Clc01G16010 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G16010
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase RNF185
Location	ClcChr01: 28820027 .. 28821295 (+)
RNA-Seq Expression	Clc01G16010
Synteny	Clc01G16010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAAAGATTATCTTTCATTGCAATGGAAATAGCCACAAGTGTAGAGATTTCATTTTCTAGTGCTTATGAAGTAGGTTAGCTGATACTGTGATCACATATATGTATGCTTGATAATACTTACTGTGAGGTTCCCATCAATTCATGTTATAGATGTCCCAAAGGACTTGTGGTTGCTGCTTTCTTTTTCTGACCAGGCCTGTTCACATCATGCTACTGGGAAACTTCTTTACCCCACATCATGCTACTGGGAAACTTCTTTACCCCAACAGTAATAAAGTTAAATTATTGCTATTTTGTTCAAAAGAAATTTCTTTGCCTTAAGTTCATCTGGCAGCCTGCTGATATTAAATTGACACGGCTGCCCCTTTGACTGGATTGTGGTTGGATGAATCTACTTTTAATAGACTGTTAGAGTTTGCTAGACGACTTGATGGTTTTCTGCCACGTTGAAAGTTCAGACTGCTCATCAGTTCTGTAGTGTTTCTTGATTGCTTTGTTCCTGATCATCTTTTCTTTTGTTAGGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAG

mRNA sequence

ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAG

Coding sequence (CDS)

ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAG

Protein sequence

MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWWFDFCCVTLASSSESKFGLLC

Homology

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BLAST of Clc01G16010 vs. NCBI nr
Match: XP_038881107.1 (E3 ubiquitin-protein ligase RNF185-like [Benincasa hispida])

HSP 1 Score: 478.8 bits (1231), Expect = 2.9e-131
Identity = 220/228 (96.49%), Postives = 223/228 (97.81%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTSVPHQN SWS NS+TTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSVPHQNSSWSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGKIPSDPRLNRYPGIDIP+RPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALVQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           PVPNDF NYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PVPNDFPNYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228

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BLAST of Clc01G16010 vs. NCBI nr
Match: XP_008440158.1 (PREDICTED: E3 ubiquitin-protein ligase RNF185 [Cucumis melo] >XP_008440160.1 PREDICTED: E3 ubiquitin-protein ligase RNF185 [Cucumis melo])

HSP 1 Score: 476.9 bits (1226), Expect = 1.1e-130
Identity = 220/228 (96.49%), Postives = 224/228 (98.25%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTS+PH+NPS S NS+TTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSMPHRNPSCSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           PVPNDFANYGFGFTGGFMPMA+ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PVPNDFANYGFGFTGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228

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BLAST of Clc01G16010 vs. NCBI nr
Match: TYK12950.1 (E3 ubiquitin-protein ligase RNF185 [Cucumis melo var. makuwa])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 219/228 (96.05%), Postives = 224/228 (98.25%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTS+PH+NPS S NS+TTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSMPHRNPSCSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALVQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           PVPNDFANYGFGFTGGFMPMA+ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PVPNDFANYGFGFTGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228

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BLAST of Clc01G16010 vs. NCBI nr
Match: XP_022949606.1 (E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata] >XP_022978947.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita maxima] >XP_023543222.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >KAG7034387.1 RING finger protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 470.7 bits (1210), Expect = 7.8e-129
Identity = 215/228 (94.30%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTSVPHQNPSWS+NS+ TNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGK PSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           P  NDFANYGFGFTGGFMPMA ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQP +RGQHADNVLKNL LLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 228

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BLAST of Clc01G16010 vs. NCBI nr
Match: KAG6604228.1 (E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 470.7 bits (1210), Expect = 7.8e-129
Identity = 215/228 (94.30%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTSVPHQNPSWS+NS+ TNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 59  MANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 118

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGK PSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 119 WLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPP 178

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           P  NDFANYGFGFTGGFMPMA ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 179 PAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 238

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQP +RGQHADNVLKNL LLVGVFVILALLWW
Sbjct: 239 YPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 286

