Clc01G19360 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G19360
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 31654928 .. 31656871 (-)
RNA-Seq Expression	Clc01G19360
Synteny	Clc01G19360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTTTTGTGAAATTGAGCTTGCTTTTGACCTGTCGCCTGATTCCTTGGCAGCGAAGCTCGACCCTCAAGGGAATGGGTTGGCTTTCTTGGTGCTTCTGTCGCATGCATCCATAAACAAATTAAGGGGAGCTGATGTGCTTGGAAAGTTGTCATTAATTTGGTTTTATCTTCAAGATTCTCCGAGCTGTCACTTTTCTCTTGGTGTCTGGTTGCTGATCCGCGCTCACGTTGCTAGCCACTCACTCATCCCCCACCGCCAGCCTACAGGTTCGAGCTTTATTTTCTTAATTATTTTAATCTTATTGACTGGATATGGAACTAATATGAGCCATCTAAGATCATCAGATTGTGACAAGGCAGTCGCTGCTCTTATTAAGATGCCATTTGAATCCCGTAGTGCAGATCTTATGTAGAAAATTATGAACAATATAACAGAATAATTTGGTCAATATATTAGGAAAGTCACATAAGATGCCATTTTCTGTCATTAAAATCACGTAGTGCAGATCTTATGTAGAAAATCATGAAAAATTCAACAGATTGAATTTGTCAATATATTAGGAGCGCACAATGTGATCGTTCCTATGCTTTAAAAGGAATCATTTTTAATATGTTAGAGTGCGTGTTAGGTAATGTGTTGCCATAGAATATTGCAAGTTTTTTCTGAAATAAATAAAATATTGCAAGTTTTCCTTTTTTTTTTTTTTTAAATAAATAAATAAATATTGCAAGTTGTTTTAAGCCTACACTAAATTTGTGTTATAAATAGTATTTAAATAATGGATGGGTTTGTAAACTAAATCATGAAAATTTATTTCTTTTGGCTCATTAGCTATTCAGAAGCTTGTTTATATATTCTGACATGACATTGAAATTCCCACTGCTTTTAATTATTGACGTTTTTGCTTAAAGGCATTTAGTTACACGTTCTCGGAATTCTATTAGACCTCGGATAGAGCTTTTCCAACTCTCCAAAATTTTGGTCTACTTCATTATTATTCCCAAAATGATTTTTTGGTAGAGTGCAGAAACCTTAATTTTGGTTTGAACTACCAAGAAGGTTCACAATCTGAAATGTCTTGTTTATAATTTGAAATAGATATGCTTTAAGCCAATAATAGCGGAAGAGTCAAACTTATAATATTAAATTTTGAGTCTTTTACTTTTGGCTTTGGTTAATTTTGATCTTTATACTTTTAAAAATGTTCATTTTGGTTTTTTTATTTTCAAATTTGGTTTATTTTGGTCTATATACCATTAAAAGGTGACTATATTGATTTGTTCACTTTCATTTTTATTTTATTTTAAACATACCATAATAATTAATTTTAAAAGTATAAAGACTAAAAATGACATTTTGAAAATATAGAATCAAGGCAAACCGAATCTCCAAAATAGTATTAATATTAATTATATATTGCTTTAGAAACCAGACTTTCCATAGTTGGCCCGGCCATACTTACTGTGGAACCAACAAATGCAATAAAATAAAATACTCCTAGAACTTTTGTATCATTATTTGAGAGGGAGGGCTAATTTCTTCCACTTTATCCAATCACTTTTTAGCTCTTACACTTTCAACAATCAATATCAAGAGTTTATTAAGATAAATTTGTGTATTTGTTGTGTTTCACACAAATAATAATAATAATAATAAATTGTATATTTGTTGAATGTTTAAGTCAAGCTTGTTGTTGTGTTCAGGTAAGAAGGTTTGGATTCAGCCAAGCCAAGTCAAGCCAAGGCAATGGAAAGGGGGGCAGTATTTTCCCCTCAAAAGGCCACAGAGTTGGCACTTGCCACTTGCCAGGGGTCTGGTGGATGGCTATGTTGGGTATGTGTTGTGTGTTGAAGTGAGGATGTGGCCATCTATAAGTCCAAAACTGTCAGGTACTATAGCTTTTACATTTCCACAGAGGCCAAACTGGAAATGCAAATGA

mRNA sequence

ATGTGCTTTTGTGAAATTGAGCTTGCTTTTGACCTGTCGCCTGATTCCTTGGCAGCGAAGCTCGACCCTCAAGGGAATGGGTTGGCTTTCTTGGTGCTTCTGTCGCATGCATCCATAAACAAATTAAGGGGAGCTGATGTGCTTGGAAAGTTGTCATTAATTTGGTTTTATCTTCAAGATTCTCCGAGCTGTCACTTTTCTCTTGGTGTCTGGTTGCTGATCCGCGCTCACGTTGCTAGCCACTCACTCATCCCCCACCGCCAGCCTACAGGTTCGAGCTTTATTTTCTTAATTATTTTAATCTTATTGACTGGATATGGAACTAATATGAGCCATCTAAGATCATCAGATTGTGACAAGGCAGTCGCTGCTCTTATTAAGATGCCATTTGAATCCCGTAGTAAGAAGGTTTGGATTCAGCCAAGCCAAGTCAAGCCAAGGCAATGGAAAGGGGGGCAGTATTTTCCCCTCAAAAGGCCACAGAGTTGGCACTTGCCACTTGCCAGGGGTCTGGTGGATGGCTATGTTGGGTATGTGTTGTGTGTTGAAGTGAGGATGTGGCCATCTATAAGTCCAAAACTGTCAGGTACTATAGCTTTTACATTTCCACAGAGGCCAAACTGGAAATGCAAATGA

Coding sequence (CDS)

ATGTGCTTTTGTGAAATTGAGCTTGCTTTTGACCTGTCGCCTGATTCCTTGGCAGCGAAGCTCGACCCTCAAGGGAATGGGTTGGCTTTCTTGGTGCTTCTGTCGCATGCATCCATAAACAAATTAAGGGGAGCTGATGTGCTTGGAAAGTTGTCATTAATTTGGTTTTATCTTCAAGATTCTCCGAGCTGTCACTTTTCTCTTGGTGTCTGGTTGCTGATCCGCGCTCACGTTGCTAGCCACTCACTCATCCCCCACCGCCAGCCTACAGGTTCGAGCTTTATTTTCTTAATTATTTTAATCTTATTGACTGGATATGGAACTAATATGAGCCATCTAAGATCATCAGATTGTGACAAGGCAGTCGCTGCTCTTATTAAGATGCCATTTGAATCCCGTAGTAAGAAGGTTTGGATTCAGCCAAGCCAAGTCAAGCCAAGGCAATGGAAAGGGGGGCAGTATTTTCCCCTCAAAAGGCCACAGAGTTGGCACTTGCCACTTGCCAGGGGTCTGGTGGATGGCTATGTTGGGTATGTGTTGTGTGTTGAAGTGAGGATGTGGCCATCTATAAGTCCAAAACTGTCAGGTACTATAGCTTTTACATTTCCACAGAGGCCAAACTGGAAATGCAAATGA

Protein sequence

MCFCEIELAFDLSPDSLAAKLDPQGNGLAFLVLLSHASINKLRGADVLGKLSLIWFYLQDSPSCHFSLGVWLLIRAHVASHSLIPHRQPTGSSFIFLIILILLTGYGTNMSHLRSSDCDKAVAALIKMPFESRSKKVWIQPSQVKPRQWKGGQYFPLKRPQSWHLPLARGLVDGYVGYVLCVEVRMWPSISPKLSGTIAFTFPQRPNWKCK

Homology

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BLAST of Clc01G19360 vs. NCBI nr
Match: XP_038881745.1 (uncharacterized protein LOC120073162 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-36
Identity = 93/158 (58.86%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 19  AKLDPQGNGLAFLVLLSHASINKLRGADVLGKLSLIWFYLQDSPSCHFSLGVWLLIRAHV 78
           AKLDPQGNGLAFLV LSH SINKLRGADVLGKLSLIWFYLQDSPSCHFSLGVWLLI AHV
Sbjct: 31  AKLDPQGNGLAFLVPLSHPSINKLRGADVLGKLSLIWFYLQDSPSCHFSLGVWLLIHAHV 90

Query: 79  ASHSLIPHRQPTGSSFIFLIILILLTGYGTNMSHLRSSDCDKAVAALIKMPFESRSKKVW 138
           ASHSL PHRQPTG                                           K VW
Sbjct: 91  ASHSLTPHRQPTG-------------------------------------------KMVW 140

Query: 139 IQPSQVKPRQWKGGQYFPLKRPQSWHLPLARGLVDGYV 177
           I  +  K     G  +FP K  QS HLPLARGLVDGYV
Sbjct: 151 ISQANGK----GGAPFFPSK-SQSCHLPLARGLVDGYV 140

The following BLAST results are available for this feature:

BLAST of Clc01G19360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881745.1	3.0e-36	58.86	uncharacterized protein LOC120073162 [Benincasa hispida]	[more]

BLAST of Clc01G19360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G19360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G19360 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G19360.2	Clc01G19360.2	mRNA