Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCATTGGTCTGTGACCTGTATGCGGGTGATTATATCAATATTCACATGACAGCTCTAGCTATAAGATGAACAAAGCGCATTGTATTATTTGCGCCTTGCTTCCTTGTTCCGGCCCCTTCCAAGCGAAGGCGATCTCTTCTTCGAATTAGGGTTTCAGATTATTGAGGTTCTCTCGGGATTCCTCGTAAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTAAAAGCTGCTAAGGGCGAGTTTTCTCTCTCTAATTCTTCGCCTCTATTTATCGACAATTCTTTCTTTTTTGTCGTACTTTTGTTGATTTCTGAGTGGATTTCTAACTAA mRNA sequence ATGTCATTGGTCTGTGACCTGTATGCGGATGAACAAAGCGCATTGTATTATTTGCGCCTTGCTTCCTTGTTCCGGCCCCTTCCAAGCGAAGGCGATCTCTTCTTCGAATTAGGGTTTCAGATTATTGAGGTTCTCTCGGGATTCCTCGTAAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTAAAAGCTGCTAAGGGCGAGTTTTCTCTCTCTAATTCTTCGCCTCTATTTATCGACAATTCTTTCTTTTTTGTCGTACTTTTGTTGATTTCTGAGTGGATTTCTAACTAA Coding sequence (CDS) ATGTCATTGGTCTGTGACCTGTATGCGGATGAACAAAGCGCATTGTATTATTTGCGCCTTGCTTCCTTGTTCCGGCCCCTTCCAAGCGAAGGCGATCTCTTCTTCGAATTAGGGTTTCAGATTATTGAGGTTCTCTCGGGATTCCTCGTAAAAATGGGAGGGGGGAACGGGCAGAAAGCGAAGATGGCTCGCGAGAAGAACATGGAGAAGCTAAAAGCTGCTAAGGGCGAGTTTTCTCTCTCTAATTCTTCGCCTCTATTTATCGACAATTCTTTCTTTTTTGTCGTACTTTTGTTGATTTCTGAGTGGATTTCTAACTAA Protein sequence MSLVCDLYADEQSALYYLRLASLFRPLPSEGDLFFELGFQIIEVLSGFLVKMGGGNGQKAKMAREKNMEKLKAAKGEFSLSNSSPLFIDNSFFFVVLLLISEWISN
Homology
BLAST of Clc01G17360 vs. NCBI nr
Match: KAE8647516.1 (hypothetical protein Csa_003813 [Cucumis sativus]) HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18 Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 0
Query: 10 DEQSALYYLRLASLFRPLPSEGDLFFELGFQIIEVLSGFLVKMGGGNGQKAKMAREKNME 69
DEQ+ALY+LRLAS SEGDLFF LGFQI +VLSGFLVKMGGGNGQK+KMAREKNME
Sbjct: 50 DEQTALYHLRLAS---ERASEGDLFFGLGFQISKVLSGFLVKMGGGNGQKSKMAREKNME 109
Query: 70 KLKAA-KGEF 79
KLKAA KGEF
Sbjct: 110 KLKAASKGEF 116
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8647516.1 | 2.4e-18 | 81.43 | hypothetical protein Csa_003813 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR026939 | ZNF706/At2g23090 superfamily | GENE3D | 4.10.1050.10 | | coord: 48..85
e-value: 4.6E-6
score: 28.9 |
| None | No IPR available | SUPERFAMILY | 118359 | Expressed protein At2g23090/F21P24.15 | coord: 50..76 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