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BLAST of Clc01G16010 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.1e-28
Identity = 86/245 (35.10%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 9   TSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQC 68
           T  P + P+ S+N +    ++  FECNIC + A+D +++LCGHLFCWPCL +WL      
Sbjct: 5   TKAPSEEPTSSSNKD----ESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNN 64

Query: 69  QECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFAN 128
           Q CPVCK+ I   K+VP+YGRG   SDPR        +P RP GQR +    P P  FA 
Sbjct: 65  QVCPVCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE----PPPQSFAG 124

Query: 129 YGFGFTGGFMPMATARIG-NFTLATAFGGLIPSLFNIQF-HG-FP---DATVYGTTSAYP 188
           + +G  GG M      +  +F + T   GL P +F + F  G FP    A+ +G  +   
Sbjct: 125 FNWGGDGGMMGGGGPNVHFSFGIGTV-NGLFPLMFMLPFIQGIFPLSFVASFFGNGNQGA 184

Query: 189 YAFNAFHGG------------HGH-HFPQ-------PSTRGQHADNVLKNLLLLVGVFVI 228
            A    +GG            HGH H P+       P +R    +  L N+   +G F++
Sbjct: 185 AAAGGGNGGGNDGNDGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFML 234

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BLAST of Clc01G16010 vs. ExPASy Swiss-Prot
Match: Q91YT2 (E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.3e-25
Identity = 76/180 (42.22%), Postives = 95/180 (52.78%), Query Frame = 0


Query: 14  QNPSWSANSETTN--------NDTGD-------FECNICFELAQDPIITLCGHLFCWPCL 73
           + PS SA++E +N        N TG+       FECNIC + A+D +I+LCGHLFCWPCL
Sbjct: 4   KGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCL 63

Query: 74  YRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKI-PSDPRLNRYPGIDIPNRPAGQRPQT 133
           ++WL      Q CPVCKA I  +K++PLYGRG     DPR         P RP GQRP+ 
Sbjct: 64  HQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQGQRPE- 123

Query: 134 APPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGT 178
             P     F  +GFG  GGF    +  IG F       G+  + FNI   G P   V GT
Sbjct: 124 --PENRGGFQGFGFG-DGGF--QMSFGIGAFPF-----GIFATAFNIN-DGRPPPAVPGT 165

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BLAST of Clc01G16010 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-24
Identity = 74/173 (42.77%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 7   ESTSVPHQNPSWSANSETTN-NDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHH 66
           +S+S    + S S+N    N N    FECNIC + A+D +I+LCGHLFCWPCL++WL   
Sbjct: 13  KSSSTGGTSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR 72

Query: 67  SQCQECPVCKALIQEEKLVPLYGRGKI-PSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPN 126
              Q CPVCKA I  +K++PLYGRG     DPR         P RP GQRP+   P    
Sbjct: 73  PNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQGQRPE---PENRG 132

Query: 127 DFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGT 178
            F  +GFG  GGF    +  IG F       G+  + FNI   G P   V GT
Sbjct: 133 GFQGFGFG-DGGF--QMSFGIGAFPF-----GIFATAFNIN-DGRPPPAVPGT 167

[Close]

BLAST of Clc01G16010 vs. ExPASy Swiss-Prot
Match: Q5RFK9 (E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24
Identity = 75/183 (40.98%), Postives = 97/183 (53.01%), Query Frame = 0


Query: 1   MANEFGESTSVPHQN----PSWSAN-SETTNNDTGDFECNICFELAQDPIITLCGHLFCW 60
           MA++   ++S P  +    PS S+N +  +      FECNIC + A+D +I+LCGHLFCW
Sbjct: 1   MASKGPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60

Query: 61  PCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKI-PSDPRLNRYPGIDIPNRPAGQR 120
           PCL++WL      Q CPVCKA I  +K++PLYGRG     DPR         P RP GQR
Sbjct: 61  PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQGQR 120

Query: 121 PQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATV 178
           P+   P     F  +GFG  GGF    +  IG F       G+  + FNI   G P   V
Sbjct: 121 PE---PENRGGFQGFGFG-DGGF--QMSFGIGAFPF-----GIFATAFNIN-DGRPPPAV 165

[Close]

BLAST of Clc01G16010 vs. ExPASy Swiss-Prot
Match: Q568Y3 (E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24
Identity = 75/180 (41.67%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 6   GESTSVPHQNPSWSANSETTNNDTGD-------FECNICFELAQDPIITLCGHLFCWPCL 65
           G S S   +N S +     ++N TG+       FECNIC + A+D +I+LCGHLFCWPCL
Sbjct: 5   GPSASASTENSS-AGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCL 64

Query: 66  YRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKI-PSDPRLNRYPGIDIPNRPAGQRPQT 125
           ++WL      Q CPVCKA I  +K++PLYGRG     DPR         P RP GQRP+ 
Sbjct: 65  HQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK------TPPRPQGQRPE- 124

Query: 126 APPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGT 178
             P     F  +GFG  GGF    +  IG F       G+  + FNI   G P   V GT
Sbjct: 125 --PENRGGFQGFGFG-DGGF--QMSFGIGAFPF-----GIFATAFNIN-DGRPPPAVPGT 165

[Close]

BLAST of Clc01G16010 vs. ExPASy TrEMBL
Match: A0A1S3B021 (E3 ubiquitin-protein ligase RNF185 OS=Cucumis melo OX=3656 GN=LOC103484707 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.3e-131
Identity = 220/228 (96.49%), Postives = 224/228 (98.25%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTS+PH+NPS S NS+TTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSMPHRNPSCSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           PVPNDFANYGFGFTGGFMPMA+ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PVPNDFANYGFGFTGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228

[Close]

BLAST of Clc01G16010 vs. ExPASy TrEMBL
Match: A0A5D3CNC7 (E3 ubiquitin-protein ligase RNF185 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005460 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 6.9e-131
Identity = 219/228 (96.05%), Postives = 224/228 (98.25%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTS+PH+NPS S NS+TTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSMPHRNPSCSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALVQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           PVPNDFANYGFGFTGGFMPMA+ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PVPNDFANYGFGFTGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228

[Close]

BLAST of Clc01G16010 vs. ExPASy TrEMBL
Match: A0A6J1IMG5 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita maxima OX=3661 GN=LOC111478748 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.8e-129
Identity = 215/228 (94.30%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTSVPHQNPSWS+NS+ TNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGK PSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           P  NDFANYGFGFTGGFMPMA ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQP +RGQHADNVLKNL LLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 228

[Close]

BLAST of Clc01G16010 vs. ExPASy TrEMBL
Match: A0A6J1GCG3 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC111452948 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.8e-129
Identity = 215/228 (94.30%), Postives = 219/228 (96.05%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60
           MANEFGESTSVPHQNPSWS+NS+ TNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR
Sbjct: 1   MANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYR 60

Query: 61  WLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120
           WLHHHSQCQECPVCKAL+QEEKLVPLYGRGK PSDPRLNRYPGIDIPNRPAGQRPQTAPP
Sbjct: 61  WLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPP 120

Query: 121 PVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 180
           P  NDFANYGFGFTGGFMPMA ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 
Sbjct: 121 PAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSG 180

Query: 181 YPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
           YPYAFN FHGGHGHHFPQP +RGQHADNVLKNL LLVGVFVILALLWW
Sbjct: 181 YPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 228

[Close]

BLAST of Clc01G16010 vs. ExPASy TrEMBL
Match: A0A0A0KG01 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G487690 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.1e-127
Identity = 216/229 (94.32%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MANEFGESTSVPHQNPSWSANSETT-NNDTGDFECNICFELAQDPIITLCGHLFCWPCLY 60
           MANEFGESTS+PHQNPS S NS+TT NNDTGDFECNICFELAQDPIITLCGHLFCWPCLY
Sbjct: 1   MANEFGESTSMPHQNPSCSTNSDTTNNNDTGDFECNICFELAQDPIITLCGHLFCWPCLY 60

Query: 61  RWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAP 120
           RWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLN YPG+DIPNRPAGQRPQTAP
Sbjct: 61  RWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNTYPGLDIPNRPAGQRPQTAP 120

Query: 121 PPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 180
           PPVPN+F NYGFGF GGFMPMA+ARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS
Sbjct: 121 PPVPNNFPNYGFGFAGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTS 180

Query: 181 AYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229
            YPYAFN FHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW
Sbjct: 181 GYPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 229

[Close]

BLAST of Clc01G16010 vs. TAIR 10
Match: AT2G23780.1 (RING/U-box superfamily protein )

HSP 1 Score: 276.6 bits (706), Expect = 2.0e-74
Identity = 139/230 (60.43%), Postives = 168/230 (73.04%), Query Frame = 0


Query: 6   GESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHH 65
           GES++    + S+S ++  TN+  GDFECNICFELAQDPI+TLCGHLFCWPCLYRWLHHH
Sbjct: 4   GESST----STSYSDSNNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHH 63

Query: 66  SQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQT-APPPVP- 125
           S  QECPVCKA++Q++KLVPLYGRGK  +DPR  RYPG+ IPNRP GQRP+T APPP P 
Sbjct: 64  SHSQECPVCKAVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPE 123

Query: 126 --NDFANYGFGFTGGFMP-MATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA 185
             ++F NYG G  GG MP MAT R GNF++   FGGL+PSLFN QFHGF DAT+YG+T  
Sbjct: 124 AASNFFNYGIGLMGGIMPMMATTRFGNFSM--GFGGLLPSLFNFQFHGFHDATLYGSTPG 183

Query: 186 YPYA--FNAFHGGHGHHFPQPSTR-GQHADNVLKNLLLLVGVFVILALLW 228
           YPY    N F G       +P  R G  +D  LKN+L  VG+ V++ L+W
Sbjct: 184 YPYGGYHNGFRGVPPRGQERPMARGGNQSDAFLKNILFFVGICVVIFLIW 227

[Close]

BLAST of Clc01G16010 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 265.8 bits (678), Expect = 3.5e-71
Identity = 131/219 (59.82%), Postives = 169/219 (77.17%), Query Frame = 0


Query: 16  PSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCK 75
           PS S+ ++T NND+ +FECNIC +LAQDPI+TLCGHLFCWPCLY+WLH HSQ ++CPVCK
Sbjct: 5   PSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCK 64

Query: 76  ALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPN-DFA-NYGF-G 135
           A+I+E++LVPLYGRGK  +DPR    PG+++PNRP+GQRP+TA PP PN  FA ++GF G
Sbjct: 65  AVIEEDRLVPLYGRGKSSADPRSKSIPGLEVPNRPSGQRPETAQPPDPNHGFAHHHGFGG 124

Query: 136 FTGGF-MPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSA--YPYAF-NAF 195
           F GGF  PMA+AR GN TL+ AFGGLIPSLFN+ FHGFPDA +YG  ++  +P+ F N F
Sbjct: 125 FMGGFAAPMASARFGNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNPF 184

Query: 196 HGGHG--HHFPQPSTRGQHADNVLKNLLLLVGVFVILAL 226
           HGGH   H + + + R    D+ L+ LLL+V V V+ +L
Sbjct: 185 HGGHSHMHSYQRHTGRQGQQDHHLRILLLIVFVVVVFSL 223

[Close]

BLAST of Clc01G16010 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 9.1e-35
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 21  NSETTNND--TGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALI 80
           N+ T   D  + +F CNIC ELA++PI+TLCGHLFCWPCLY+WLH+HS+   CPVCKAL+
Sbjct: 4   NTITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALV 63

Query: 81  QEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGG-- 140
           +E+ LVPLYG GK  SDPR     G+ +PNRPA  R +TA P +  +  ++G  F GG  
Sbjct: 64  KEDTLVPLYGMGKPSSDPRSKLNSGVTVPNRPAATRTETARPRL--EQRHHGSSFFGGHS 123

Query: 141 -FMPMATA-RIGNFTL 151
            F  M T  R  NF L
Sbjct: 124 SFAAMPTGLRFSNFLL 137

[Close]

BLAST of Clc01G16010 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-20
Identity = 47/96 (48.96%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 27  NDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHH-------SQCQECPVCKALIQ 86
           N++G F+CNIC + A DP++TLCGHLFCWPC+Y+WLH              CPVCK+ I 
Sbjct: 37  NESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNIT 96

Query: 87  EEKLVPLYGRG-KIPSD---PRLNRYPGIDIPNRPA 112
              LVPLYGRG   PS     +       DIP RPA
Sbjct: 97  ITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPA 132

[Close]

BLAST of Clc01G16010 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-20
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 23  ETTNNDT-GDFECNICFELAQDPIITLCGHLFCWPCLYRWLH-------------HHSQC 82
           +TT  D+ GDF+CNIC +  +DP++TLCGHLFCWPC+++W +             H  + 
Sbjct: 9   DTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREP 68

Query: 83  QECPVCKALIQEEKLVPLYGRG-KIPSDPRLNRYPGIDIPNRPAG 113
            +CPVCK+ + E  LVP+YGRG K P         G ++P+RP G
Sbjct: 69  PKCPVCKSDVSEATLVPIYGRGQKAPQS-------GSNVPSRPTG 106

The following BLAST results are available for this feature:

BLAST of Clc01G16010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881107.1	2.9e-131	96.49	E3 ubiquitin-protein ligase RNF185-like [Benincasa hispida]	[more]
XP_008440158.1	1.1e-130	96.49	PREDICTED: E3 ubiquitin-protein ligase RNF185 [Cucumis melo] >XP_008440160.1 PRE...	[more]
TYK12950.1	1.4e-130	96.05	E3 ubiquitin-protein ligase RNF185 [Cucumis melo var. makuwa]	[more]
XP_022949606.1	7.8e-129	94.30	E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata] >XP_022978947.1 E3 ...	[more]
KAG6604228.1	7.8e-129	94.30	E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc01G16010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09463	8.1e-28	35.10	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]
Q91YT2	8.3e-25	42.22	E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1	[more]
Q5ZIR9	2.4e-24	42.77	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]
Q5RFK9	4.1e-24	40.98	E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1	[more]
Q568Y3	4.1e-24	41.67	E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 ...	[more]

BLAST of Clc01G16010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B021	5.3e-131	96.49	E3 ubiquitin-protein ligase RNF185 OS=Cucumis melo OX=3656 GN=LOC103484707 PE=4 ...	[more]
A0A5D3CNC7	6.9e-131	96.05	E3 ubiquitin-protein ligase RNF185 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1IMG5	3.8e-129	94.30	E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita maxima OX=3661 GN=LOC111478...	[more]
A0A6J1GCG3	3.8e-129	94.30	E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0KG01	2.1e-127	94.32	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G487690 P...	[more]

BLAST of Clc01G16010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23780.1	2.0e-74	60.43	RING/U-box superfamily protein	[more]
AT1G19310.1	3.5e-71	59.82	RING/U-box superfamily protein	[more]
AT1G74990.1	9.1e-35	52.94	RING/U-box superfamily protein	[more]
AT4G27470.1	2.2e-20	48.96	RING membrane-anchor 3	[more]
AT4G28270.1	3.7e-20	42.86	RING membrane-anchor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 34..74 e-value: 9.6E-7 score: 38.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 34..75 score: 13.212175
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 3..88 e-value: 8.6E-18 score: 66.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 32..79 e-value: 5.9E-8 score: 32.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..120
None	No IPR available	PANTHER	PTHR12313:SF47	RING ZINC FINGER PROTEIN-RELATED	coord: 2..227
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 32..76 e-value: 7.52914E-29 score: 101.612
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 30..87
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..227
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 49..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G16010.2	Clc01G16010.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity