Clc01G19610 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G19610
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	U1 small nuclear ribonucleoprotein 70 kDa
Location	ClcChr01: 31821133 .. 31826550 (+)
RNA-Seq Expression	Clc01G19610
Synteny	Clc01G19610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGAATCCGGCCTTGCAGAGTAGTCTGTCTATAAATAGCGTCGATAAAACAATAAACCTTTTCCGCCTTTTGGCTGCCGCCTCTTCCACTCTCCGTTTTGACCCGACTGTACGAATTAGATCCCCCTAGCAAAAAACACTCACTAATGTTCTCCATCCCCTCCATTTGATTTCTTGTATCAATTCTCTGTAATCGTATTAGTCTGAGCGTCGATCGTGCGCCACCATGGGGGATTACAATGATGCCTTCATGCGGAATCAAAACGCGGCGGTTCAGGCTCGAACTAAGGCCCAGAATCGTGCCAATGTCCTTCAACTCAAACTGGTAGGTGGAATGCTTTCGATTATTGTTATAATTTCTATATAAGCCTTCGATTGTTCCTTTTTTTTCCATTTTTTTTTATTGAAGTTAGCTAGGGTTTCAAGAAGTCGTCTCGCATTCGTTAATTAGAAGAGATGCAGATTTGTGCATAATCGTTGTTGTAATGGTTATTGCGTATTCATGATGATTGATTTTCGTTTTCTTGGTTAGAGATGATAAATTAAGTTCTATCTGTTGAATGACTCGTATGATTGTTAACAACGTCTTGTCAATGAAATGTCTCGTTTCTTGTTTAAAGATTAAAATATATATAGTCAAAAGAACAGTGGTGTGATGCGACGACTTAATAATCGTTGAGGCCTGAGGATCGAAATTTTTTATTATGGTTTTCAAAGAAGCTACATGGGTTTGTTGAGCACTCGATTGTGGATTGTATCGGGTTCTTAATTTTCCTTATCGTGCAGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCACCTCTGGAGTTCAAACCTCCACCGGAGAAAAGAAAATGTCCACCACTAACAGGTTTATAGTAATTTTCAATCTCCTGAAGCTCTTCGATTTTTTATGTAGTTTTTTCCTTTATTTTTCTTTTCCGAGGGATCTAATTTTATCTCATTTTGTTTTGAAGGGATGGCCCAGTTTGTGAGTAATTTTGTAGAACCTGATGATCCGGAATATGCTCCCCCTGTTCAAAAGGGTGAAACTCCAGTAAGATAATTTACTTCTGAATGATTGTCTGAACCACTTTCCCCGTCTTCTAGGATTGAATTTCAAATCATTTGTACCCTCCCCCGAACATATATGTATGAATTATAAGGAAAGTGAGTATTACGTATTGTTATAACTTAGAGGCTGTTTGGCAGCTTGTGGTGCAAAATGGTTTGCTTTTAAACCCAGTTTTAGGAATTTAAATTAGGTAGCTTGTAAATTTTAACGACAGTGTGTAACAACTCATTTCCCCATGATTGTTGAAGGAAGTGATGCTAAAACTCTTTTAAACATCAGAAAGACAAGTATGGTTTAACAACTTTTTTTACTAAAATACAAGAAACAAATTTTGAAAATAACTTCTGTGCTGTCTCCTATTTAAGGTATTATCTTTGTCGATCTATGTTGCTCATTAGTGAGTTTTTAGCATTCCAAGTGATCGTTACTAGTTTTTGAAGACTGGATTTGCAAAACGATGGTGAATTGTGTATAAAGGCATGGGAATTAAGGAGTAACCACTTGAGATTCTTCGTAATCTGAAATCTTAACTTTTCAGGCAGAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAAGGTGCAGAGAAAGCTGCTGAGGAGCTGCCAAAATGTGATACATCTCTTCAGTTCTTAACTTGAATTTGTAGGCAAAAGTTTGTCAATGTCTTGTGTCTTACATATGTACTTTTGTGTAGATCTTGAACGTGATGATCCAAATGTTACTGGAGATCCATACAAGACACTCTTTGTGGCTAGACTGGTGTGTTAAATGTTCTGTACAGAAGTCTTTAATTTAAGTTTAATTTTTCACTGAAAATCCTTGTTACTCATTGGCAGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAGCGGGTAGGTATTTGAGCATCCTCATGGGGCTCGGTAAGAGGTTAATATTATGTGTGGTCAAATAAATACTTTTTACCATAAAAAATATTATTTGGGTAGATATCATGTTTTTTGGTCCATTTTCCTTTAAAACTATTTTCTAGAATCTATACCGTAATACCATTCTAAACCACCATGAATTGGTCTAATGGCATACCTAAGCATGGATTTTCTTGGATCAGTTGTTCAGGTAATAGATTTTCTTGTAATGTTTTGTGCTGCTGTAGTGACGATAAAATGGTTTATGCTTTCTCTTTAACTAACCCATCAGAAAAACTCCACTGGCCTTCCAAACATGTGTGGACATGCCAAACAGGTCTCTTATTTGTGTTTTCCCCCCTTCAACTTTCTCCCCATTTAAAGTAGTTAAATTTCTGGGTAAGTTTTAATGAGAGTAAAACATATTTCTACCTGACTGGGTCCTTATGGTGCAACCAAGTTTGAAGAAAGATTATCGCCAAACACCTCCCTGGATTCATCATTGATAATTCAAGCTCCTAATAGTCTCTCAGGTAAAGCTGCTGGTATGCAGTCTTGACTCTCATGTGCATTTCATTTTCCTCTTAGTGCCCGTGTCTTTGCCCAGATGTAGTTGGGCTAGAGAATTCTTGAGGCATGTTGTTAATAGGAAACTCCTTAGTAAAATTCTATACATCAAGAATTCCTGGTACGGAGGCAGTTATTCTACATTCAGCCAAGTGTTATTCATGTATTTCTATGGCTCTGATCCCAAACATGGTGCACTTCACCATGTGTTGAAAGCTGGAAATTTTAGATTGGGCAGTGGAGTGATGTACTTTTGCCTTTTGGCCTTCATAATGAAGCAACAAAGGAGATTGTCAACTTCCCTATTTTTCTGCCCTGGGTAAAACACATAGGGAGTATTAGCATCTCTTTCTCCTTTGAATTTTGTACTGCTTAGATTTTCTGCTGCTAAAAGTTTTACTTTTGGCTTTAAAGGCATCAAAAAATCTCGCCGTTGAGAAGATTTCCTGGTATTTCCTGTATTACATATACCTTTTTTCATTATTTGAAAAATAATTTCCCTGGTAAGGGGAGTTTAGTGTGTTCAACAACTGGTAAAATGGCCACAAATACTTCAGTTTTTCCGACTCTAGCTGGTGGCGATGCATCTCGCGATGGAAGCTCTATGATTTAAAGGTGAGCACGGCTAATTAGGCATAGTGCCTGTCTGCCGTGCCAATAGGATTAGCTTATAATAAACTTTCTTTCAGTACTTATCTAGCTATAAACTAAGAAAATCTTTATAGAGAATCAAGAATCTACAATGAATAGTGATATTGAACTATTCTTCTGCAATATAACTTCTCGTATTGTAACTTTTTGTGTTTTGCAGGTCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTACGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGGTTTGTTTCAATTAATTTGAATTTTGAACACTTTTCTATTTGTTTCATTTCTCCATTTGAAACTAATTAATCTACTCACCTCCATTTGGAACTATTCAGCTGCATATAAGCAAGCTGATGGTAGGAAGATCGATGGTAGAAGGGTACTAGTGGATGTAGAGCGAGGCAGAACAGTACCAAATTGGCGTCCCCGCCGGCTGGGTGGTGGTCTTGGAACTACCAGAGTGGGAGGTGAAGACAATAGCCAGAGGCACTCTGGAAGGTAGTTAATATGATTTCAACAACTCCTGCGCTTTCAAGTGCAAGCCATTGAAAAATATTAATGATTATTGTAGTATGAAACAAAACTAAATGCGTGATTAGGATTCTCAACCAGGTTCTTTTTCTTTTTTTTTTTTTTGTATTGGGCAGTTTTAATTTTTTGTTGATTGCTGAAAATTTGTAATGTTAAAATTGAATTTAATGTATTACATAAGCTGAAAGCATCTGTTATTTGTCCAGGGAACAACAGCAAGCTGGTGCACCATCTAGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCCATGGAGAGCGGTATGATGTTCCATATATTTTTCTTTTCATTTTGGATCAATATTTATGATTCTTTCAATTAATCATTTCAGCATGTGAAGGTAACTTCAGTTTATTGTTAATTCTAAGATAATATGTAATTGGGCTTCACTTCAATGTTTTCAGAGATAGGGAAAAGTCTTATGACAAAGGAAGAGACCGAGAAAGAGATAGAGAGAAGTCTCGCGAACGTTCCCATGAGAGATCTAAGGACCGTGACGTCAGAGAAGACAGGCATCACAGAGATCGTGATAGGACTAGGGATAGAGATAGGGATAGGGATAGAGAGAGAGATCGTGGCTATGAACGTGATAGAACACGTGATCGAGGACGGGATCGAGGTCGTGACTATGAGCGTGACAGAGATCGTGATCGCGATCGTCATCGGGATAGAGATAGGGAGAGGGATCGGGATCGGGATCATGAAGGGGGATATCCAGACACTGATCGTGGTCGCTCCCATGATAGGGACGATTATGATCGGGTTGAATCAAAATATGAAAAGGATAGACATGGTGATAGGGACAGGGATATTGATCGTGCTGAAACTGAGGATGGTCGTGGGTGGTATGATCAGCCTGACCATGGGCACAGACACCCAGACACTGATCATGATCCCCAGTACTATGATCACTTTGAACATAGCCGAAGTCGAGGGCAATATGATCACCCAGAAGGCCATCATGACCAAGATCGTTATGATCAGTATGATGATAGAATGGAGGATGATTACCATTATGAGCGTGGCACTTCTGAATCACATGATAGAGAGAGGTCTCGTGATTTAAATCATGAATATAAACGCAGTGAGAGATCTCATTCCAGAGAGTACTAGTGGCAGTGGTAAGTATCCGCTCACTTTCTTCCCTTTATAATTTATATAATTTATGAGCAGCAGCCCTTTCCCCATATGCATTTCTGAATTTTCTTTTCCAGGTTAAAGATGACATCCAAGGCCATGAAAATATTATGTAGCTGCTGTGTTCGGTGTCGGAATTGTCTTCTTTTGTCTTTTAATTGACCTATAGTTGCTCAAACAAGCATCGTTGATACGCCCGATGCTGTATGTTCTTGGGAGTTTCAGTTTCAGCCACTTTATGCAGATTTTTGCACAGTTTATTTATGTGCTAAAACTCCTAGACTTGCTGTGTATTATTTTGTGACCATGATTTTTAAGTTCCTAGAGTGGTTATAGAATTTTTTGTATGCTTGATTTGGTTGGACATCGTTTTGGTGCCAAGTAGGTCAAACACTGTGGAGAGGCTGTACGTTTGTTGTGGAAATTGTTTAAGGGTGGAACTCAAATTGTTCGTTATGATGAATTTTGAAAAGGTTTGATCAAA

