Clc01G19200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G19200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase RHA2B-like
Location	ClcChr01: 31565211 .. 31565857 (+)
RNA-Seq Expression	Clc01G19200
Synteny	Clc01G19200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAGACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTCGCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGTAACAGTATATATAGATTTTTCTAGGGCGAAACACCAATTTTATTTTGCTCATCACAGAATAGAATTAATTAAATAATATAGAATGTTGATTGTCTGTAGATTAACTAGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG

mRNA sequence

ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAGACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTCGCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG

Coding sequence (CDS)

ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTCCACACAATGACCGCAGTCTTCTTCACCCTTTTACTTCTCGAATTCGTTATTCTCATTCGTACCATCTTCGGCTTGAGACCTAACGCCGACAAGCGCATAATCACGACGGCGCAGTTTTTGAAACTCATCGAGGAGAAGAATCCCACGATCCGATTCTCCAATAAGGTCACCTCAAGTTTTGCCGATCAGTGTGCCGTTTGCCTCTCTGAATTTGAGGAAGGGGAGAAGGTACGGAAATTGCAATGCAACCACACTTTTCATAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTCGCTACTTGTCCGCTTTGCCGTAGTAAGGTTTTGCCGGACGATATCGTCGCCGGCTACCATAGACTGCGAGACCGTGTAGAGTACGACGGCAGTGACGAGGAGCTCATCTTTTTGTTATCGGCATTACATGGGAAATATTGTTTTCTCCCTTCAGTGACGAGCAATAGCGTTAGGGAACAGCTTGTTTCTGGTTCGATTGATCTGTAG

Protein sequence

MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGKYCFLPSVTSNSVREQLVSGSIDL

Homology

[Close]

BLAST of Clc01G19200 vs. NCBI nr
Match: XP_038883588.1 (E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida])

HSP 1 Score: 310.8 bits (795), Expect = 7.4e-81
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR++TTAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVVTTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKLTSSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. NCBI nr
Match: KAA0036272.1 (putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa])

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. NCBI nr
Match: XP_008440648.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 8.2e-80
Identity = 151/163 (92.64%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH---GKYCFLP 161
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH    +Y  +P
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVP 163

[Close]

BLAST of Clc01G19200 vs. NCBI nr
Match: XP_022963436.1 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_023517189.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7026818.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKR+I TAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. NCBI nr
Match: XP_022132528.1 (E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKR+ITT Q+ KLIEE+NPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+TSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 22  LLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSE 81
           LL  F   +R++  L P++   ++ T+    L ++ N    FS + + + A  C VCLS+
Sbjct: 22  LLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSK 81

Query: 82  FEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
            + GE+VRKL C H FHK CL+ WL+     CPLCRS +LP
Sbjct: 82  LKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Clc01G19200 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of Clc01G19200 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.9e-12
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 59  PTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 118
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 119 KVLPDD 125
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of Clc01G19200 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-11
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 53  LIEEKNPTIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLC 112
           LI E  P I+F     S     + CAVCL EFE  +++R L+ C H FH+ CLD W+   
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 113 FATCPLCRSKVLPDDI 126
             TCPLCR+  +PD++
Sbjct: 130 QKTCPLCRTPFVPDEM 145

[Close]

BLAST of Clc01G19200 vs. ExPASy Swiss-Prot
Match: Q0VD51 (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 73  DQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
           D CA+CL E+E+G+K+R L C+H +H  C+D WL     TCP+C+ KV+P
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287

[Close]

BLAST of Clc01G19200 vs. ExPASy TrEMBL
Match: A0A5A7SYH1 (Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002540 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. ExPASy TrEMBL
Match: A0A1S3B160 (probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC103485001 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.0e-80
Identity = 151/163 (92.64%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKR+ITTAQFLKLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEDKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH---GKYCFLP 161
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH    +Y  +P
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHVFESRYFLVP 163

[Close]

BLAST of Clc01G19200 vs. ExPASy TrEMBL
Match: A0A0A0KM08 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.8e-80
Identity = 148/154 (96.10%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKR+ITTAQF KLIE+KNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNSDKRVITTAQFFKLIEDKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNKVT S ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKVTPSIADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. ExPASy TrEMBL
Match: A0A6J1HG49 (E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463642 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.5e-79
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKR+I TAQFLKLIEEKNPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. ExPASy TrEMBL
Match: A0A6J1BWI1 (E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC111005363 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPT 60
           MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKR+ITT Q+ KLIEE+NPT
Sbjct: 1   MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPGADKRVITTTQYFKLIEERNPT 60

Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           IRFSNK+TSS ADQCAVCLSEFEEG+KVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV
Sbjct: 61  IRFSNKLTSSPADQCAVCLSEFEEGDKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120

Query: 121 LPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG 155
           LPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHG
Sbjct: 121 LPDDVVAGYHRLRDRVEYDGSDEELIFLLSALHG 154

[Close]

BLAST of Clc01G19200 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-15
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 22  LLLEFVILIRTIFGLRPNADKRIITTAQFLKLIEEKNPTIRFSNKVTSSFADQCAVCLSE 81
           LL  F   +R++  L P++   ++ T+    L ++ N    FS + + + A  C VCLS+
Sbjct: 22  LLATFFRHVRSLL-LFPSSAPVVVVTSNLSVLADQLNLNRLFSYRYSDNAASDCIVCLSK 81

Query: 82  FEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLP 123
            + GE+VRKL C H FHK CL+ WL+     CPLCRS +LP
Sbjct: 82  LKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]

BLAST of Clc01G19200 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-14
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 75  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR 132
           C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Sbjct: 86  CVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQR 142

[Close]

BLAST of Clc01G19200 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-13
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 59  PTIRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRS 118
           PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR 
Sbjct: 200 PTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL-HNSCPVCRF 259

Query: 119 KVLPDD 125
           ++  DD
Sbjct: 260 ELPTDD 264

[Close]

BLAST of Clc01G19200 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 61  IRFSNKVTSSFADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKV 120
           I+   K  S    QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +
Sbjct: 476 IKLYTKSQSEDPSQCYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 535

Query: 121 LPDDIVAGYH 131
              D  +  H
Sbjct: 536 CRHDPSSEQH 545

[Close]

BLAST of Clc01G19200 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-12
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 53  LIEEKNPTIRFSNKVTS--SFADQCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLC 112
           LI E  P I+F     S     + CAVCL EFE  +++R L+ C H FH+ CLD W+   
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 113 FATCPLCRSKVLPDDI 126
             TCPLCR+  +PD++
Sbjct: 130 QKTCPLCRTPFVPDEM 145

The following BLAST results are available for this feature:

BLAST of Clc01G19200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883588.1	7.4e-81	97.40	E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]	[more]
KAA0036272.1	2.2e-80	97.40	putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa] >TYK12666....	[more]
XP_008440648.1	8.2e-80	92.64	PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]	[more]
XP_022963436.1	1.5e-78	94.81	E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata] >XP_02351...	[more]
XP_022132528.1	1.0e-77	93.51	E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]	[more]

BLAST of Clc01G19200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU51	2.8e-14	39.60	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	2.4e-13	56.14	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q8LPN7	9.9e-12	43.94	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9XF92	6.4e-11	43.42	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q0VD51	1.1e-10	50.00	E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1	[more]

BLAST of Clc01G19200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYH1	1.0e-80	97.40	Putative E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B160	4.0e-80	92.64	probable E3 ubiquitin-protein ligase RHA2B OS=Cucumis melo OX=3656 GN=LOC1034850...	[more]
A0A0A0KM08	6.8e-80	96.10	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G501220 P...	[more]
A0A6J1HG49	7.5e-79	94.81	E3 ubiquitin-protein ligase RHA2B-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1BWI1	4.8e-78	93.51	E3 ubiquitin-protein ligase RHA2B-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Clc01G19200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01150.1	2.0e-15	39.60	RING-H2 finger protein 2B	[more]
AT1G15100.1	1.7e-14	56.14	RING-H2 finger A2A	[more]
AT3G19950.1	7.0e-13	43.94	RING/U-box superfamily protein	[more]
AT5G45290.1	2.0e-12	41.43	RING/U-box superfamily protein	[more]
AT3G61460.1	4.6e-12	43.42	brassinosteroid-responsive RING-H2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 75..116 e-value: 1.5E-6 score: 37.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 73..117 e-value: 7.6E-13 score: 48.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 75..117 score: 12.725326
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..124 e-value: 3.0E-20 score: 73.2
None	No IPR available	PANTHER	PTHR47662:SF1	E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED	coord: 1..156
None	No IPR available	PANTHER	PTHR47662	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 74..117 e-value: 3.79923E-19 score: 74.5705
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 74..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G19200.2	Clc01G19200.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane