Clc01G16190 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G16190
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSHR-BD domain-containing protein
LocationClcChr01: 29022370 .. 29023605 (-)
RNA-Seq ExpressionClc01G16190
SyntenyClc01G16190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGTCCAACGAGAGTTTCGAGTGATCAGTGGCAATGGCGAACGAACGGCGATAATAGATCGGCGGCGGCAACAGCAATGTAGGGTTTTTTTAGGTTCTCAGAAAATAAGGGTTTTAAGCTTTCAAAACATTTGCTGCTCTGATACCATATTGAAAAATATTATTTTCTCTCTTATTTCTCATGGAAAAGGGGTTTCTTAAATAGAAGAAATACCCCATTACAAATGAGAAAAAATAAAAAATAAAAAATACAGTAGTAAATATAACACATAAAAAAAAAAAAAATAAAAAAAAAAATATAACACAATAAATACAGAGGAGATATCAACAAAAAAGGAAACAATCGATGTTTTTTTTTCTTTTTGAAGGAGTACAACAACTCATGCAGGGTGAGGATTCAAACGTCTAACCTTTTGGTCGAAGATATAATCTCTTAACTAGTGTTAAGTCGTGCTTAGGTGGCAGTCATACAAAGTAGTGAATTATGTTTGTGATGACAATATCATTACATATTACTTGCTAAATATGCTCATGTTTTTTAATTTCGTGTAATTATTGACCTCTACAAAAGTTTTAATGAAGTATAATTTTACCAAAAACCGAAAAAAAAAAAAAAAAGAAAGGAAGACCATATGTGACACGTGATAGTAAACTAGTATTACATCACACTGACGTCATTGCAGTGTAATTTTTGGGGAGAAGCATAAATATAACTTCTTTTATCTTAAGGTTGTGGATTTTTTTAGGTAATATGGTTTATTAATTCCAGAAAGTGGATATCAGGATTCTGCAAATATTGTATAGTTGCATAATGGTCTCTTTTTTGGATGGCTGCAGTTATATATTGAAGGCTACCTGCAAGCTATGCTGGATACAATGTACAAACAAGAATATCTTAGAGTTAGAGTCATTGACAATCAGGTATGTCTTAGTGGTATACAAGGAACTGTCAAGAATTTCTTTCTTTATATATTTGATGACTAAGGAAACATTCACTAGAAAATTTCTGCCCACGACCATAAGTTCTTCTGATGCACAATCTTCATTGTACAAATGGCCTAGATACTATAATACGAAATCATGCTAAACCAAAATATTTTATGATCTGATTACCAACTTGATTTTTCAGACTGTACATCTTTTGATTTGACAGACTAAGTTCAGAACTCAAATAATATCATGTATGCATTCAGGTTATCCTAAAAAATCTTCCCCAAACACTCGTCTGGTAA

mRNA sequence

atgcgacgtccaacgagagtttcgagtgatcagtggcaatggcgaacgaacggcgataatagatcggcggcggcaacagcaattgtaatttttggggagaagcataaatataacttcttttatcttaagttatatattgaaggctacctgcaagctatgctggatacaatgtacaaacaagaatatcttagagttagagtcattgacaatcaggttatcctaaaaaatcttccccaaacactcgtctggtaa

Coding sequence (CDS)

ATGCGACGTCCAACGAGAGTTTCGAGTGATCAGTGGCAATGGCGAACGAACGGCGATAATAGATCGGCGGCGGCAACAGCAATTGTAATTTTTGGGGAGAAGCATAAATATAACTTCTTTTATCTTAAGTTATATATTGAAGGCTACCTGCAAGCTATGCTGGATACAATGTACAAACAAGAATATCTTAGAGTTAGAGTCATTGACAATCAGGTTATCCTAAAAAATCTTCCCCAAACACTCGTCTGGTAA

Protein sequence

MRRPTRVSSDQWQWRTNGDNRSAAATAIVIFGEKHKYNFFYLKLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLPQTLVW
Homology
[Close]
BLAST of Clc01G16190 vs. NCBI nr
Match: XP_022132800.1 (uncharacterized protein LOC111005570 isoform X2 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Sbjct: 2859 ELYVEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 2894

[Close]
BLAST of Clc01G16190 vs. NCBI nr
Match: XP_022132801.1 (uncharacterized protein LOC111005570 isoform X3 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Sbjct: 2672 ELYVEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 2707

[Close]
BLAST of Clc01G16190 vs. NCBI nr
Match: XP_022132799.1 (uncharacterized protein LOC111005570 isoform X1 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Sbjct: 2993 ELYVEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 3028

[Close]
BLAST of Clc01G16190 vs. NCBI nr
Match: XP_010316168.1 (uncharacterized protein LOC101257436 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Sbjct: 3001 ELYIEGYLQAMLDTLYKQEYLRVRVIDNQVILKNLP 3036

[Close]
BLAST of Clc01G16190 vs. NCBI nr
Match: XP_006338248.1 (PREDICTED: uncharacterized protein LOC102601421 isoform X1 [Solanum tuberosum])

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Sbjct: 3002 ELYIEGYLQAMLDTLYKQEYLRVRVIDNQVILKNLP 3037

[Close]
BLAST of Clc01G16190 vs. ExPASy TrEMBL
Match: A0A6J1BTB2 (uncharacterized protein LOC111005570 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111005570 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Sbjct: 2672 ELYVEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 2707

[Close]
BLAST of Clc01G16190 vs. ExPASy TrEMBL
Match: A0A6J1BU46 (uncharacterized protein LOC111005570 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005570 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Sbjct: 2993 ELYVEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 3028

[Close]
BLAST of Clc01G16190 vs. ExPASy TrEMBL
Match: A0A6J1BTH4 (uncharacterized protein LOC111005570 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005570 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LY+EGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP
Sbjct: 2859 ELYVEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 2894

[Close]
BLAST of Clc01G16190 vs. ExPASy TrEMBL
Match: A0A2G2XIL4 (SHR-BD domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_05816 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Sbjct: 2909 ELYIEGYLQAMLDTLYKQEYLRVRVIDNQVILKNLP 2944

[Close]
BLAST of Clc01G16190 vs. ExPASy TrEMBL
Match: A0A0V0J1S7 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LYIEGYLQAMLDT+YKQEYLRVRVIDNQVILKNLP
Sbjct: 3021 ELYIEGYLQAMLDTLYKQEYLRVRVIDNQVILKNLP 3056

[Close]
BLAST of Clc01G16190 vs. TAIR 10
Match: AT3G50380.1 (Protein of unknown function (DUF1162) )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 43   KLYIEGYLQAMLDTMYKQEYLRVRVIDNQVILKNLP 79
            +LYIEGYLQAMLDTMY+QEYLRV+VID+QV LKNLP
Sbjct: 2879 ELYIEGYLQAMLDTMYRQEYLRVKVIDDQVFLKNLP 2914

The following BLAST results are available for this feature:
BLAST of Clc01G16190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132800.13.5e-0994.44uncharacterized protein LOC111005570 isoform X2 [Momordica charantia][more]
XP_022132801.13.5e-0994.44uncharacterized protein LOC111005570 isoform X3 [Momordica charantia][more]
XP_022132799.13.5e-0994.44uncharacterized protein LOC111005570 isoform X1 [Momordica charantia][more]
XP_010316168.16.0e-0994.44uncharacterized protein LOC101257436 isoform X2 [Solanum lycopersicum][more]
XP_006338248.16.0e-0994.44PREDICTED: uncharacterized protein LOC102601421 isoform X1 [Solanum tuberosum][more]
BLAST of Clc01G16190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G16190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BTB21.7e-0994.44uncharacterized protein LOC111005570 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1BU461.7e-0994.44uncharacterized protein LOC111005570 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1BTH41.7e-0994.44uncharacterized protein LOC111005570 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A2G2XIL42.9e-0994.44SHR-BD domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_05816 PE... [more]
A0A0V0J1S72.9e-0994.44Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
BLAST of Clc01G16190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G50380.11.4e-1186.11Protein of unknown function (DUF1162) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G16190.1Clc01G16190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045053 protein retention in Golgi apparatus
biological_process GO:0006623 protein targeting to vacuole
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0016021 integral component of membrane