mRNA sequence

GGAGAATCCGGCCTTGCAGAGTAGTCTGTCTATAAATAGCGTCGATAAAACAATAAACCTTTTCCGCCTTTTGGCTGCCGCCTCTTCCACTCTCCGTTTTGACCCGACTGTACGAATTAGATCCCCCTAGCAAAAAACACTCACTAATGTTCTCCATCCCCTCCATTTGATTTCTTGTATCAATTCTCTGTAATCGTATTAGTCTGAGCGTCGATCGTGCGCCACCATGGGGGATTACAATGATGCCTTCATGCGGAATCAAAACGCGGCGGTTCAGGCTCGAACTAAGGCCCAGAATCGTGCCAATGTCCTTCAACTCAAACTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCACCTCTGGAGTTCAAACCTCCACCGGAGAAAAGAAAATGTCCACCACTAACAGGGATGGCCCAGTTTGTGAGTAATTTTGTAGAACCTGATGATCCGGAATATGCTCCCCCTGTTCAAAAGGGTGAAACTCCAGCAGAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAAGGTGCAGAGAAAGCTGCTGAGGAGCTGCCAAAATATCTTGAACGTGATGATCCAAATGTTACTGGAGATCCATACAAGACACTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAGCGGTTTGAAGAAAGATTATCGCCAAACACCTCCCTGGATTCATCATTGATAATTCAAGCTCCTAATAGTCTCTCAGGTAAAGCTGCTGTGCCCGTGTCTTTGCCCAGATGTAGTTGGGCTAGAGAATTCTTGAGGCATGTTGTTAATAGGAAACTCCTTAGTAAAATTCTATACATCAAGAATTCCTGGTACGGAGGCAGTTATTCTACATTCAGCCAAGTGTTATTCATGTATTTCTATGGCTCTGATCCCAAACATGGTGCACTTCACCATGTGTTGAAAGCTGGAAATTTTAGATTGGGCAGTGGAGTGATGTACTTTTGCCTTTTGGCCTTCATAATGAAGCAACAAAGGAGATTGTCAACTTCCCTATTTTTCTGCCCTGGTTTTTCCGACTCTAGCTGGTGGCGATGCATCTCGCGATGGAAGCTCTATGATTTAAAGGTCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTACGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCATATAAGCAAGCTGATGGTAGGAAGATCGATGGTAGAAGGGTACTAGTGGATGTAGAGCGAGGCAGAACAGTACCAAATTGGCGTCCCCGCCGGCTGGGTGGTGGTCTTGGAACTACCAGAGTGGGAGGTGAAGACAATAGCCAGAGGCACTCTGGAAGGGAACAACAGCAAGCTGGTGCACCATCTAGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCCATGGAGAGCGAGATAGGGAAAAGTCTTATGACAAAGGAAGAGACCGAGAAAGAGATAGAGAGAAGTCTCGCGAACGTTCCCATGAGAGATCTAAGGACCGTGACGTCAGAGAAGACAGGCATCACAGAGATCGTGATAGGACTAGGGATAGAGATAGGGATAGGGATAGAGAGAGAGATCGTGGCTATGAACGTGATAGAACACGTGATCGAGGACGGGATCGAGGTCGTGACTATGAGCGTGACAGAGATCGTGATCGCGATCGTCATCGGGATAGAGATAGGGAGAGGGATCGGGATCGGGATCATGAAGGGGGATATCCAGACACTGATCGTGGTCGCTCCCATGATAGGGACGATTATGATCGGGTTGAATCAAAATATGAAAAGGATAGACATGGTGATAGGGACAGGGATATTGATCGTGCTGAAACTGAGGATGGTCGTGGGTGGTATGATCAGCCTGACCATGGGCACAGACACCCAGACACTGATCATGATCCCCAGTACTATGATCACTTTGAACATAGCCGAAGTCGAGGGCAATATGATCACCCAGAAGGCCATCATGACCAAGATCGTTATGATCAGTATGATGATAGAATGGAGGATGATTACCATTATGAGCGTGGCACTTCTGAATCACATGATAGAGAGAGGTCTCGTGATTTAAATCATGAATATAAACGCAGTGAGAGATCTCATTCCAGAGAGTACTAGTGGCAGTGGTTAAAGATGACATCCAAGGCCATGAAAATATTATGTAGCTGCTGTGTTCGGTGTCGGAATTGTCTTCTTTTGTCTTTTAATTGACCTATAGTTGCTCAAACAAGCATCGTTGATACGCCCGATGCTGTATGTTCTTGGGAGTTTCAGTTTCAGCCACTTTATGCAGATTTTTGCACAGTTTATTTATGTGCTAAAACTCCTAGACTTGCTGTGTATTATTTTGTGACCATGATTTTTAAGTTCCTAGAGTGGTTATAGAATTTTTTGTATGCTTGATTTGGTTGGACATCGTTTTGGTGCCAAGTAGGTCAAACACTGTGGAGAGGCTGTACGTTTGTTGTGGAAATTGTTTAAGGGTGGAACTCAAATTGTTCGTTATGATGAATTTTGAAAAGGTTTGATCAAA

Coding sequence (CDS)

ATGGGGGATTACAATGATGCCTTCATGCGGAATCAAAACGCGGCGGTTCAGGCTCGAACTAAGGCCCAGAATCGTGCCAATGTCCTTCAACTCAAACTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCACCTCTGGAGTTCAAACCTCCACCGGAGAAAAGAAAATGTCCACCACTAACAGGGATGGCCCAGTTTGTGAGTAATTTTGTAGAACCTGATGATCCGGAATATGCTCCCCCTGTTCAAAAGGGTGAAACTCCAGCAGAAAGGAGGGCTAGAATTCACTTGCTAAGAATTGAAAAAGGTGCAGAGAAAGCTGCTGAGGAGCTGCCAAAATATCTTGAACGTGATGATCCAAATGTTACTGGAGATCCATACAAGACACTCTTTGTGGCTAGACTGAATTATGAGACAACTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAGCGGTTTGAAGAAAGATTATCGCCAAACACCTCCCTGGATTCATCATTGATAATTCAAGCTCCTAATAGTCTCTCAGGTAAAGCTGCTGTGCCCGTGTCTTTGCCCAGATGTAGTTGGGCTAGAGAATTCTTGAGGCATGTTGTTAATAGGAAACTCCTTAGTAAAATTCTATACATCAAGAATTCCTGGTACGGAGGCAGTTATTCTACATTCAGCCAAGTGTTATTCATGTATTTCTATGGCTCTGATCCCAAACATGGTGCACTTCACCATGTGTTGAAAGCTGGAAATTTTAGATTGGGCAGTGGAGTGATGTACTTTTGCCTTTTGGCCTTCATAATGAAGCAACAAAGGAGATTGTCAACTTCCCTATTTTTCTGCCCTGGTTTTTCCGACTCTAGCTGGTGGCGATGCATCTCGCGATGGAAGCTCTATGATTTAAAGGTCCGATTGATTACGGACAAAGTGACAGGTAAACCTAAAGGCTACGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCATATAAGCAAGCTGATGGTAGGAAGATCGATGGTAGAAGGGTACTAGTGGATGTAGAGCGAGGCAGAACAGTACCAAATTGGCGTCCCCGCCGGCTGGGTGGTGGTCTTGGAACTACCAGAGTGGGAGGTGAAGACAATAGCCAGAGGCACTCTGGAAGGGAACAACAGCAAGCTGGTGCACCATCTAGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCCATGGAGAGCGAGATAGGGAAAAGTCTTATGACAAAGGAAGAGACCGAGAAAGAGATAGAGAGAAGTCTCGCGAACGTTCCCATGAGAGATCTAAGGACCGTGACGTCAGAGAAGACAGGCATCACAGAGATCGTGATAGGACTAGGGATAGAGATAGGGATAGGGATAGAGAGAGAGATCGTGGCTATGAACGTGATAGAACACGTGATCGAGGACGGGATCGAGGTCGTGACTATGAGCGTGACAGAGATCGTGATCGCGATCGTCATCGGGATAGAGATAGGGAGAGGGATCGGGATCGGGATCATGAAGGGGGATATCCAGACACTGATCGTGGTCGCTCCCATGATAGGGACGATTATGATCGGGTTGAATCAAAATATGAAAAGGATAGACATGGTGATAGGGACAGGGATATTGATCGTGCTGAAACTGAGGATGGTCGTGGGTGGTATGATCAGCCTGACCATGGGCACAGACACCCAGACACTGATCATGATCCCCAGTACTATGATCACTTTGAACATAGCCGAAGTCGAGGGCAATATGATCACCCAGAAGGCCATCATGACCAAGATCGTTATGATCAGTATGATGATAGAATGGAGGATGATTACCATTATGAGCGTGGCACTTCTGAATCACATGATAGAGAGAGGTCTCGTGATTTAAATCATGAATATAAACGCAGTGAGAGATCTCATTCCAGAGAGTACTAG

Protein sequence

MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSSLIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVLFMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSWWRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERDREKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRERDRGYERDRTRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDYDRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRGQYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY

Homology

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BLAST of Clc01G19610 vs. NCBI nr
Match: XP_038881482.1 (U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida])

HSP 1 Score: 867.8 bits (2241), Expect = 5.8e-248
Identity = 492/654 (75.23%), Postives = 500/654 (76.45%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVS+F EPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSSFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRHSGREQQQAGAPSRSEEPRAREDRH ERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHSGREQQQAGAPSRSEEPRAREDRHAERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRERDRGYER 480
           REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRERDRGY+R
Sbjct: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRERDRGYDR 480

Query: 481 DRTRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDYDRVE 540
           DRTRDRGRDRGRD++RDRDRDRDRHRDRDRERDRDRDHEGGYPD DRGRSHDRDDYDR+E
Sbjct: 481 DRTRDRGRDRGRDHDRDRDRDRDRHRDRDRERDRDRDHEGGYPDPDRGRSHDRDDYDRIE 507

Query: 541 SKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRGQYDH 600
           SKYEKDRHGDRDRDID AETEDGRGWYDQP+HGHRHPDTDHDPQYYDHFEH+RSRGQYDH
Sbjct: 541 SKYEKDRHGDRDRDIDHAETEDGRGWYDQPEHGHRHPDTDHDPQYYDHFEHNRSRGQYDH 507

Query: 601 PEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
            EGH DQDRYDQYDDRMEDDY YERGTSESHDRERSRDLNHEYKRSERSHSREY
Sbjct: 601 SEGHRDQDRYDQYDDRMEDDYPYERGTSESHDRERSRDLNHEYKRSERSHSREY 507

[Close]

BLAST of Clc01G19610 vs. NCBI nr
Match: KAG7026797.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 840.5 bits (2170), Expect = 9.9e-240
Identity = 495/691 (71.64%), Postives = 531/691 (76.85%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVS+F EPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKY---------------------------LERDDPNVTGDPYKTLFVARLNYETTESR 180
           LPK                            LERDDPNVTGDPYKTLFVARLNYET+ESR
Sbjct: 121 LPKCDNLFNTSTPFVKRSSMSCVLPTYFCADLERDDPNVTGDPYKTLFVARLNYETSESR 180

Query: 181 IKREFESYGPIKR--FEERLSPNTSLDSSLIIQAPNSLSGKAAVPVSLPRCSWAREFLRH 240
           IKREFESYGPIKR     +   N   + S     P+ L+      VSLPR S   EF RH
Sbjct: 181 IKREFESYGPIKRVAIMNQFMLNLQNNPSKRFHWPSELTTCQTATVSLPRHSCTIEFSRH 240

Query: 241 VVNRKLLSKILYIKNSWYGGSYSTFSQVLFMYFYGSDPKHGALHHVLKAGNFRLGSGVMY 300
            VNRK LSK+LYIKNSW+  +                                       
Sbjct: 241 DVNRKFLSKVLYIKNSWHQKN--------------------------------------- 300

Query: 301 FCLLAFIMKQQRRLSTSLFFCPGFSDSSWWRCISRWKLYDLKVRLITDKVTGKPKGYAFI 360
                F+++                                KVRLITDKVTGKPKGYAFI
Sbjct: 301 -----FVVE--------------------------------KVRLITDKVTGKPKGYAFI 360

Query: 361 EYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDNSQR 420
           EYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGE+NSQR
Sbjct: 361 EYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEENSQR 420

Query: 421 HSGREQQQAGAPSRSEEPRAREDRHGERDREKSYDKGRDRERDREKSRERSHERSKDRDV 480
           H+GREQQQ+GAPSRSEEPRAREDRHGERDREKSY+KGRDRER+REKSRERSH+RSKDRD+
Sbjct: 421 HAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSKDRDL 480

Query: 481 REDRHHRDRDRTRDRDRD----RDRERDRGYERDRT--RDRGRDRGRDYERDRDRDRDRH 540
           REDRHHRDRDRTRDRDRD    R+RERDRG++RDRT  RDRGRDRGRDYERDRDRDRDRH
Sbjct: 481 REDRHHRDRDRTRDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRDRDRH 540

Query: 541 RDRDRERDRDRDHEGGYPDTDRGRSHDRD-DYDRVESKYEKDRHGDRDRDIDRAETEDGR 600
           RDRDRERDRD +  GGY D DRGRSHDR+ DYDRV+SKYEKDRHGDRD+DID  ETEDG 
Sbjct: 541 RDRDRERDRDHE-GGGYADPDRGRSHDRESDYDRVDSKYEKDRHGDRDKDIDPGETEDGH 600

Query: 601 GWYDQPDHGHRH-PDTDHDPQYYDHFEHSRSRGQYDHPEGHHDQDRYDQYDDRMEDDYHY 655
           GWYDQP HGHRH PDTDHDPQYYDHFEH+RSR QY+HPE HH QDRYDQY DRMEDDYHY
Sbjct: 601 GWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYEHPE-HHGQDRYDQY-DRMEDDYHY 612

[Close]

BLAST of Clc01G19610 vs. NCBI nr
Match: XP_004143506.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN48823.1 hypothetical protein Csa_003241 [Cucumis sativus])

HSP 1 Score: 832.8 bits (2150), Expect = 2.1e-237
Identity = 481/658 (73.10%), Postives = 491/658 (74.62%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVSNF EPDDPEYAPPVQKGETP ERRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRHSGREQQQ+GAPSRSEEPR REDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHSGREQQQSGAPSRSEEPRVREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRD----RERDR 480
           REKSYDKGRDRERDREKSRE SHERSK+RDVREDRHHRDRDRTRDRDRDRD    R+RDR
Sbjct: 421 REKSYDKGRDRERDREKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRDRERDRDR 480

Query: 481 GYERDRTRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDY 540
           GY+RDRTRDRGRDRGRDYE  RDRDRDRHRDRDRE  R+RDHEGGYPD DRGRSHDRDDY
Sbjct: 481 GYDRDRTRDRGRDRGRDYE--RDRDRDRHRDRDRE--RERDHEGGYPDPDRGRSHDRDDY 505

Query: 541 DRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRG 600
           DRVESKYEKDRHGDRDRD+DRAETEDGRGWYDQP+HGHR  D DHDPQYYDHFEH+R RG
Sbjct: 541 DRVESKYEKDRHGDRDRDVDRAETEDGRGWYDQPEHGHR--DADHDPQYYDHFEHNRGRG 505

Query: 601 QYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
           QYD PEGH DQDRYDQYDDRM+DDYHYERG SESHDRERSRDLNHEYKRSERSHSREY
Sbjct: 601 QYDQPEGHRDQDRYDQYDDRMDDDYHYERGNSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]

BLAST of Clc01G19610 vs. NCBI nr
Match: XP_008440701.1 (PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 832.0 bits (2148), Expect = 3.5e-237
Identity = 484/658 (73.56%), Postives = 493/658 (74.92%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVSNF EPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRHSGREQQQ+GAPSRSEEPRAREDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHSGREQQQSGAPSRSEEPRAREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRE--RDRGY 480
           REKSYDKGRDRER+REKSRE SHERSK+RDVREDRHHRDRDRTRDRDRDRDRE  RDRGY
Sbjct: 421 REKSYDKGRDREREREKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRERDRDRGY 480

Query: 481 ERDRTRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDYDR 540
           +RDRTRDRGRDRGRDYE  RDRDRDRHRDRDRE  RDRDHEGGYPD DRGRSHDRDDYDR
Sbjct: 481 DRDRTRDRGRDRGRDYE--RDRDRDRHRDRDRE--RDRDHEGGYPDPDRGRSHDRDDYDR 505

Query: 541 VESKYEKDRHG--DRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRG 600
           VESKYEKDRHG  DRDRD+DRAETEDGRGWYDQP+HGHR  D DHDPQYYDHFEH+R RG
Sbjct: 541 VESKYEKDRHGDRDRDRDMDRAETEDGRGWYDQPEHGHR--DADHDPQYYDHFEHNRGRG 505

Query: 601 QYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
           QYD PEGH DQDRYDQYDDRM+DDYHYERG SESHDRERSRDLNHEYKRSERSHSREY
Sbjct: 601 QYDQPEGHRDQDRYDQYDDRMDDDYHYERGNSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]

BLAST of Clc01G19610 vs. NCBI nr
Match: XP_022132461.1 (U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia])

HSP 1 Score: 815.5 bits (2105), Expect = 3.4e-232
Identity = 474/660 (71.82%), Postives = 496/660 (75.15%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVSNF EPDDPEYAPPVQKGETPA+RRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAQRRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+N+QRHSGREQQQ+GAPSRSEEPR REDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENNQRHSGREQQQSGAPSRSEEPRGREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRD--RDRERDRGY 480
           REKS++KGRDRER+REKSRERSHERSKDRD+REDRHHRDRDRTRDRDRD  R+RERDRGY
Sbjct: 421 REKSHEKGRDREREREKSRERSHERSKDRDLREDRHHRDRDRTRDRDRDRERERERDRGY 480

Query: 481 ERDRT--RDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRD-D 540
           +RD+T  RDRGRDRGRDYERDRDRDRDRHRDRDRE  RDR+HE GYP+ DRGRSHDR+ D
Sbjct: 481 DRDKTRDRDRGRDRGRDYERDRDRDRDRHRDRDRE--RDRNHEDGYPEPDRGRSHDRESD 510

Query: 541 YDRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSR 600
           YDRVESKYEKDRHGDRDR+IDR ETEDGRGWYDQ +HGHRHPD DHDPQYYDHFEH+R R
Sbjct: 541 YDRVESKYEKDRHGDRDREIDRTETEDGRGWYDQSEHGHRHPDPDHDPQYYDHFEHNRGR 510

Query: 601 GQY-DHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
           GQY D+PEGHHDQDRYDQY DRMEDDYHYERGTSESHD+ERSRD+NHEY+RSERSHSREY
Sbjct: 601 GQYDDNPEGHHDQDRYDQY-DRMEDDYHYERGTSESHDKERSRDMNHEYRRSERSHSREY 510

[Close]

BLAST of Clc01G19610 vs. ExPASy Swiss-Prot
Match: Q42404 (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU1 PE=1 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.3e-106
Identity = 288/576 (50.00%), Postives = 325/576 (56.42%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPP TGMAQFVSNF EP DPEYAPP  + E P+++R RIH LR+EKG EKAAE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKREFESYGPIKR              
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        V L+TD++T KPKGYAFIEYMH RDMKAAYKQADG+KIDGRRVLVDV
Sbjct: 301 -------------VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEP-RAREDRHGER 420
           ERGRTVPNWRPRRLGGGLGT+RVGG +        EQQ  G  S+SEEP R RE      
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTSRVGGGEEIV----GEQQPQGRTSQSEEPSRPRE------ 409

Query: 421 DREKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRERDRGYE 480
           +REKS +KG++RER RE S E+  ERS+DR  RED+HHRDRD+   RDRDRD  RD    
Sbjct: 421 EREKSREKGKERERSRELSHEQPRERSRDRP-REDKHHRDRDQ-GGRDRDRDSRRD---- 409

Query: 481 RDRTRDRGRDRGRDYERDRDRDRD---RHRDRDRERDRDRDHEGG-YPDTDRGRSHDRDD 540
           RDRTRDRG DR R   RDRDR RD   R  DRDR R ++RD+EGG Y     GRS +RD 
Sbjct: 481 RDRTRDRG-DRDR---RDRDRGRDRTSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERDA 409

Query: 541 YDRVESK----YEKDRHGDRDR---DIDRAETEDGR 565
             R E +    Y +D  GD DR     D+ E +D R
Sbjct: 541 EYRGEPEETRGYYEDDQGDTDRYSHRYDKMEEDDFR 409

[Close]

BLAST of Clc01G19610 vs. ExPASy Swiss-Prot
Match: P09406 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 5.0e-45
Identity = 200/583 (34.31%), Postives = 255/583 (43.74%), Query Frame = 0


Query: 42  LTANLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F   +DP  APP  + E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAERRARIHLLRIEKGAEKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  ER  R    +IE+  +    EL  +   +D N  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRFEERLSPNTSLDSSLIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRK 221
           EFE YGPIKR                                            H+V  K
Sbjct: 125 EFEVYGPIKRI-------------------------------------------HIVYNK 184

Query: 222 LLSKILYIKNSWYGGSYSTFSQVLFMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLA 281
                                        GS+                            
Sbjct: 185 -----------------------------GSEG--------------------------- 244

Query: 282 FIMKQQRRLSTSLFFCPGFSDSSWWRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHK 341
                                                        +GKP+GYAFIEY H+
Sbjct: 245 ---------------------------------------------SGKPRGYAFIEYEHE 304

Query: 342 RDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGR- 401
           RDM +AYK ADG+KIDGRRVLVDVERGRTV  WRPRRLGGGLG TR GG D + RHSGR 
Sbjct: 305 RDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 364

Query: 402 ------EQQQAGAPSRSEEPRAREDRHGERDREKSYDKGRDRERDREK-SRERSHERSKD 461
                 E+ +     R E  R RE    ER R +S ++ R + R REK  R+R+ E+SKD
Sbjct: 365 DTSRYDERDRERERDRRERSREREKEPRERRRSRSRER-RRKSRSREKEERKRTREKSKD 424

Query: 462 RDVREDRHHRDRD-------RTRDRDRDRDRER--------------------------- 521
           +D  +D+ ++DRD       R R R+RDRDRE+                           
Sbjct: 425 KDKEKDKDNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQDDAQIGDLGI 431

Query: 522 ----------DRGYERDRTRDRGRDRG-RDYERDRDRDRDR---HRDRDRERDRDRDHEG 564
                     ++  ERDR RDR R++G +D ++DRDRDRDR   HRDRDRE+DRDRD   
Sbjct: 485 DGIELKQEPEEKSRERDRERDRDREKGEKDRDKDRDRDRDRRRSHRDRDREKDRDRDR-- 431

[Close]

BLAST of Clc01G19610 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-42
Identity = 199/614 (32.41%), Postives = 263/614 (42.83%), Query Frame = 0


Query: 42  LTANLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F   +DP  APP  + E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAERRARIHLLRIEKGAEKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  ER  R    +IE+  +    EL  +   +D N  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRFEERLSPNTSLDSSLIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRK 221
           EFE YGPIKR                                                  
Sbjct: 125 EFEVYGPIKR-------------------------------------------------- 184

Query: 222 LLSKILYIKNSWYGGSYSTFSQVLFMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLA 281
                                                                       
Sbjct: 185 ------------------------------------------------------------ 244

Query: 282 FIMKQQRRLSTSLFFCPGFSDSSWWRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHK 341
                                                + ++ +K +GKP+GYAFIEY H+
Sbjct: 245 -------------------------------------IHMVYNKRSGKPRGYAFIEYEHE 304

Query: 342 RDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGRE 401
           RDM +AYK ADG+KIDGRRVLVDVERGRTV  WRPRRLGGGLG TR GG D + RHSGR+
Sbjct: 305 RDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 364

Query: 402 QQQAGAPSRSEEPRAREDRHGERD-REKSYDKGRDRERDREKSRE-RSHERSKDRDVRED 461
                  SR +E     DR  ERD RE+S ++ ++RER R +SRE R   RS++++ R+ 
Sbjct: 365 D-----TSRYDE--RDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKR 424

Query: 462 RHHRDRDRTRDRDRDRDRERDRGYERDRTRDRGRDRGRDYERDRDRDR------------ 521
              R RD+ +D+D+D+D+E+D+  +RDR R R R R R  ERDRDR++            
Sbjct: 425 SRERSRDKDKDKDKDKDKEKDKDKDRDRKR-RSRSRERKRERDRDREKKEDRVEGEVPES 457

Query: 522 -------------------------DRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDYD 581
                                    +++RDRDRERDR++D +    D DR R   R   D
Sbjct: 485 VDVPQDDAQTGDLGIDGIELKQEPEEKNRDRDRERDREKDRD---KDRDRDRDRRRSHRD 457

Query: 582 RVESK-YEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRG 611
           R   K  E+DR   RDRD DR    D +   D+ D G +  +   D           S+ 
Sbjct: 545 RERDKDRERDRDRRRDRDRDRDRDRDHKRERDRGDRGEKREERVPDNGMVMEQAEETSQD 457

[Close]

BLAST of Clc01G19610 vs. ExPASy Swiss-Prot
Match: P08621 (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-41
Identity = 185/585 (31.62%), Postives = 244/585 (41.71%), Query Frame = 0


Query: 42  LTANLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F   +DP  APP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAERRARIHLLRIEKGAEKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  ER  R    +IE+  ++   EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRFEERLSPNTSLDSSLIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRK 221
           EFE YGPIKR                                                  
Sbjct: 125 EFEVYGPIKR-------------------------------------------------- 184

Query: 222 LLSKILYIKNSWYGGSYSTFSQVLFMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLA 281
                                                                       
Sbjct: 185 ------------------------------------------------------------ 244

Query: 282 FIMKQQRRLSTSLFFCPGFSDSSWWRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHK 341
                                                + ++  K +GKP+GYAFIEY H+
Sbjct: 245 -------------------------------------IHMVYSKRSGKPRGYAFIEYEHE 304

Query: 342 RDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGRE 401
           RDM +AYK ADG+KIDGRRVLVDVERGRTV  WRPRRLGGGLG TR GG D + RHSGR+
Sbjct: 305 RDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 364

Query: 402 QQQAGAPSRSEEPRAREDRHGERDREKSYDKGRDRERDREKSRERSHERSKDRDVR---E 461
                       P    DR  +R+RE+     R+R R+R+K RER   RS+DR  R    
Sbjct: 365 DTSRYDERPGPSPLPHRDRDRDRERER-----RERSRERDKERERRRSRSRDRRRRSRSR 424

Query: 462 DRHHRDRDRTRDRDRDRDRERDRGYERDRTR----------------------------- 521
           D+  R R R R +D+DRDR+R     R+R R                             
Sbjct: 425 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDD 430

Query: 522 ---------------DRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGR 575
                          ++GRDR R+  R    +R+R RDRDR+RDRDR+H+ G   ++RGR
Sbjct: 485 GPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGR 430

[Close]

BLAST of Clc01G19610 vs. ExPASy Swiss-Prot
Match: Q1RMR2 (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 9.2e-39
Identity = 186/586 (31.74%), Postives = 242/586 (41.30%), Query Frame = 0


Query: 42  LTANLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++  F   +DP  APP  + E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAERRARIHLLRIEKGAEKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKR 161
           T  ER  R    +IE+  ++   EL  +   +DPN  GD +KTLFVAR+NY+TTES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRFEERLSPNTSLDSSLIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRK 221
           EFE YGPIKR                                                  
Sbjct: 125 EFEVYGPIKR-------------------------------------------------- 184

Query: 222 LLSKILYIKNSWYGGSYSTFSQVLFMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLA 281
                                                                       
Sbjct: 185 ------------------------------------------------------------ 244

Query: 282 FIMKQQRRLSTSLFFCPGFSDSSWWRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHK 341
                                                + ++  K +GKP+GYAFIEY H+
Sbjct: 245 -------------------------------------IHMVYSKRSGKPRGYAFIEYEHE 304

Query: 342 RDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGRE 401
           RDM +AYK ADG+KIDGRRVLVDVERGRTV  WRPRRLGGGLG TR GG D + RHSGR+
Sbjct: 305 RDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 364

Query: 402 QQQAGAPSRSEEPRAREDRHGERDREKSYDKGRDRERDREKSRERSHERSKDRDVR---E 461
                       P    DR  +R+RE+     R+R R+R+K RER   RS+DR  R    
Sbjct: 365 DTSRYDERPGPSPLPHRDRDRDRERER-----RERSRERDKERERRRSRSRDRRRRSRSR 424

Query: 462 DRHHRDRDRTRDRDRDRDRERDRGYERDRTR----------------------------- 521
           D+  R R R R +D+DRDR+R     R+R R                             
Sbjct: 425 DKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGGGGDMAEPSEAGDAP 432

Query: 522 --------------DRGRDRGRDYERDRDRDR--DRHRDRDRERDRDRDHEGGYPDTDRG 575
                         D   ++GRD +RDR R    +R R RDR+RDRDR+H+ G    DRG
Sbjct: 485 PDDGPPGELGPDGPDGPEEKGRDRDRDRRRSHRSERERRRDRDRDRDREHKRGERGGDRG 432

[Close]

BLAST of Clc01G19610 vs. ExPASy TrEMBL
Match: A0A0A0KGZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502610 PE=4 SV=1)

HSP 1 Score: 832.8 bits (2150), Expect = 1.0e-237
Identity = 481/658 (73.10%), Postives = 491/658 (74.62%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVSNF EPDDPEYAPPVQKGETP ERRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRHSGREQQQ+GAPSRSEEPR REDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHSGREQQQSGAPSRSEEPRVREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRD----RERDR 480
           REKSYDKGRDRERDREKSRE SHERSK+RDVREDRHHRDRDRTRDRDRDRD    R+RDR
Sbjct: 421 REKSYDKGRDRERDREKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRDRERDRDR 480

Query: 481 GYERDRTRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDY 540
           GY+RDRTRDRGRDRGRDYE  RDRDRDRHRDRDRE  R+RDHEGGYPD DRGRSHDRDDY
Sbjct: 481 GYDRDRTRDRGRDRGRDYE--RDRDRDRHRDRDRE--RERDHEGGYPDPDRGRSHDRDDY 505

Query: 541 DRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRG 600
           DRVESKYEKDRHGDRDRD+DRAETEDGRGWYDQP+HGHR  D DHDPQYYDHFEH+R RG
Sbjct: 541 DRVESKYEKDRHGDRDRDVDRAETEDGRGWYDQPEHGHR--DADHDPQYYDHFEHNRGRG 505

Query: 601 QYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
           QYD PEGH DQDRYDQYDDRM+DDYHYERG SESHDRERSRDLNHEYKRSERSHSREY
Sbjct: 601 QYDQPEGHRDQDRYDQYDDRMDDDYHYERGNSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]

BLAST of Clc01G19610 vs. ExPASy TrEMBL
Match: A0A1S3B1S2 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucumis melo OX=3656 GN=LOC103485041 PE=4 SV=1)

HSP 1 Score: 832.0 bits (2148), Expect = 1.7e-237
Identity = 484/658 (73.56%), Postives = 493/658 (74.92%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVSNF EPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRHSGREQQQ+GAPSRSEEPRAREDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHSGREQQQSGAPSRSEEPRAREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRE--RDRGY 480
           REKSYDKGRDRER+REKSRE SHERSK+RDVREDRHHRDRDRTRDRDRDRDRE  RDRGY
Sbjct: 421 REKSYDKGRDREREREKSREHSHERSKERDVREDRHHRDRDRTRDRDRDRDRERDRDRGY 480

Query: 481 ERDRTRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRDDYDR 540
           +RDRTRDRGRDRGRDYE  RDRDRDRHRDRDRE  RDRDHEGGYPD DRGRSHDRDDYDR
Sbjct: 481 DRDRTRDRGRDRGRDYE--RDRDRDRHRDRDRE--RDRDHEGGYPDPDRGRSHDRDDYDR 505

Query: 541 VESKYEKDRHG--DRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSRG 600
           VESKYEKDRHG  DRDRD+DRAETEDGRGWYDQP+HGHR  D DHDPQYYDHFEH+R RG
Sbjct: 541 VESKYEKDRHGDRDRDRDMDRAETEDGRGWYDQPEHGHR--DADHDPQYYDHFEHNRGRG 505

Query: 601 QYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
           QYD PEGH DQDRYDQYDDRM+DDYHYERG SESHDRERSRDLNHEYKRSERSHSREY
Sbjct: 601 QYDQPEGHRDQDRYDQYDDRMDDDYHYERGNSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]

BLAST of Clc01G19610 vs. ExPASy TrEMBL
Match: A0A6J1BSC4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC111005312 PE=4 SV=1)

HSP 1 Score: 815.5 bits (2105), Expect = 1.6e-232
Identity = 474/660 (71.82%), Postives = 496/660 (75.15%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVSNF EPDDPEYAPPVQKGETPA+RRARIHLLRIEKGAEKAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAQRRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+N+QRHSGREQQQ+GAPSRSEEPR REDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENNQRHSGREQQQSGAPSRSEEPRGREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRD--RDRERDRGY 480
           REKS++KGRDRER+REKSRERSHERSKDRD+REDRHHRDRDRTRDRDRD  R+RERDRGY
Sbjct: 421 REKSHEKGRDREREREKSRERSHERSKDRDLREDRHHRDRDRTRDRDRDRERERERDRGY 480

Query: 481 ERDRT--RDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRD-D 540
           +RD+T  RDRGRDRGRDYERDRDRDRDRHRDRDRE  RDR+HE GYP+ DRGRSHDR+ D
Sbjct: 481 DRDKTRDRDRGRDRGRDYERDRDRDRDRHRDRDRE--RDRNHEDGYPEPDRGRSHDRESD 510

Query: 541 YDRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRHPDTDHDPQYYDHFEHSRSR 600
           YDRVESKYEKDRHGDRDR+IDR ETEDGRGWYDQ +HGHRHPD DHDPQYYDHFEH+R R
Sbjct: 541 YDRVESKYEKDRHGDRDREIDRTETEDGRGWYDQSEHGHRHPDPDHDPQYYDHFEHNRGR 510

Query: 601 GQY-DHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSREY 655
           GQY D+PEGHHDQDRYDQY DRMEDDYHYERGTSESHD+ERSRD+NHEY+RSERSHSREY
Sbjct: 601 GQYDDNPEGHHDQDRYDQY-DRMEDDYHYERGTSESHDKERSRDMNHEYRRSERSHSREY 510

[Close]

BLAST of Clc01G19610 vs. ExPASy TrEMBL
Match: A0A6J1HIB1 (U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC111463239 PE=4 SV=1)

HSP 1 Score: 787.3 bits (2032), Expect = 4.8e-224
Identity = 463/662 (69.94%), Postives = 490/662 (74.02%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVS+F EPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KA EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRH+GREQQQ+GAPSRSEEPRAREDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHAGREQQQSGAPSRSEEPRAREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRD----RDRERDR 480
           REKSY+KGRDRER+REKSRERSH+RSKDRD+REDRHHRDRDRT DRDRD    R+RERDR
Sbjct: 421 REKSYEKGRDREREREKSRERSHDRSKDRDLREDRHHRDRDRTIDRDRDREKERERERDR 480

Query: 481 GYERDRT--RDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRD 540
           G++RDRT  RDRGRDRGRDYERDRDRDRDRHRDRDRE  RDRDHEGG+ D DRGRSHDR+
Sbjct: 481 GHDRDRTRDRDRGRDRGRDYERDRDRDRDRHRDRDRE--RDRDHEGGFADPDRGRSHDRE 511

Query: 541 -DYDRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRH-PDTDHDPQYYDHFEHS 600
            DYDR++SKYEKDRHGDRD+DID  ETEDG GWYDQP HGHRH PDTDHDPQYYDHFEH+
Sbjct: 541 SDYDRIDSKYEKDRHGDRDKDIDPGETEDGHGWYDQPAHGHRHPPDTDHDPQYYDHFEHN 511

Query: 601 RSRGQYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSR 655
           RSR QYDHPE HH QDRYDQY DRMEDDY YERGTSE+ DRERSRDLNHEY+R+ERSHSR
Sbjct: 601 RSREQYDHPE-HHGQDRYDQY-DRMEDDYRYERGTSETRDRERSRDLNHEYRRTERSHSR 511

[Close]

BLAST of Clc01G19610 vs. ExPASy TrEMBL
Match: A0A6J1KS72 (U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC111496769 PE=4 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 1.1e-223
Identity = 463/662 (69.94%), Postives = 490/662 (74.02%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPPLTGMAQFVS+F EPDDPEYAPPVQ+GETP++RRARIHLLRIEKGA+KAAEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           LPKYLERDDPNVTGDPYKTLFVARLNYET+ESRIKREFESYGPIKR              
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV
Sbjct: 301 -------------VRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEPRAREDRHGERD 420
           ERGRTVPNWRPRRLGGGLGTTRVGGE+NSQRH+GREQQQ+GAPSRSEEPRAREDRHGERD
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHAGREQQQSGAPSRSEEPRAREDRHGERD 420

Query: 421 REKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRD----RDRERDR 480
           REKSY+KGRDRER+REKSRERSH+RSKD D+REDRHHRDRDRTRDRDRD    R+RER+R
Sbjct: 421 REKSYEKGRDREREREKSRERSHDRSKDHDLREDRHHRDRDRTRDRDRDREKERERERER 480

Query: 481 GYERDRT--RDRGRDRGRDYERDRDRDRDRHRDRDRERDRDRDHEGGYPDTDRGRSHDRD 540
           G++RDRT  RDRGRDRGRDYERDRDRDRDRHRDRDRE  RDRDH GGY D DRGRSHDR+
Sbjct: 481 GHDRDRTRDRDRGRDRGRDYERDRDRDRDRHRDRDRE--RDRDHGGGYADPDRGRSHDRE 511

Query: 541 -DYDRVESKYEKDRHGDRDRDIDRAETEDGRGWYDQPDHGHRH-PDTDHDPQYYDHFEHS 600
            DYDRV+SKYEKDRHGDRD+DID  ETEDG GWYDQP HGHRH PDTDHDPQYYDHFEH+
Sbjct: 541 SDYDRVDSKYEKDRHGDRDKDIDPGETEDGHGWYDQPVHGHRHPPDTDHDPQYYDHFEHN 511

Query: 601 RSRGQYDHPEGHHDQDRYDQYDDRMEDDYHYERGTSESHDRERSRDLNHEYKRSERSHSR 655
           RSR QYDHPE HH QDRYDQY DRMEDDY YERGTSE+ DRERSRDLNHEY+R++RSHSR
Sbjct: 601 RSREQYDHPE-HHGQDRYDQY-DRMEDDYRYERGTSETRDRERSRDLNHEYRRADRSHSR 511

[Close]

BLAST of Clc01G19610 vs. TAIR 10
Match: AT3G50670.1 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 388.7 bits (997), Expect = 9.6e-108
Identity = 288/576 (50.00%), Postives = 325/576 (56.42%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPP TGMAQFVSNF EP DPEYAPP  + E P+++R RIH LR+EKG EKAAE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRFEERLSPNTSLDSS 180
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKREFESYGPIKR              
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR-------------- 180

Query: 181 LIIQAPNSLSGKAAVPVSLPRCSWAREFLRHVVNRKLLSKILYIKNSWYGGSYSTFSQVL 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 240

Query: 241 FMYFYGSDPKHGALHHVLKAGNFRLGSGVMYFCLLAFIMKQQRRLSTSLFFCPGFSDSSW 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 300

Query: 301 WRCISRWKLYDLKVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDV 360
                        V L+TD++T KPKGYAFIEYMH RDMKAAYKQADG+KIDGRRVLVDV
Sbjct: 301 -------------VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDV 360

Query: 361 ERGRTVPNWRPRRLGGGLGTTRVGGEDNSQRHSGREQQQAGAPSRSEEP-RAREDRHGER 420
           ERGRTVPNWRPRRLGGGLGT+RVGG +        EQQ  G  S+SEEP R RE      
Sbjct: 361 ERGRTVPNWRPRRLGGGLGTSRVGGGEEIV----GEQQPQGRTSQSEEPSRPRE------ 409

Query: 421 DREKSYDKGRDRERDREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRDRDRERDRGYE 480
           +REKS +KG++RER RE S E+  ERS+DR  RED+HHRDRD+   RDRDRD  RD    
Sbjct: 421 EREKSREKGKERERSRELSHEQPRERSRDRP-REDKHHRDRDQ-GGRDRDRDSRRD---- 409

Query: 481 RDRTRDRGRDRGRDYERDRDRDRD---RHRDRDRERDRDRDHEGG-YPDTDRGRSHDRDD 540
           RDRTRDRG DR R   RDRDR RD   R  DRDR R ++RD+EGG Y     GRS +RD 
Sbjct: 481 RDRTRDRG-DRDR---RDRDRGRDRTSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERDA 409

Query: 541 YDRVESK----YEKDRHGDRDR---DIDRAETEDGR 565
             R E +    Y +D  GD DR     D+ E +D R
Sbjct: 541 EYRGEPEETRGYYEDDQGDTDRYSHRYDKMEEDDFR 409

[Close]

BLAST of Clc01G19610 vs. TAIR 10
Match: AT3G50670.2 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 268.5 bits (685), Expect = 1.4e-71
Identity = 130/166 (78.31%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60
           MGD  D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSNFVEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120
           PPEKRKCPP TGMAQFVSNF EP DPEYAPP  + E P+++R RIH LR+EKG EKAAE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKR 167
           L KY   +DPN TGDPYKTLFV+RLNYE++ES+IKREFESYGPIKR
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR 166

[Close]

BLAST of Clc01G19610 vs. TAIR 10
Match: AT5G53440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-07
Identity = 88/209 (42.11%), Postives = 106/209 (50.72%), Query Frame = 0


Query: 398 QQAGAPSRSEEP---RAREDRHGERDREKSYDKGRDRERDREKSRE----RSHERSKDRD 457
           +Q G   R + P     R D    RD  K   K +D +   E   E       ER++D D
Sbjct: 251 KQKGDKQRDDRPTKEHLRSDEKLTRDESKKKSKFQDNDHGHEPDSELDGYHERERNRDYD 310

Query: 458 VREDRHHRDRDRTRDRDRDRDRERDRGYERDRTRDRGRDRGRDYERDRDRDRDRHRDRDR 517
              DR+ RDR+RTRDRDRD +R+RDR  +RDR RDR R   RDYE DR  DRD   DRDR
Sbjct: 311 RESDRNERDRERTRDRDRDYERDRDRDRDRDRERDRDR---RDYEHDRYHDRD--WDRDR 370

Query: 518 ERDRDRDHEGGYPDTDRGRSHDRD-----DYDRVESKYEKDRHGDRDRDIDRAETEDGRG 577
            RDRDRDHE       R R+HDR+     DY     + + DR  D DRD+ R + + GR 
Sbjct: 371 SRDRDRDHE-------RDRTHDREKDRSRDYYHDGKRSKSDRERDNDRDVSRLDDQSGR- 430

Query: 578 WYDQPDHGHRHPDTDHDPQYYDHFEHSRS 595
            Y     G R PD      Y D    SRS
Sbjct: 431 -YKDRRDGRRSPDYQ---DYQDVITGSRS 442

The following BLAST results are available for this feature:

BLAST of Clc01G19610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881482.1	5.8e-248	75.23	U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida]	[more]
KAG7026797.1	9.9e-240	71.64	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita argyrosperma subsp. argyros...	[more]
XP_004143506.1	2.1e-237	73.10	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN48823.1 hypothet...	[more]
XP_008440701.1	3.5e-237	73.56	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo]	[more]
XP_022132461.1	3.4e-232	71.82	U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]	[more]

BLAST of Clc01G19610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42404	1.3e-106	50.00	U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU...	[more]
P09406	5.0e-45	34.31	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis OX=8355 GN=snrnp70 P...	[more]
Q66II8	1.4e-42	32.41	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
P08621	1.2e-41	31.62	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=...	[more]
Q1RMR2	9.2e-39	31.74	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 ...	[more]

BLAST of Clc01G19610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGZ1	1.0e-237	73.10	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502610 PE=4 SV...	[more]
A0A1S3B1S2	1.7e-237	73.56	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucumis melo OX=3656 GN=LOC10348504...	[more]
A0A6J1BSC4	1.6e-232	71.82	U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1HIB1	4.8e-224	69.94	U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KS72	1.1e-223	69.94	U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Clc01G19610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50670.1	9.6e-108	50.00	U1 small nuclear ribonucleoprotein-70K	[more]
AT3G50670.2	1.4e-71	78.31	U1 small nuclear ribonucleoprotein-70K	[more]
AT5G53440.1	7.3e-07	42.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 139..359 e-value: 3.8E-9 score: 46.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 313..356 e-value: 7.4E-9 score: 35.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 313..363 score: 10.257856
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 126..397 e-value: 3.3E-32 score: 113.2
IPR022023	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	PFAM	PF12220	U1snRNP70_N	coord: 41..129 e-value: 6.4E-15 score: 55.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 406..654
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 368..654
None	No IPR available	PANTHER	PTHR13952:SF22	SUBFAMILY NOT NAMED	coord: 1..167
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 313..504
None	No IPR available	PANTHER	PTHR13952:SF22	SUBFAMILY NOT NAMED	coord: 313..504
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 1..167
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 313..390
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 128..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G19610.2	Clc01G19610.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding