Clc01G18480 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G18480
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	MADS-box protein SVP-like
Location	ClcChr01: 30993522 .. 30998151 (-)
RNA-Seq Expression	Clc01G18480
Synteny	Clc01G18480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGCCGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGGTAAGTTTATGCTTTAAATTCTACATTCATTTTCGTTTCACTTCCAAAAATCTTTCACGCATTTTCATTATGCGCGGATTTTCTTTTTGCCCTTTTCTTTGATCACTTCCCCTTCTTCTTTTGGATCTGCGCCTAGGACTCTTTCTTCCTTCTTCTTACGCGCTCGAACATCAGATTCTTCCCCAAATATGGCAAAAATGTCGCTCTTCCATCTCTGCAACTCCGATTCTTGAAATCCTGCCTGTTCTGCTTCCTTCTTTTATTATTTTCTATTTCTGGTTTGAATCCTTCAATTGTTCACTGGCTAGTTCGGCTGTTTACTGTTTCTTTTCACGAAACTAGAAATTTCTCTAACTGTAACTGTTTTATCTGAAGTTTTTTCTTGTTCTCTCTCCATTTTCTCAGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGGTTTCTCTCTGCTTCTCTCTCTTTTTATATTTTATATTTTCCAGAAACAAAAACTTCAATCGGTTTCTCACGATTTCTGAGTTCTGCGTTTTTTGAACCTACTTTAGTTCCATTTACAAATGTTTCCGTGCTACTAAAAATGGAGAGAAGCTTGACAGAAATAAAGAGCAAGGCGCAGAAACCACGTGTATTTTGCTTACAACAATATTACGGAAAAAGATGAGAACAAATGAGAAAATATTAACTAATTCGATCATGGATATAAGATGAAATTCTTGTGAAGTAGTGCCTCATAAAATTTGTCATAAACAAGCAGAAAAGGATAAATGAAAACTTGCCCCGAGCCTCGCCCCCTCATCAACAACGAGGTTTATGGTAATAGTGATGACTCAACTTTTCAGTCACTCATTCTAACTTATTGCGGTTATTATAACCATGTTATGCTTGACTCTAGCTGATTTTGTTGATCTCTCTAAATTATATAGATTGAACATTGAAGTGACAAACATGGATTCATTGTCATTAATTTCTTTTGTTTAGTCATTTCTTCCATTGATTATAATACCATCTGTGTTTGACTTTCTGAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGGTTTGGCGTTTTCTTCCAGGATTTTCCTCTAGAAAATGGTCATCATTTTTTTCCCCTAACTGTTATCAAAAGATGAAGATAATAATTATTATCGCAGCCGAAAACATGGTTCATAAATTTGTCATTTTAAACGGGAAGAATTTTTTATTTGTTTTAGGAACTCAAATTACTGCTGACGTGAAAACCCTGAAAAAACAATTATTCTTACATTGATTTTTATTATATAAAATAGAAATCAGTCTAAACATTTTTCTAAACAAGCACTGTGGAAAATTATTTTTCTCCTCCTGAAGTCTACTTTATCTCTGTTAAACTAGTAGTTGTTTTAAAGAACTCAACTTATTTTGATATCATATTTAACACTTTCATTCTCTATTTCTTAAATTTTGAAAAACTACTTCGAATCTCTAGAATTTCCATTTTAGATTCCAGCAAGCATATGGTCAAGAGTAGGGTAAAAGGTGTATATTTGGCCCAAGCTTATTTTTGTAAGACAATAAAATAATGCATTCGTCTTTCGTCGTGAACGGACAAAAATCAATATTACAAAGAGATCTTAAATAGTTGATTATATTTGTATCTTGAGGACTTTGATTATTTCAACTCAATGGCGGTCACCCTTTCATTAGTTTACTGAAACATTGTTTACAACTGTCAATGATTTCAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAGACTCATCAGCTAAGGTATCTCTATTTTTACACGAGAAGTTGTGTTTTCTTTTATTTTTTCATTCACCACCATAGAAAGAGGTATAATTTGAATCTTCGATTTCAAGGAATTAAATTGAATTAGTATTAGCAATATTTGCCTGGGGCTACGCCCATTTTTTCACCCTACCCACCCTCACAACAGAAAGATGTAAAAGAAAAAGAAATTTGTCATAGAAAAAAAAGATAGGCGTAGGATAGATAGTTAGTCGGTATTTTTCAAATAGTACAAGTTTTCCGGATTAATTATGTGTTCTTTCTATTTTATAAACTAGAAAAAAATGACGTTTTATTTGATCCACTTAGATTAGTGAGCCAATTCCAATTTTGTATTTGAATACCATGTTGTAATTTGATTCTTGCACCTGAATAAATAGTGTAGTTGAGTACACCTTCAATTTGTCAAACCTTTTAAAAGATTTATAGGCTGTGAACACAGTTGAATGGGACTATTTTTATTGGTATTGGTTATCCAATATCGCTGGATACTTTTGGTTGCTAAATTTCAACCCTTTTTTTAGCATACTAATTGATTTTGTAGTTAGGTTTGGGTATTTTCATGATTAGGTTTGAACATTCCTTTGTCTGTTGGTTGTGTGGTTAGGTTCGAGTTTTTTCTTATTTATAATTAGTCATGTCTCTAACATGATTTTTAGTTTTGAGGAGGCATTCATTATAACATTTTATATAAAAGTTCAAACATTTAAATTGATGAAATTAAGAGATTAATCAAAATCAACTCACTCACCATAATGAAGGGTATACATTGATTTTTCTCCCTTGTACTTGCTAGATGCACAAGGGAAATGGTAGATATTTTGTTGTCACATTTCAGCGATTATCCAGACTACAATGGTCTAATTAGACAAAATTCTCACACTCATAGTACTACAATAAATCAGAGCACATACACAAACACGATTAAATTTGTTGATAATTTAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGTATTTTCCCTTTCTTCACCGTTTTCGTAATAAAATCCCATTTTCTTCTCATACACGATTCCGTTTTTATGTCCCAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAGAGAAAGGTTAAGTATCATCTTCAAATAAAGAAGACTATTGCCCAAAGACCCGTATTAGGAGAATCTAAGTACTTGATAATAGTATTGTATGTAATTTATACTCATAAATATATGATACAAAATGAACTTATAAATGCATTCATATGTAATCTATATTCAAACACGAACTTCTAGAAATATGACTAAAATTGCATTCATTTCTTTAAATGCGTCTATTACTCGTAAATATGTATGAATATGCTATTTAATTGCTTGTTATCAAACGAGGTGAAGCTAAATTCAAAGTTGTATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGTAAGAAGAGCCCTTTTCCACAGCACACTAATATAGGTTGTGTCCTTTGAATCCCTTTGTAACTTACAACCGCGGTGGTTTGCAGGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGGTATCCTCATTGCATGAAAATTGATTTTACTTTATTTTCTAGTAATGTTTATTTAGACTGGTCAAGTTTTGTATGATCGAGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGAGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGGTACTGTAGCTAGCAAAAAAGGTAGTATGTAAAAATAATTATACACTAAAATTCGGCCTAAGTTGAGTAATGGGAATCTAAATCTAACACCATCTCATCTTGATTTATCCAATTCATACGACTCCATTGAAATCTGAGAATCGGGTTGCATTTTTAAGAATTCAATGCACCGTTTTAACGAATCAAATTAGACTGGAAGCGAGCTATTGATGAAGCCTTGTTAACTTGGTATATGCGAGTAGTCGTAGTTTTGGGGGCAAGGACTTAACGACGGCGTTTTCCTGGTGACATCGCTCCTTTAGTTCAAACGAACAGCGGTTGTTAGTACTTTTGAATGGCGAAGTGGGAATATCATTGTTTTGCCTATTTTTGTTTAGCAATTTGATAGACGTGTTAGGGAAATAATTATAAGAGAACACCTAGTAGAAAATAAGCTATACCTATTTTTTGCACGCCACTCCATTGTCTCGTTATAATTTGCCACTAGGTCACGTGATGGACACTATGGTCTTCGTTTTATTAAAAAAATGTTAGATATTTTATTTGTTCAAAGAGGG

mRNA sequence

GCTGCCGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGGACTCTTTCTTCCTTCTTCTTACGCGCTCGAACATCAGATTCTTCCCCAAATATGGCAAAAATGTCGCTCTTCCATCTCTGCAACTCCGATTCTTGAAATCCTGCCTGTTCTGCTTCCTTCTTTTATTATTTTCTATTTCTGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGATTGAACATTGAAGTGACAAACATGGATTCATTCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGGTTTGGCGTTTTCTTCCAGGATTTTCCTCTAGAAAATGGTCATCATTTTTTTCCCCTAACTGTTATCAAAAGATGAAGATAATAATTATTATCGCAGCCGAAAACATGGTTCATAAATTTGTCATTTTAAACGGGAAGAATTTTTTATTTGTTTTAGGAACTCAAATTACTGCTGACCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAGACTCATCAGCTAAGGTATCTCTATTTTTACACGAGAATATTAGCAATATTTGCCTGGGGCTACGCCCATTTTTTCACCCTACCCACCCTCACAACAGAAAGATTACAAGTTTTCCGGATTAATTATGTGTTCTTTCTATTTTATAAACTAGAAAAAAATGACGTTTTATTTGATCCACTTAGATTAGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGTATTTTCCCTTTCTTCACCGTTTTCGTAATAAAATCCCATTTTCTTCTCATACACGATTCCGTTTTTATGTCCCAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAGAGAAAGGTTAAGTATCATCTTCAAATAAAGAAGACTATTGCCCAAAGACCCGTATTAGGAGAATCTAAGTACTTGATAATAGTATTTTGTATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGGCTGCCGTATTCCGGGTGAGGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGGTACTGTAGCTAGCAAAAAAGGTAGTATGTAAAAATAATTATACACTAAAATTCGGCCTAAGTTGAGTAATGGGAATCTAAATCTAACACCATCTCATCTTGATTTATCCAATTCATACGACTCCATTGAAATCTGAGAATCGGGTTGCATTTTTAAGAATTCAATGCACCGTTTTAACGAATCAAATTAGACTGGAAGCGAGCTATTGATGAAGCCTTGTTAACTTGGTATATGCGAGTAGTCGTAGTTTTGGGGGCAAGGACTTAACGACGGCGTTTTCCTGGTGACATCGCTCCTTTAGTTCAAACGAACAGCGGTTGTTAGTACTTTTGAATGGCGAAGTGGGAATATCATTGTTTTGCCTATTTTTGTTTAGCAATTTGATAGACGTGTTAGGGAAATAATTATAAGAGAACACCTAGTAGAAAATAAGCTATACCTATTTTTTGCACGCCACTCCATTGTCTCGTTATAATTTGCCACTAGGTCACGTGATGGACACTATGGTCTTCGTTTTATTAAAAAAATGTTAGATATTTTATTTGTTCAAAGAGGG

Coding sequence (CDS)

ATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGATTGAACATTGAAGTGACAAACATGGATTCATTCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGGTTTGGCGTTTTCTTCCAGGATTTTCCTCTAGAAAATGGTCATCATTTTTTTCCCCTAACTGTTATCAAAAGATGAAGATAATAATTATTATCGCAGCCGAAAACATGGTTCATAAATTTGTCATTTTAAACGGGAAGAATTTTTTATTTGTTTTAGGAACTCAAATTACTGCTGACCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAGACTCATCAGCTAAGGTATCTCTATTTTTACACGAGAATATTAGCAATATTTGCCTGGGGCTACGCCCATTTTTTCACCCTACCCACCCTCACAACAGAAAGATTACAAGTTTTCCGGATTAATTATGTGTTCTTTCTATTTTATAAACTAGAAAAAAATGACGTTTTATTTGATCCACTTAGATTAGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGTATTTTCCCTTTCTTCACCGTTTTCGTAATAAAATCCCATTTTCTTCTCATACACGATTCCGTTTTTATGTCCCAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAGAGAAAGGTTAAGTATCATCTTCAAATAAAGAAGACTATTGCCCAAAGACCCGTATTAGGAGAATCTAAGTACTTGATAATAGTATTTTGTATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGGCTGCCGTATTCCGGGTGA

Protein sequence

MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSRLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCYQKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRYLYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEGRRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIMKEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG

Homology

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BLAST of Clc01G18480 vs. NCBI nr
Match: KAA0036343.1 (MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protein SVP-like [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 1.0e-80
Identity = 215/413 (52.06%), Postives = 227/413 (54.96%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  E LQ            +LEK              
Sbjct: 181 M---------------RGEELQTLNIEELQ------------QLEK-------------- 240

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                +   G++               EK +F   ++ V KSHFLLI+ SVFMSQGERIM
Sbjct: 241 -----SLESGLSRVM------------EKKVFSLSSLLVRKSHFLLIYGSVFMSQGERIM 253

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAELMDENKRLKQQAEKMN
Sbjct: 301 KEITDLQRK--------------------------------SAELMDENKRLKQQAEKMN 253

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRHLGV+PEILVVEDGQSSNSVTE  VSNSNGPPQDLESSDTSLKLGLPY+G
Sbjct: 361 GVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYTG 253

[Close]

BLAST of Clc01G18480 vs. NCBI nr
Match: XP_004143442.1 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KGN49102.2 hypothetical protein Csa_003741 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 3.6e-70
Identity = 201/413 (48.67%), Postives = 208/413 (50.36%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  E LQ            +LEK+             
Sbjct: 181 M---------------RGEELQTLNIEELQ------------QLEKS------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                      E G+                   V   +GERIM
Sbjct: 241 --------------------------LESGL-----------------SRVMEKKGERIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAELMDENKRLKQQAEKMN
Sbjct: 301 KEITDLQRK--------------------------------SAELMDENKRLKQQAEKMN 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRHLGV+PEILVVEDGQSSNSVTE  VSNSNGPPQDLESSDTSLKLGLPYSG
Sbjct: 361 GVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYSG 228

[Close]

BLAST of Clc01G18480 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 8.0e-70
Identity = 200/413 (48.43%), Postives = 208/413 (50.36%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  E LQ            +LEK+             
Sbjct: 181 M---------------RGEELQTLNIEELQ------------QLEKS------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                      E G+                   V   +GERIM
Sbjct: 241 --------------------------LESGL-----------------SRVMEKKGERIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAELMDENKRLKQQAEKMN
Sbjct: 301 KEITDLQRK--------------------------------SAELMDENKRLKQQAEKMN 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRHLGV+PEILVVEDGQSSNSVTE  VSNSNGPPQDLESSDTSLKLGLPY+G
Sbjct: 361 GVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYTG 228

[Close]

BLAST of Clc01G18480 vs. NCBI nr
Match: XP_038883728.1 (MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883730.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883731.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883732.1 MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-69
Identity = 198/413 (47.94%), Postives = 209/413 (50.61%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELS+LCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSILCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGII+RHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIDRHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  E LQ            +LEK+             
Sbjct: 181 M---------------RGEELQTLNIEELQ------------QLEKS------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                      E G+                   V   +GE+IM
Sbjct: 241 --------------------------LESGL-----------------SRVMEKKGEQIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAELMDENKRLKQQAEKMN
Sbjct: 301 KEITDLQRK--------------------------------SAELMDENKRLKQQAEKMN 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRHLGV+PEILVVEDGQSSNSVT+A VSNSNGPPQDLESSDTSLKLGLPYSG
Sbjct: 361 GVRHLGVEPEILVVEDGQSSNSVTDACVSNSNGPPQDLESSDTSLKLGLPYSG 228

[Close]

BLAST of Clc01G18480 vs. NCBI nr
Match: XP_023003989.1 (MADS-box protein JOINTLESS-like [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 3.8e-64
Identity = 188/413 (45.52%), Postives = 203/413 (49.15%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFS TGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLE+PSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLERPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL T+ LQ    +  F L   +EK              
Sbjct: 181 M---------------RGEELQTLNTDELQQLEKSLEFGLSRVMEK-------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                                                 +GE+IM
Sbjct: 241 ------------------------------------------------------KGEKIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAEL++ENKRLK+QAEKM+
Sbjct: 301 KEITDLQRK--------------------------------SAELVEENKRLKKQAEKMD 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRH GV+PEI+VVEDGQSSNSVTEA V+NSNGP QDLESSDTSLKLGL YSG
Sbjct: 361 GVRHFGVEPEIVVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG 228

[Close]

BLAST of Clc01G18480 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.1e-41
Identity = 148/414 (35.75%), Postives = 183/414 (44.20%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MA+EKIQIRKIDNATARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLFE+ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MK ++ERHNL SKNL+KL+QPSLELQ                      
Sbjct: 61  S-----------MKEVLERHNLQSKNLEKLDQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENS++ R++KEIADK+H+LR 
Sbjct: 121 -------------------------------------LVENSDHARMSKEIADKSHRLR- 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
                                  +  E LQ   I                          
Sbjct: 181 ----------------------QMRGEELQGLDIE------------------------- 240

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                 E + + +A E TG+                              V  ++ ++IM
Sbjct: 241 ------ELQQLEKALE-TGL----------------------------TRVIETKSDKIM 240

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
            EI++LQ+K    +   K + Q                  Q  +L +EN+RL  Q    N
Sbjct: 301 SEISELQKKGMQLMDENKRLRQ------------------QGTQLTEENERLGMQICN-N 240

Query: 361 AVRHLGVDPE-ILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
              H G + E   V E+GQSS S+T AG  NS G P D ESSDTSL+LGLPY G
Sbjct: 361 VHAHGGAESENAAVYEEGQSSESITNAG--NSTGAPVDSESSDTSLRLGLPYGG 240

[Close]

BLAST of Clc01G18480 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.7e-35
Identity = 144/424 (33.96%), Postives = 179/424 (42.22%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MA+EKIQI+KIDN+TARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLF+YSSS
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MK I+ER +LHSKNL+KL+QPSLELQ                      
Sbjct: 61  S-----------MKQILERRDLHSKNLEKLDQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNY+RL+KEI++K+H+LR 
Sbjct: 121 -------------------------------------LVENSNYSRLSKEISEKSHRLR- 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
                                  +  E LQ   I  +  L   LE               
Sbjct: 181 ----------------------QMRGEELQGLNIEELQQLERSLE--------------- 238

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                            TG+                              V   +G++IM
Sbjct: 241 -----------------TGL----------------------------SRVIERKGDKIM 238

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKM- 360
           +EI  LQ+K                                   LM+EN++L+QQ  ++ 
Sbjct: 301 REINQLQQK--------------------------------GMHLMEENEKLRQQVMEIS 238

Query: 361 -------NAVRHLGV---DPEILV----VEDGQSSNSVTEAGVSNSNGPPQDLESSDTSL 410
                  N  R  GV   +PE        EDGQSS SVT    ++ + PPQD +SSDTSL
Sbjct: 361 NNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNP-CNSIDPPPQDDDSSDTSL 238

[Close]

BLAST of Clc01G18480 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-25
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
          MA+EKI+I+KIDN TARQVTFSKRRRG+FKKA ELSVLCDADVALIIFSATGKLFE+SSS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQP 94
          R           M+ I+ R++LH+ N+ KL  P
Sbjct: 61 R-----------MRDILGRYSLHASNINKLMDP 82

[Close]

BLAST of Clc01G18480 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-23
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MA+E+ +I++I++A ARQVTFSKRRRGLFKKA+ELSVLCDADVALI+FS+TGKL  ++SS
Sbjct: 1   MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQV 100
            +N            II+++N HS NL K EQPSL+L +
Sbjct: 61  SMN-----------EIIDKYNTHSNNLGKAEQPSLDLNL 88

[Close]

BLAST of Clc01G18480 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-22
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 3   KEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSRL 62
           +E+I IR+IDN  ARQVTFSKRRRGLFKKA+ELS+LCDA+V L++FSATGKLF+++S+  
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS- 81

Query: 63  NIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQ 99
                     M+ II+R+N HSK LQ+ E   L+LQ
Sbjct: 82  ----------MEQIIDRYNSHSKTLQRAEPSQLDLQ 106

[Close]

BLAST of Clc01G18480 vs. ExPASy TrEMBL
Match: A0A5D3CLB3 (MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003250 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 4.9e-81
Identity = 215/413 (52.06%), Postives = 227/413 (54.96%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  E LQ            +LEK              
Sbjct: 181 M---------------RGEELQTLNIEELQ------------QLEK-------------- 240

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                +   G++               EK +F   ++ V KSHFLLI+ SVFMSQGERIM
Sbjct: 241 -----SLESGLSRVM------------EKKVFSLSSLLVRKSHFLLIYGSVFMSQGERIM 253

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAELMDENKRLKQQAEKMN
Sbjct: 301 KEITDLQRK--------------------------------SAELMDENKRLKQQAEKMN 253

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRHLGV+PEILVVEDGQSSNSVTE  VSNSNGPPQDLESSDTSLKLGLPY+G
Sbjct: 361 GVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYTG 253

[Close]

BLAST of Clc01G18480 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 3.9e-70
Identity = 200/413 (48.43%), Postives = 208/413 (50.36%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  E LQ            +LEK+             
Sbjct: 181 M---------------RGEELQTLNIEELQ------------QLEKS------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                      E G+                   V   +GERIM
Sbjct: 241 --------------------------LESGL-----------------SRVMEKKGERIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAELMDENKRLKQQAEKMN
Sbjct: 301 KEITDLQRK--------------------------------SAELMDENKRLKQQAEKMN 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRHLGV+PEILVVEDGQSSNSVTE  VSNSNGPPQDLESSDTSLKLGLPY+G
Sbjct: 361 GVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYTG 228

[Close]

BLAST of Clc01G18480 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-64
Identity = 188/413 (45.52%), Postives = 203/413 (49.15%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFS TGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLE+PSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLERPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL T+ LQ    +  F L   +EK              
Sbjct: 181 M---------------RGEELQTLNTDELQQLEKSLEFGLSRVMEK-------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                                                 +GE+IM
Sbjct: 241 ------------------------------------------------------KGEKIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAEL++ENKRLK+QAEKM+
Sbjct: 301 KEITDLQRK--------------------------------SAELVEENKRLKKQAEKMD 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VRH GV+PEI+VVEDGQSSNSVTEA V+NSNGP QDLESSDTSLKLGL YSG
Sbjct: 361 GVRHFGVEPEIVVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG 228

[Close]

BLAST of Clc01G18480 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-64
Identity = 188/413 (45.52%), Postives = 202/413 (48.91%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFS TGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERHNLHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHNLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLRQ 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
           +                   L TL  + LQ    +  F L   +EK              
Sbjct: 181 M---------------RGEELQTLNIDELQQLEKSLEFGLSRVMEK-------------- 228

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                                                                 +GE+IM
Sbjct: 241 ------------------------------------------------------KGEKIM 228

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEITDLQRK                                SAEL++ENKRLK+QAEKM+
Sbjct: 301 KEITDLQRK--------------------------------SAELVEENKRLKKQAEKMD 228

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
            VR+ GV+PEILVVEDGQSSNSVTEA V+NSNGP QDLESSDTSLKLGL YSG
Sbjct: 361 GVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG 228

[Close]

BLAST of Clc01G18480 vs. ExPASy TrEMBL
Match: A0A6J1BWE4 (MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111005943 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-63
Identity = 188/414 (45.41%), Postives = 201/414 (48.55%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MKGIIERH+LHSKNLQKLEQPSLELQ                      
Sbjct: 61  S-----------MKGIIERHHLHSKNLQKLEQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENSNYTRLNKEIA+KTHQLR 
Sbjct: 121 -------------------------------------LVENSNYTRLNKEIAEKTHQLR- 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
                                  +  E LQ   I  +  L   LE               
Sbjct: 181 ----------------------QMRGEELQALNIEELQQLEKSLES-------------- 229

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                    G++   E                                      +GERIM
Sbjct: 241 ---------GLSRVME-------------------------------------KKGERIM 229

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
           KEI DLQRK                                SAELM+ENKRLKQ A+KMN
Sbjct: 301 KEINDLQRK--------------------------------SAELMEENKRLKQHADKMN 229

Query: 361 AVRHLGVDPEILVVEDGQSSNSVTEAGVSNSN-GPPQDLESSDTSLKLGLPYSG 414
            V+H+ V+PE L VEDGQSSNS+TEA VSNSN GPPQDLESSDTSLKLGLPYSG
Sbjct: 361 GVKHISVEPENLAVEDGQSSNSITEACVSNSNGGPPQDLESSDTSLKLGLPYSG 229

[Close]

BLAST of Clc01G18480 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 169.5 bits (428), Expect = 5.8e-42
Identity = 148/414 (35.75%), Postives = 183/414 (44.20%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MA+EKIQIRKIDNATARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLFE+ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MK ++ERHNL SKNL+KL+QPSLELQ                      
Sbjct: 61  S-----------MKEVLERHNLQSKNLEKLDQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENS++ R++KEIADK+H+LR 
Sbjct: 121 -------------------------------------LVENSDHARMSKEIADKSHRLR- 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
                                  +  E LQ   I                          
Sbjct: 181 ----------------------QMRGEELQGLDIE------------------------- 240

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                 E + + +A E TG+                              V  ++ ++IM
Sbjct: 241 ------ELQQLEKALE-TGL----------------------------TRVIETKSDKIM 240

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
            EI++LQ+K    +   K + Q                  Q  +L +EN+RL  Q    N
Sbjct: 301 SEISELQKKGMQLMDENKRLRQ------------------QGTQLTEENERLGMQICN-N 240

Query: 361 AVRHLGVDPE-ILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
              H G + E   V E+GQSS S+T AG  NS G P D ESSDTSL+LGLPY G
Sbjct: 361 VHAHGGAESENAAVYEEGQSSESITNAG--NSTGAPVDSESSDTSLRLGLPYGG 240

[Close]

BLAST of Clc01G18480 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 162.9 bits (411), Expect = 5.4e-40
Identity = 145/414 (35.02%), Postives = 180/414 (43.48%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           MA+EKIQIRKIDNATARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLF+    
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFD---- 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWRFLPGFSSRKWSSFFSPNCY 120
                       MK ++ERHNL SKNL+KL+QPSLELQ                      
Sbjct: 61  ------------MKEVLERHNLQSKNLEKLDQPSLELQ---------------------- 120

Query: 121 QKMKIIIIIAAENMVHKFVILNGKNFLFVLGTQITADLVENSNYTRLNKEIADKTHQLRY 180
                                                LVENS++ R++KEIADK+H+LR 
Sbjct: 121 -------------------------------------LVENSDHARMSKEIADKSHRLR- 180

Query: 181 LYFYTRILAIFAWGYAHFFTLPTLTTERLQVFRINYVFFLFYKLEKNDVLFDPLRLADEG 240
                                  +  E LQ   I                          
Sbjct: 181 ----------------------QMRGEELQGLDIE------------------------- 235

Query: 241 RRTPNTEYRGIAEAREVTGVWIESCDGEKGIFPFFTVFVIKSHFLLIHDSVFMSQGERIM 300
                 E + + +A E TG+                              V  ++ ++IM
Sbjct: 241 ------ELQQLEKALE-TGL----------------------------TRVIETKSDKIM 235

Query: 301 KEITDLQRKVKYHLQIKKTIAQRPVLGESKYLIIVFCMCMQSAELMDENKRLKQQAEKMN 360
            EI++LQ+K    +   K + Q                  Q  +L +EN+RL  Q    N
Sbjct: 301 SEISELQKKGMQLMDENKRLRQ------------------QGTQLTEENERLGMQICN-N 235

Query: 361 AVRHLGVDPE-ILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGLPYSG 414
              H G + E   V E+GQSS S+T AG  NS G P D ESSDTSL+LGLPY G
Sbjct: 361 VHAHGGAESENAAVYEEGQSSESITNAG--NSTGAPVDSESSDTSLRLGLPYGG 235

[Close]

BLAST of Clc01G18480 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-26
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
          MA+EKI+I+KIDN TARQVTFSKRRRG+FKKA ELSVLCDADVALIIFSATGKLFE+SSS
Sbjct: 1  MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61 RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQP 94
          R           M+ I+ R++LH+ N+ KL  P
Sbjct: 61 R-----------MRDILGRYSLHASNINKLMDP 82

[Close]

BLAST of Clc01G18480 vs. TAIR 10
Match: AT2G14210.1 (AGAMOUS-like 44 )

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-20
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           M + KI IR+IDN+T+RQVTFSKRR GL KKAKELS+LCDA+V +IIFS+TGKL++Y+S 
Sbjct: 1   MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVIIFSSTGKLYDYAS- 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWR 102
                    +S MK IIER+N   +   +L   + E++ W+
Sbjct: 61  ---------NSSMKTIIERYNRVKEEQHQLLNHASEIKFWQ 91

[Close]

BLAST of Clc01G18480 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 97.4 bits (241), Expect = 2.8e-20
Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60
           M + KI I++ID++T+RQVTFSKRR+GL KKAKEL++LCDA+V LIIFS+TGKL++++SS
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61  RLNIEVTNMDSFMKGIIERHNLHSKNLQKLEQPSLELQVWR 102
                       MK +I+R+N      Q+L  P+ E++ W+
Sbjct: 61  S-----------MKSVIDRYNKSKIEQQQLLNPASEVKFWQ 90

The following BLAST results are available for this feature:

BLAST of Clc01G18480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036343.1	1.0e-80	52.06	MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protei...	[more]
XP_004143442.1	3.6e-70	48.67	MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box prote...	[more]
XP_008440538.1	8.0e-70	48.43	PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: M...	[more]
XP_038883728.1	2.3e-69	47.94	MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein S...	[more]
XP_023003989.1	3.8e-64	45.52	MADS-box protein JOINTLESS-like [Cucurbita maxima]	[more]

BLAST of Clc01G18480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVC1	8.1e-41	35.75	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
Q9FUY6	8.7e-35	33.96	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
O82794	3.7e-25	67.74	MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1	[more]
Q9XJ66	1.5e-23	59.60	MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q5K4R0	2.2e-22	58.33	MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of Clc01G18480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLB3	4.9e-81	52.06	MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B1C2	3.9e-70	48.43	MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1	[more]
A0A6J1KUX0	1.9e-64	45.52	MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4...	[more]
A0A6J1HEK8	9.2e-64	45.52	MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE...	[more]
A0A6J1BWE4	1.2e-63	45.41	MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111005943 P...	[more]

BLAST of Clc01G18480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22540.1	5.8e-42	35.75	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.2	5.4e-40	35.02	K-box region and MADS-box transcription factor family protein	[more]
AT4G24540.1	2.6e-26	67.74	AGAMOUS-like 24	[more]
AT2G14210.1	1.6e-20	52.48	AGAMOUS-like 44	[more]
AT4G37940.1	2.8e-20	49.50	AGAMOUS-like 21	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 342..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 377..413
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..98 coord: 291..410
None	No IPR available	PANTHER	PTHR48019:SF101	MADS-BOX PROTEIN SVP ISOFORM X1	coord: 1..98 coord: 291..410
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 77.22 coord: 3..23 score: 52.46 coord: 38..59 score: 62.84
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 3.0E-38 score: 143.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 7.8E-25 score: 86.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 29.688368
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..89 e-value: 9.0E-25 score: 88.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..65
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..88 e-value: 3.78528E-36 score: 125.357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G18480.2	Clc01G18480.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding