
Clc01G17440 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGGGAATTTTGTGGTCAAAAGTAACGGCCTTCCGAAGCAGACACAAGAGATCTGGCAATGGCTCAGCCTCTGACCGGATAAAACTTGTTTGTCCACGTGCTCATAATGCGACTCAAAAGCGGGAAACTTCGAAACGGAAAAGGGTGAGTAATAGTTACACAAACAGCCGCGCAACTCAAATCCTCGGCCGCAGCCCCCACTCTTGAAGATTAGACGTAGCCTAGCCGCCATGGATGATGTTAGGGCAACCTCTGCTTGGGTTGCTAGCCGCTCCTCCCACGTCCTCGTCGACTCTTCAGGTTCAGTTTTTCGCTTTCGGGGTTTTTTTTTTTTCCTCTTCGATAATGGCGATGGTTAATGTGGGTCGTTTTCTTTTGGTTTTCATATTGTAGGGATTGAGAAAGTGGTGGAGACTATCGAGTCGATTCCTAAAGTTCATTGGGATTTTGAAGGGATTCACTATTTTGATAATGGCCCATTAACCGTCCAGTACTTGTTCGTCTTGGACGCCTTGAATTTCTGTTTCTGGCCTGGTAAAATTTATCTCCCCTTTTTCTTTTTCTGGCCTGGTTTGTTTTCCCCCAATCTTTATGGTTCGTTATATTATCTCCCAACTGTGTCACTGCCACTCCATTTTTGTTTCAGATATGCTATTTTCTCCTTGCAATTGTTTCTTCTTGGTCGATTCTCCATTCTCTGCGTTTAGTTCTTTATAATTTTTACTGAATACCAACTTGTGCCATTGTTAATTTCACAATTTTTTTCTTTACATTTGTTCATTTGGTATAGAACGCCTCTGCATGTTGACTGTGGTGATTGCGAGAGGCTCGACATCTTAAGATTAAGAAATCTCTGAACTAAGCCTTGTGTTTTACCATACTCAAGATCATACATTATTCACTCCAGATATTTCTTTATAGCATTGGAAACTCGAAGTCAATGAAAAACGACTGGTTAGCACAATTAGGAAGCTAGAAAAGCAGAGAAACGATTTTAGCTTTTGCGCTTCAATAAGATTACACCCTGGAATGTGGACAAAGAACCTAACTGGACGATCATATCTCACAAGTTTTCTGATTGCGTACTATAGATTAGGTGTAACTGTGTATGTCACACTTTCAAAACTAGTAATAAGGTCAAAGGTATGAGAGAAAGGATTTAGATTTAAAAGATGAAAATGGAAGTTCAATTTGCGAGTCAGAGTGTCCCTCTCAATTTGACATTTGTAGAAGCCATACAAGTAGTTTATATCATTATGCATTGTAGGGAGAGACTGAAAGGGACAATGTTACTTCTTTTTCTCGCATTATTCCATTGGTAATTGTTCCTGAATTTCTGATGTGTATGTTATGTTTATGTTTATGTTTATGTTTACATGTAATGTTATAATCTAAAGAGGCAGTTTAATATATATTATTGTTCTCAAAGATATATTTCGCTTCACTTAAAAATTATTTTCTTCCTCTCGGCTAAAGATAAGGACTTGAGCTATGATCACTTGGCCTCGGGACTGAAGGCTGCTCTTCAAAATGACAAGTCAGCATTTGATGCTGACCGCCTGCAAAAATACACTGGTAAGTGACAATTGAAAAATGATAACATTAACATCTTAACCTGATGGTCTTATTTCGTTAATCACTTTATGAATGCGATCAGGCCCTCAATTGCGTGAACTGTTAAATTGGCCTAGACCACTTCCTTTGGAGGATGAACGGGTTCGCTTACTGCACGAGGTGAAATAACCTTCCCATCAGTAGATTCTAGTATATGTTTACCCTTTTGTTATGGACGGTATTCTTCTGACTTGCAATTACTTATCCTTGTATGGAACTATGTTTGTGAGATCATTCTATCTCATGTCTTAGGTTGGATGCGAACTAGAGAGAAGCTTCAAGGGTAAAGCTTCTAATATAGTGGAATCCTGTGGAAAATCAGCCGTGAAACTTGTTGCTGTTATCACGCAACACTTTCCTGGTATCAACTTTTATATACTTCTATTAAACATGTTATTAGTTAGACTTAGGTGCTAAATTGCTGATGTTAAGGAGAATATATTGAGATGGTTGTTTGATATGTTCACCATTACCTTACATTAGGCTTTCGAGACCACTCTCTCTACAAAGGCCACCAGGTATTCCTGTACAAACGAGCTCAAATATTTGCAGCTGACCTTTGGGGTGCATTCCGTGGCCAAGGATATGGAGAGTTCAATGACATCGGTTCAATCACCATTATGGCAGACTACATCGTTCCTGCCGTACTTAGACAGCTTGGGGTGCTAAAATATAGTTCTACACTTGCTAGCATCATCGATGCCAACAGTGAAATCGGTCCAGGCAGCGAGGAGGAAGTAGAACTCCGGGCTTGCTCAATATATGCAGTTGAGAAAATGCGAGAATTGATCAGTATGAAATCAGGAAAACAGGTATTTCCTTATTAAATTATCTTTAGCTTAGGATAGATCAACTGCACTATCCTAGCATCCGATTTTTCATTCAAAAGAACATTGAAAGTATAGTTTACTTCCTGGCAGCAAACAAAAACCTGAGAAGTAACAAATATCCCATGATCCCATCTTTATCCCTCGATCTGTTAATGCTTTTGGTTTTTCGAAATATGGAGTGAAAAGATTTGGGTTTTTGCAGGTTCTAAGCGTGGAGTTAGATCTTTGGCTATGGTCCTTTGGAATCCAGTGCCCATCTCTGCCACACCATCGTACTCTTTCAATTTACTATTGATTCCAATCCAACACTTGATCTGATAGCCTTCTGTTATGCACCTGCCAGTTAGAGAATGGCAAAATTTTGGTTGTCCGAAGAAGCTCGGGGTAATTTATCGAGGCATCTCTTTTAGGAACGTTGAAGTTTAGTAGAAAAGGACCCAATATAAAAGTTTAGATTTTGTACATCTTTTACTTTAGTACTGTTACAAACAGCCTAACGATGATTAATTTGTTATAAACAGTAATGGGTTATTCCCTTTACAAAATTTAGACCTTCACTTCAAACAAAGGAACAAAAAGAGAAAAGAGAAAGAAGAAACTGAAGGGATTCAAAGGGTCTATCCATGTTTTATGTTGTGGCGCTGGGGTTCTTGGTGATGGGCAAATTCCCATCATAGCTACATTTCAAGACGTCTGGTCTTCTAAGTAGTCGAGGTCCAATTGGAACTTTGCTCTGTTTTGGGCGAATGTCCTGCTCATTCACACACACACACATATATATCTTAATGATATCAGACAGATTTACAGATAGAAATTAGTATATTTGATTTGAGATATTCCTGATAATTTCTCAATCTAAAACACTTAATGTACCAATTTATATGATAGAAAAACTTGTGAGTTGACTTCAGATATGGTTAATACTATTATGAAATTTCTTTAGGAGTCTACACATTAGCCTTTTCATGCCC TGGGGAATTTTGTGGTCAAAAGTAACGGCCTTCCGAAGCAGACACAAGAGATCTGGCAATGGCTCAGCCTCTGACCGGATAAAACTTGTTTGTCCACGTGCTCATAATGCGACTCAAAAGCGGGAAACTTCGAAACGGAAAAGGGTGAGTAATAGTTACACAAACAGCCGCGCAACTCAAATCCTCGGCCGCAGCCCCCACTCTTGAAGATTAGACGTAGCCTAGCCGCCATGGATGATGTTAGGGCAACCTCTGCTTGGGTTGCTAGCCGCTCCTCCCACGTCCTCGTCGACTCTTCAGGGATTGAGAAAGTGGTGGAGACTATCGAGTCGATTCCTAAAGTTCATTGGGATTTTGAAGGGATTCACTATTTTGATAATGGCCCATTAACCGTCCAGTACTTGTTCGTCTTGGACGCCTTGAATTTCTGTTTCTGGCCTGAACGCCTCTGCATGTTGACTGTGCATTGGAAACTCGAAGTCAATGAAAAACGACTGGTTAGCACAATTAGGAAGCTAGAAAAGCAGAGAAACGATTTTAGCTTTTGCGCTTCAATAAGATTACACCCTGGAATGTGGACAAAGAACCTAACTGGACGATCATATCTCACAAGTTTTCTGATTGCGTACTATAGATTAGGTGTAACTGTGTATGTCACACTTTCAAAACTAGTAATAAGGTCAAAGGGAGAGACTGAAAGGGACAATGTTACTTCTTTTTCTCGCATTATTCCATTGGTAATTGTTCCTGAATTTCTGATGTATAAGGACTTGAGCTATGATCACTTGGCCTCGGGACTGAAGGCTGCTCTTCAAAATGACAAGTCAGCATTTGATGCTGACCGCCTGCAAAAATACACTGGCCCTCAATTGCGTGAACTGTTAAATTGGCCTAGACCACTTCCTTTGGAGGATGAACGGGTTCGCTTACTGCACGAGGTTGGATGCGAACTAGAGAGAAGCTTCAAGGGTAAAGCTTCTAATATAGTGGAATCCTGTGGAAAATCAGCCGTGAAACTTGTTGCTGTTATCACGCAACACTTTCCTGGCTTTCGAGACCACTCTCTCTACAAAGGCCACCAGGTATTCCTGTACAAACGAGCTCAAATATTTGCAGCTGACCTTTGGGGTGCATTCCGTGGCCAAGGATATGGAGAGTTCAATGACATCGGTTCAATCACCATTATGGCAGACTACATCGTTCCTGCCGTACTTAGACAGCTTGGGGTGCTAAAATATAGTTCTACACTTGCTAGCATCATCGATGCCAACAGTGAAATCGGTCCAGGCAGCGAGGAGGAAGTAGAACTCCGGGCTTGCTCAATATATGCAGTTGAGAAAATGCGAGAATTGATCAGTATGAAATCAGGAAAACAGGTTCTAAGCGTGGAGTTAGATCTTTGGCTATGGTCCTTTGGAATCCAGTGCCCATCTCTGCCACACCATCGTACTCTTTCAATTTACTATTGATTCCAATCCAACACTTGATCTGATAGCCTTCTGTTATGCACCTGCCAGTTAGAGAATGGCAAAATTTTGGTTGTCCGAAGAAGCTCGGGGTAATTTATCGAGGCATCTCTTTTAGGAACGTTGAAGTTTAGTAGAAAAGGACCCAATATAAAAGTTTAGATTTTGTACATCTTTTACTTTAGTACTGTTACAAACAGCCTAACGATGATTAATTTGTTATAAACAGTAATGGGTTATTCCCTTTACAAAATTTAGACCTTCACTTCAAACAAAGGAACAAAAAGAGAAAAGAGAAAGAAGAAACTGAAGGGATTCAAAGGGTCTATCCATGTTTTATGTTGTGGCGCTGGGGTTCTTGGTGATGGGCAAATTCCCATCATAGCTACATTTCAAGACGTCTGGTCTTCTAAGTAGTCGAGGTCCAATTGGAACTTTGCTCTGTTTTGGGCGAATGTCCTGCTCATTCACACACACACACATATATATCTTAATGATATCAGACAGATTTACAGATAGAAATTAGTATATTTGATTTGAGATATTCCTGATAATTTCTCAATCTAAAACACTTAATGTACCAATTTATATGATAGAAAAACTTGTGAGTTGACTTCAGATATGGTTAATACTATTATGAAATTTCTTTAGGAGTCTACACATTAGCCTTTTCATGCCC ATGGATGATGTTAGGGCAACCTCTGCTTGGGTTGCTAGCCGCTCCTCCCACGTCCTCGTCGACTCTTCAGGGATTGAGAAAGTGGTGGAGACTATCGAGTCGATTCCTAAAGTTCATTGGGATTTTGAAGGGATTCACTATTTTGATAATGGCCCATTAACCGTCCAGTACTTGTTCGTCTTGGACGCCTTGAATTTCTGTTTCTGGCCTGAACGCCTCTGCATGTTGACTGTGCATTGGAAACTCGAAGTCAATGAAAAACGACTGGTTAGCACAATTAGGAAGCTAGAAAAGCAGAGAAACGATTTTAGCTTTTGCGCTTCAATAAGATTACACCCTGGAATGTGGACAAAGAACCTAACTGGACGATCATATCTCACAAGTTTTCTGATTGCGTACTATAGATTAGGTGTAACTGTGTATGTCACACTTTCAAAACTAGTAATAAGGTCAAAGGGAGAGACTGAAAGGGACAATGTTACTTCTTTTTCTCGCATTATTCCATTGGTAATTGTTCCTGAATTTCTGATGTATAAGGACTTGAGCTATGATCACTTGGCCTCGGGACTGAAGGCTGCTCTTCAAAATGACAAGTCAGCATTTGATGCTGACCGCCTGCAAAAATACACTGGCCCTCAATTGCGTGAACTGTTAAATTGGCCTAGACCACTTCCTTTGGAGGATGAACGGGTTCGCTTACTGCACGAGGTTGGATGCGAACTAGAGAGAAGCTTCAAGGGTAAAGCTTCTAATATAGTGGAATCCTGTGGAAAATCAGCCGTGAAACTTGTTGCTGTTATCACGCAACACTTTCCTGGCTTTCGAGACCACTCTCTCTACAAAGGCCACCAGGTATTCCTGTACAAACGAGCTCAAATATTTGCAGCTGACCTTTGGGGTGCATTCCGTGGCCAAGGATATGGAGAGTTCAATGACATCGGTTCAATCACCATTATGGCAGACTACATCGTTCCTGCCGTACTTAGACAGCTTGGGGTGCTAAAATATAGTTCTACACTTGCTAGCATCATCGATGCCAACAGTGAAATCGGTCCAGGCAGCGAGGAGGAAGTAGAACTCCGGGCTTGCTCAATATATGCAGTTGAGAAAATGCGAGAATTGATCAGTATGAAATCAGGAAAACAGGTTCTAAGCGTGGAGTTAGATCTTTGGCTATGGTCCTTTGGAATCCAGTGCCCATCTCTGCCACACCATCGTACTCTTTCAATTTACTATTGA MDDVRATSAWVASRSSHVLVDSSGIEKVVETIESIPKVHWDFEGIHYFDNGPLTVQYLFVLDALNFCFWPERLCMLTVHWKLEVNEKRLVSTIRKLEKQRNDFSFCASIRLHPGMWTKNLTGRSYLTSFLIAYYRLGVTVYVTLSKLVIRSKGETERDNVTSFSRIIPLVIVPEFLMYKDLSYDHLASGLKAALQNDKSAFDADRLQKYTGPQLRELLNWPRPLPLEDERVRLLHEVGCELERSFKGKASNIVESCGKSAVKLVAVITQHFPGFRDHSLYKGHQVFLYKRAQIFAADLWGAFRGQGYGEFNDIGSITIMADYIVPAVLRQLGVLKYSSTLASIIDANSEIGPGSEEEVELRACSIYAVEKMRELISMKSGKQVLSVELDLWLWSFGIQCPSLPHHRTLSIYY Homology
BLAST of Clc01G17440 vs. NCBI nr
Match: XP_008440365.1 (PREDICTED: UPF0553 protein-like [Cucumis melo]) HSP 1 Score: 560.1 bits (1442), Expect = 1.6e-155 Identity = 295/412 (71.60%), Postives = 302/412 (73.30%), Query Frame = 0
BLAST of Clc01G17440 vs. NCBI nr
Match: XP_011657891.1 (queuosine salvage protein [Cucumis sativus] >KGN48599.1 hypothetical protein Csa_004208 [Cucumis sativus]) HSP 1 Score: 556.6 bits (1433), Expect = 1.8e-154 Identity = 295/412 (71.60%), Postives = 300/412 (72.82%), Query Frame = 0
BLAST of Clc01G17440 vs. NCBI nr
Match: XP_038883825.1 (queuosine salvage protein-like [Benincasa hispida]) HSP 1 Score: 553.1 bits (1424), Expect = 2.0e-153 Identity = 292/412 (70.87%), Postives = 299/412 (72.57%), Query Frame = 0
BLAST of Clc01G17440 vs. NCBI nr
Match: XP_022132878.1 (UPF0553 protein-like [Momordica charantia]) HSP 1 Score: 549.7 bits (1415), Expect = 2.2e-152 Identity = 291/412 (70.63%), Postives = 298/412 (72.33%), Query Frame = 0
BLAST of Clc01G17440 vs. NCBI nr
Match: TYK12822.1 (UPF0553 protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 546.2 bits (1406), Expect = 2.4e-151 Identity = 288/405 (71.11%), Postives = 295/405 (72.84%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy Swiss-Prot
Match: Q54II8 (Queuosine salvage protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0288723 PE=3 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 1.2e-49 Identity = 134/425 (31.53%), Postives = 188/425 (44.24%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy Swiss-Prot
Match: Q1JP73 (Queuosine salvage protein OS=Bos taurus OX=9913 PE=2 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 9.6e-34 Identity = 89/243 (36.63%), Postives = 129/243 (53.09%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy Swiss-Prot
Match: Q5T6V5 (Queuosine salvage protein OS=Homo sapiens OX=9606 GN=C9orf64 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.8e-33 Identity = 90/243 (37.04%), Postives = 124/243 (51.03%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy Swiss-Prot
Match: Q9HDZ9 (Queuosine salvage protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC589.05c PE=3 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.8e-32 Identity = 77/202 (38.12%), Postives = 113/202 (55.94%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy Swiss-Prot
Match: A7SNN9 (Queuosine salvage protein OS=Nematostella vectensis OX=45351 GN=v1g230591 PE=3 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 1.0e-27 Identity = 114/432 (26.39%), Postives = 178/432 (41.20%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy TrEMBL
Match: A0A1S3B1Q0 (Queuosine salvage protein OS=Cucumis melo OX=3656 GN=LOC103484840 PE=3 SV=1) HSP 1 Score: 560.1 bits (1442), Expect = 7.8e-156 Identity = 295/412 (71.60%), Postives = 302/412 (73.30%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy TrEMBL
Match: A0A0A0KIH4 (Queuosine salvage protein OS=Cucumis sativus OX=3659 GN=Csa_6G495040 PE=3 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 8.7e-155 Identity = 295/412 (71.60%), Postives = 300/412 (72.82%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy TrEMBL
Match: A0A6J1BXI6 (Queuosine salvage protein OS=Momordica charantia OX=3673 GN=LOC111005615 PE=3 SV=1) HSP 1 Score: 549.7 bits (1415), Expect = 1.1e-152 Identity = 291/412 (70.63%), Postives = 298/412 (72.33%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy TrEMBL
Match: A0A5D3CNA0 (Queuosine salvage protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004140 PE=3 SV=1) HSP 1 Score: 546.2 bits (1406), Expect = 1.2e-151 Identity = 288/405 (71.11%), Postives = 295/405 (72.84%), Query Frame = 0
BLAST of Clc01G17440 vs. ExPASy TrEMBL
Match: A0A5A7T4C7 (Queuosine salvage protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G002330 PE=3 SV=1) HSP 1 Score: 545.0 bits (1403), Expect = 2.6e-151 Identity = 287/405 (70.86%), Postives = 295/405 (72.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|