Clc01G19370 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G19370
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 31656760 .. 31657590 (+)
RNA-Seq Expression	Clc01G19370
Synteny	Clc01G19370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCGACAGAAGCACCAAGAAAGCCAACCCATTCCCTTGAGGGTCGAGCTTCGCTGCCAAGGAATCAGGCGACAGGTCAAAAGCAAGCTCAATTTCACAAAAGCACATGTATCAATGAGATTAGAGATTAGTTGTACCAGTATAATATTTTTGTCTGAAGAAGCTTTCAAGATCTTGTCTTGTCGGTGACTGTCTAGTTTTGAATCCCATGTTTTGAAGCTTCTTCATGTTATAAAACGCTACTACTTGCTTACTCCATCCTAGTTGACAGCTAACAACTAAACTTTCTTCACTCCATGAGATCCCTACGATTTGCTATCTTTCTGATTTTCTTCTTCTACTTTGCTCTAGTAGGGCATGGACGTGCAAAATCCAATGGAATAGTGGTGGGTTCCATTAAATCCTTCAATTTGGTAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGTTCATACTGTGTGTTAAATGACGGTTCTTACGTTTGGGGTGAAACAGGGAAGACCCGGGTGTCAAAAAGCCAATGTTGAATGCAAAGAGGGGGGCGGAAGAAAAGAGAATGTTTTTGAACATGAAGACTATGTCTACACTCAATCTCTCCCTTAGACTATGTTTCCTACTTCAATGCCTGAGATAAGGGGGAAATCGAAACCTGTCTCTAAGCTAATTTATCAAGTACCTGCAGCATTTTACAAGTCAATTTGAAGCTCCAAACTTCTTTCCTTTGTAGAATCTGCAAATCCTCTGAAGATGACGTTTCTGGCTGCGTAATAAATTTTGCCTTTGTATTTGCAAGAATAAAGGGA

mRNA sequence

ATGCATGCGACAGAAGCACCAAGAAAGCCAACCCATTCCCTTGAGGGTCGAGCTTCGCTGCCAAGGAATCAGGCGACAGGGCATGGACGTGCAAAATCCAATGGAATAGTGGTGGGTTCCATTAAATCCTTCAATTTGGGAAGACCCGGGTGTCAAAAAGCCAATGTTGAATGCAAAGAGGGGGGCGGAAGAAAAGAGAATGTTTTTGAACATGAAGACTATGTCTACACTCAATCTCTCCCTTAGACTATGTTTCCTACTTCAATGCCTGAGATAAGGGGGAAATCGAAACCTGTCTCTAAGCTAATTTATCAAGTACCTGCAGCATTTTACAAGTCAATTTGAAGCTCCAAACTTCTTTCCTTTGTAGAATCTGCAAATCCTCTGAAGATGACGTTTCTGGCTGCGTAATAAATTTTGCCTTTGTATTTGCAAGAATAAAGGGA

Coding sequence (CDS)

ATGCATGCGACAGAAGCACCAAGAAAGCCAACCCATTCCCTTGAGGGTCGAGCTTCGCTGCCAAGGAATCAGGCGACAGGGCATGGACGTGCAAAATCCAATGGAATAGTGGTGGGTTCCATTAAATCCTTCAATTTGGGAAGACCCGGGTGTCAAAAAGCCAATGTTGAATGCAAAGAGGGGGGCGGAAGAAAAGAGAATGTTTTTGAACATGAAGACTATGTCTACACTCAATCTCTCCCTTAG

Protein sequence

MHATEAPRKPTHSLEGRASLPRNQATGHGRAKSNGIVVGSIKSFNLGRPGCQKANVECKEGGGRKENVFEHEDYVYTQSLP

Homology

[Close]

BLAST of Clc01G19370 vs. NCBI nr
Match: KAE8647580.1 (hypothetical protein Csa_003027 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 28 HGRAKSNGIVVGSIKSFNLGRPGCQKANVECKEGGGRKENVFEHEDYVYTQSLP 82
          HGRA SNGIVVGSIKSFNLGR GCQK NVEC++G GRKENVFEHEDYVYTQSLP
Sbjct: 21 HGRATSNGIVVGSIKSFNLGRSGCQKVNVECEKGDGRKENVFEHEDYVYTQSLP 74

[Close]

BLAST of Clc01G19370 vs. NCBI nr
Match: KAE9601283.1 (hypothetical protein Lalb_Chr13g0296161 [Lupinus albus])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 28 HGRAKSNGIVVGSIKSFNLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
          HGR   N  VV S  S    R GC+K   ECKEG GG KE  FE+EDYVYT SLP
Sbjct: 23 HGRVVINKGVVSSSSSTTTTRDGCEKQRSECKEGKGGSKEMEFENEDYVYTNSLP 77

[Close]

BLAST of Clc01G19370 vs. NCBI nr
Match: KAF1887834.1 (hypothetical protein Lal_00023842 [Lupinus albus])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 28  HGRAKSNGIVVGSIKSFNLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
           HGR   N  VV S  S    R GC+K   ECKEG GG KE  FE+EDYVYT SLP
Sbjct: 475 HGRVVINKGVVSSSSSTTTTRDGCEKQRSECKEGKGGSKEMEFENEDYVYTNSLP 529

[Close]

BLAST of Clc01G19370 vs. NCBI nr
Match: TKY73914.1 (hypothetical protein E2542_SST02671 [Spatholobus suberectus])

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 29  GRAKSNGIVVGSIKSFNLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
           G A +N  VV S  S  +GR GC+K   ECKEG GG ++ V E+EDY+YT SLP
Sbjct: 96  GEAVTNERVVVSKSSTTVGRGGCEKQGFECKEGNGGLEDTVLENEDYIYTNSLP 149

[Close]

BLAST of Clc01G19370 vs. NCBI nr
Match: KAF7834232.1 (putative transmembrane protein [Senna tora])

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 33 SNGIVVGSIKSF------NLGRPGCQKANVECKEGGGR-KENVFEHEDYVYTQSLP 82
          SN +VVGS  S       N    GC+K  VECKEG G  +ENV E+EDY+YT SLP
Sbjct: 32 SNELVVGSGSSSSPNVRRNGNNGGCEKQGVECKEGNGEWEENVVENEDYIYTNSLP 87

[Close]

BLAST of Clc01G19370 vs. ExPASy TrEMBL
Match: A0A7N2LYV5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 29  GRAKSNGIVVGSI-KSFNLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
           G+A +N ++VGS   S N GR  C K  VECKEG GG +EN +E+EDY+YT SLP
Sbjct: 61  GKADTNELLVGSAGTSVNEGRAECSKDAVECKEGNGGSEENAYENEDYIYTNSLP 115

[Close]

BLAST of Clc01G19370 vs. ExPASy TrEMBL
Match: A0A6A5NJ21 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00023842 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 28  HGRAKSNGIVVGSIKSFNLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
           HGR   N  VV S  S    R GC+K   ECKEG GG KE  FE+EDYVYT SLP
Sbjct: 475 HGRVVINKGVVSSSSSTTTTRDGCEKQRSECKEGKGGSKEMEFENEDYVYTNSLP 529

[Close]

BLAST of Clc01G19370 vs. ExPASy TrEMBL
Match: A0A6A4PI88 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr13g0296161 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 28 HGRAKSNGIVVGSIKSFNLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
          HGR   N  VV S  S    R GC+K   ECKEG GG KE  FE+EDYVYT SLP
Sbjct: 23 HGRVVINKGVVSSSSSTTTTRDGCEKQRSECKEGKGGSKEMEFENEDYVYTNSLP 77

[Close]

BLAST of Clc01G19370 vs. ExPASy TrEMBL
Match: A0A2N9EH86 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6179 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 45 NLGRPGCQKANVECKEG-GGRKENVFEHEDYVYTQSLP 82
          N GR  C K  VECKEG GG +ENVFE+EDY+YT SLP
Sbjct: 12 NEGRAECSKDGVECKEGNGGSEENVFENEDYIYTNSLP 49

[Close]

BLAST of Clc01G19370 vs. ExPASy TrEMBL
Match: A0A7J6EBF5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_026065 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-04
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 28 HGR----AKSNGIVVGSIKSFNLGRPGCQK-ANVECKEGGGRKENVFEHEDYVYTQSLP 82
          HG+    + +N   V S  S N+GR  C K  NVECK+   ++++VFE EDY+YT SLP
Sbjct: 23 HGKVDPTSNNNSTTVASENSLNVGRAECGKEQNVECKKRSDQEDDVFEDEDYIYTNSLP 81

The following BLAST results are available for this feature:

BLAST of Clc01G19370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647580.1	4.8e-19	88.89	hypothetical protein Csa_003027 [Cucumis sativus]	[more]
KAE9601283.1	1.4e-05	58.18	hypothetical protein Lalb_Chr13g0296161 [Lupinus albus]	[more]
KAF1887834.1	1.4e-05	58.18	hypothetical protein Lal_00023842 [Lupinus albus]	[more]
TKY73914.1	6.7e-05	53.70	hypothetical protein E2542_SST02671 [Spatholobus suberectus]	[more]
KAF7834232.1	7.4e-04	53.57	putative transmembrane protein [Senna tora]	[more]

BLAST of Clc01G19370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G19370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2LYV5	3.8e-06	56.36	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A5NJ21	6.5e-06	58.18	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00023842 PE=4 SV=1	[more]
A0A6A4PI88	6.5e-06	58.18	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr13g0296161 PE=4 SV=1	[more]
A0A2N9EH86	1.2e-04	68.42	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6179 PE=4 SV=1	[more]
A0A7J6EBF5	8.0e-04	45.76	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_026065 PE=4 SV=1	[more]

BLAST of Clc01G19370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G19370.2	Clc01G19370.2	mRNA