q39241 (Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-35
Identity = 65/117 (55.56%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 5   AAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTF 64
           A EG VI C T++ WN +++  N S++LIV+DFTASWC PCRFIAP   E+A+KF +V F
Sbjct: 2   AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVF 61

Query: 65  LKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
            K+DVD+L+ VA+++ VEAMPTF+F+KEG I+D+VVGA K+E+++ + KH    ASA
Sbjct: 62  FKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 118

[Close]

BLAST of Clc01G20230 vs. ExPASy TrEMBL
Match: A0A6J1GE02 (thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453323 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A AEGRVIRC TIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGA+KEEL QTVFKHMAAT+SA
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGARKEELQQTVFKHMAATSSA 119

[Close]

BLAST of Clc01G20230 vs. ExPASy TrEMBL
Match: A0A6J1IQD5 (thioredoxin H-type OS=Cucurbita maxima OX=3661 GN=LOC111477862 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A AEGRVIRC TIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT
Sbjct: 2   AVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 121
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAAT+S
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSS 118

[Close]

BLAST of Clc01G20230 vs. ExPASy TrEMBL
Match: A0A6J1HER7 (thioredoxin H-type OS=Cucurbita moschata OX=3662 GN=LOC111463317 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.9e-56
Identity = 108/119 (90.76%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 3   AAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSV 62
           AAAAEGRVIRC TIDSWN QIQKGNAS+ELIVVDF+ASWCGPCRFI PFL++LAQKFP+V
Sbjct: 2   AAAAEGRVIRCNTIDSWNQQIQKGNASEELIVVDFSASWCGPCRFIEPFLNQLAQKFPTV 61

Query: 63  TFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           TFLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHM+ATASA
Sbjct: 62  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMSATASA 120

[Close]

BLAST of Clc01G20230 vs. ExPASy TrEMBL
Match: A0A6J1KSA6 (thioredoxin H-type-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496792 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.1e-55
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 3   AAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSV 62
           AAAAEGRVIRC TI SWN QIQKGNAS+ELIVVDF+ASWCGPCRFI PFL++LAQKFP+V
Sbjct: 2   AAAAEGRVIRCNTIGSWNQQIQKGNASEELIVVDFSASWCGPCRFIEPFLNQLAQKFPTV 61

Query: 63  TFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
           TFLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHM+ATASA
Sbjct: 62  TFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMSATASA 120

[Close]

BLAST of Clc01G20230 vs. ExPASy TrEMBL
Match: A0A6J1BTW6 (thioredoxin H-type OS=Momordica charantia OX=3673 GN=LOC111005317 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.7e-55
Identity = 106/117 (90.60%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           AA+EGRVIRC T+D+WN QIQKGN SQELIVVDFTASWCGPCRFI PFLDELA K PSVT
Sbjct: 2   AASEGRVIRCNTVDAWNQQIQKGNGSQELIVVDFTASWCGPCRFIGPFLDELAHKCPSVT 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 121
           FLKVDVDDLE+VAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEEL QTVFKHMAATAS
Sbjct: 62  FLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATAS 118

[Close]

BLAST of Clc01G20230 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 173.7 bits (439), Expect = 8.9e-44
Identity = 75/113 (66.37%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVT 63
           A+ EG+VI C T+++WN Q+QK N S+ L+VVDFTASWCGPCRFIAPF  +LA+K P+V 
Sbjct: 2   ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 61

Query: 64  FLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMA 117
           FLKVD D+L++VA DW ++AMPTFMFLKEG+I+DKVVGAKK+EL  T+ KH+A
Sbjct: 62  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Clc01G20230 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 65/117 (55.56%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 5   AAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTF 64
           A EG VI C T++ WN +++  N S++LIV+DFTASWC PCRFIAP   E+A+KF +V F
Sbjct: 2   AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVF 61

Query: 65  LKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
            K+DVD+L+ VA+++ VEAMPTF+F+KEG I+D+VVGA K+E+++ + KH    ASA
Sbjct: 62  FKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGGLVASA 118

[Close]

BLAST of Clc01G20230 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-34
Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 0


Query: 4   AAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKF-PSV 63
           AA EG+VI C T D W  Q+ K   S +LIV+DFTASWC PCR IAP  ++LA+KF  S 
Sbjct: 2   AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSA 61

Query: 64  TFLKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATAS 121
            F KVDVD+L++VAK++GVEAMPTF+F+K G +VDK+VGA KE+L   + KH   T +
Sbjct: 62  IFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119

[Close]

BLAST of Clc01G20230 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-33
Identity = 63/117 (53.85%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 5   AAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTF 64
           AAEG VI C T++ W  +++  N S++LIV+DFTA+WC PCRFIAP   +LA+K   V F
Sbjct: 2   AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVF 61

Query: 65  LKVDVDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFKHMAATASA 122
            KVDVD+L TVA+++ V+AMPTF+F+KEG I + VVGA KEE+   + KH    A+A
Sbjct: 62  FKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAAA 118

[Close]

BLAST of Clc01G20230 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 110.9 bits (276), Expect = 7.1e-25
Identity = 48/105 (45.71%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 9   RVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVD 68
           RV++ ++   W     +   S +L+VVDF+ASWCGPCR I P +  +A KF  V F+K+D
Sbjct: 26  RVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLD 85

Query: 69  VDDLETVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELHQTVFK 114
           VD+L  VAK++ V AMPTF+ +K G+ +++++GAKK+EL + V K
Sbjct: 86  VDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130

The following BLAST results are available for this feature:

BLAST of Clc01G20230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882042.1	4.1e-59	94.21	thioredoxin H-type [Benincasa hispida]	[more]
KAG6603933.1	2.7e-58	95.76	hypothetical protein SDJN03_04542, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022950147.1	6.0e-58	94.92	thioredoxin H-type-like [Cucurbita moschata]	[more]
XP_022977568.1	7.8e-58	95.73	thioredoxin H-type [Cucurbita maxima]	[more]
XP_023543830.1	1.0e-57	94.92	thioredoxin H-type-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc01G20230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43636	4.2e-46	71.79	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
Q07090	9.6e-43	68.38	Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]
P29448	1.3e-42	66.37	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
P29449	4.2e-38	59.50	Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q39241	1.9e-35	55.56	Thioredoxin H5 OS=Arabidopsis thaliana OX=3702 GN=TRX5 PE=1 SV=1	[more]

BLAST of Clc01G20230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE02	2.9e-58	94.92	thioredoxin H-type-like OS=Cucurbita moschata OX=3662 GN=LOC111453323 PE=4 SV=1	[more]
A0A6J1IQD5	3.8e-58	95.73	thioredoxin H-type OS=Cucurbita maxima OX=3661 GN=LOC111477862 PE=4 SV=1	[more]
A0A6J1HER7	7.9e-56	90.76	thioredoxin H-type OS=Cucurbita moschata OX=3662 GN=LOC111463317 PE=4 SV=1	[more]
A0A6J1KSA6	5.1e-55	89.92	thioredoxin H-type-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496792 P...	[more]
A0A6J1BTW6	8.7e-55	90.60	thioredoxin H-type OS=Momordica charantia OX=3673 GN=LOC111005317 PE=4 SV=1	[more]

BLAST of Clc01G20230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51030.1	8.9e-44	66.37	thioredoxin H-type 1	[more]
AT1G45145.1	1.4e-36	55.56	thioredoxin H-type 5	[more]
AT1G19730.1	1.7e-34	56.78	Thioredoxin superfamily protein	[more]
AT5G42980.1	5.4e-33	53.85	thioredoxin 3	[more]
AT5G39950.1	7.1e-25	45.71	thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 33..41 score: 53.21 coord: 41..50 score: 65.28 coord: 80..91 score: 40.28
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..120 e-value: 1.6E-38 score: 133.4
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 5..119
None	No IPR available	PANTHER	PTHR10438:SF421	THIOREDOXIN H-TYPE-LIKE ISOFORM X1	coord: 5..119
None	No IPR available	CDD	cd02947	TRX_family	coord: 28..111 e-value: 4.65267E-35 score: 114.192
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 13..111 e-value: 6.7E-30 score: 103.1
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..117 score: 14.586654
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 34..52
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 7..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G20230.2	Clc01G20230.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006662	glycerol ether metabolic process
molecular_function	GO:0015035	protein-disulfide reductase activity