Clc01G15865 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G15865
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	ClcChr01: 28649399 .. 28652068 (+)
RNA-Seq Expression	Clc01G15865
Synteny	Clc01G15865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGCTACCAACAATTTTCCAGCAGCCACCAGAATGCCCAACTTCAACAGTCCTCCTTTAAATCAATTGCTGAACCAAATTACCACTATTAAGTTGGACCGAGGGAATTTTCTTCTTTAGAAGAACTTGGCTCTTCCCATCCTTCGCGGCTACAGAATTGAAGGATACCTTTTAGGGCACAAAATCTGCCCACCCATGTTTATTCGACAGAACCCCAGCAATGCAAGCAATGAAACATCTATTGCTGAAGCATCCAGCTCCCAAGTCACAACCAGCGACCCAGTGACATTCGCGACAACCGAAATCATCAATCCAGAGTATGAAGCCTGGCTTGTCGTTGATCAGTTGCTCCTCGGATGGCTTTACAACTCCATAACACCAGAAATTGCCACTCAACTCATGGGGTTTGAACGATCGAAAGATTTATGGGATGCTATCCAAGAATTATTCGGGGTTCAGTCTAGAGCAGAGGAAGACTACCTCCGCCAGACATTCCAACAGACCAGAAAAGGTAACAATACTATGTCTGAGTATTTACGCTTGATGAAAATGCACTCTAACAATTTAGGGCAAGCTGGAAGTCCTGGCCCATCAAAAGCATTAATATCCCAGGTTCTGCTTGGGCTTGATGAAAATTACAATGCCATCGTTGCCACCCTTCAAAGGAAACCTGACATCAGTTGGCTGTAGATGCAATCTGAGTTGTTATCATTTGAAAAAAGACTGGAAGCACAAAACTCTCAAAGTAACTCTGCAGTGAGCAACAATCCATTGATTAACATGGCTATCAACAAAGGAAAAGCAACTCAGCCACCACAACACCCAACGTCACAAAATCAGGGTCGCGGCGGAAATCAACACACTCAACGTGGAGGCAATCAGTGTGGAAATAGAGGTCAGGGCAGAGGAAGAAATTGACCCACCTGCCAAGTATGTGGAAAGATTGGTCATACAGCTGATGTCTGCTACAATCGCTTCAACAAAGAATTTAATCCTAATCAGCCCCAAAGTCAAGGTACCAACAACCTCAGACCTAACAATGGCAGGAAACCCTCCACAGCGCTGATTGCCACAAATAATGGTAATTCGTGACTGCACTACTGATCAGAATTGGTATGCCGACAGTGGAGCAACCAACCATGTGACATCCGACTACACCAATCTCACCCACCCAACTGAGTATGGAGGTACGAAGTTAGTTACTGTTGGCAATGGTAATACACTTAAAATTGCATCTGTTGGTAATACTGTTCTGACTAATGGGAAACACTTGTTGAACTTAAAGAATATACTGCATGTTCCGGATATAGCTAAGAACCTTGTTAGTGTATCAAAACTTGCTAAGGACAATAACGTTTTTGTTGAATTTCATGAGGATTATTGTCTTGTAAAGGACAAGGGTTCAGAGCAAACAGTTTTGAAGGGCACACTTAAAGATGGACTTTATCATTTAGAGGAAACCACGGTGGCGTCTCATGATGCGGTTCCGGTGAATTCTGCTGCTTGCCCACTCAAGGAGGCTGTGAACATAAATAAGGAGAATGAATCTGCCTTATCTCCTTCTCGTATTTCTATTAATAGTGCTGTAACTAAAACTACTTCGCATCGACGGTTGGGACATTCTTCCTCGAGAATTTTTTATTTGATCACCAAAGGTTGTAATATCTCGTTTAAAAGCGATGCAACTGAATTTTGTCATGCATGTCAATTGGGTAAATCACACCGTCTTCTATTTTCTTCATCTGAATCTCGTGCTTTGAAAGCTTTTGAGTTAATTCATACAGATGTGTGGGGCCCTACTTCTATGCTATCTTCTGCTGGTTTTCGATATTATGTATTGTTTCTTGATGACTTCAGCCGATATGTCTGGATTTACCCTCTTCGTTTAAAAGGCGATACAATGGTAGCTTTTGAACACTTCATGCAGATGATGCACACTCAGTTTAATAGCAGCATCAAAGCTATACAATCTGATAACGGTGGAGAATACAAGAGAATTCATTAATTATGTGACAAACTGGGAATCGTGACACGGCTGTTATGCCCGTATACCTCCATTCAAAATGGCCGAGCCGAACGGAAACATCGCCACGTTGTTGAAATGGGCCTAACGTTATTAGCCCAGGCATCACTACCTCTCCAATTTTGGTGGGACGCGTTCCAAATAGCTGTTTATTTAATTAACCGTCTTCCTACTCCAACACTTTGTAGGATCGGTATGGCAACCCTAGAGGGGGGTGAATAGGGTTTAATTAAACTTATTCCTAAATATGCTCAAATTAAACTAATTGAATTAATTTTTTTTAAATTAAATTAATAAAAACCTTAATTGATGCTAAATATCAAGATTGATAAAAAAAATATATGAAACACAAGATTCAATCAATCTCAACAAAGAAGGATAGTAATCTATAACATGCTACTAAAAATTGAATGCAAAATAACTAAAAATTGAATGCAAAATAAATTGAGAAAGAGTTGGAGAAAAAGACACTGTGATTTTTATAGTGGTTCGGTCCAACTCGACCTACATCCACTTTTCCAAGCGCCTATTGGGATTTCGATTAAAAAATCTCCTTTGACTCTCTCCACGGATGAGAGTCGAATCGCTACCTTGCTCCTTTTTCGGGTTCAAGAGCAAACCCGATCCTTTCCACGGGTTAG

mRNA sequence

ATGGCCAACGCTACCAACAATTTTCCAGCAGCCACCAGAATGCCCAACTTCAACAGTCCTCCTTTAAATCAATTGCTGAACCAAATTACCACTATTAAAATTGAAGGATACCTTTTAGGGCACAAAATCTGCCCACCCATGTTTATTCGACAGAACCCCAGCAATGCAAGCAATGAAACATCTATTGCTGAAGCATCCAGCTCCCAAGTCACAACCAGCGACCCAGTGACATTCGCGACAACCGAAATCATCAATCCAGAGTATGAAGCCTGGCTTGTCGTTGATCAGTTGCTCCTCGGATGGCTTTACAACTCCATAACACCAGAAATTGCCACTCAACTCATGGGGTTTGAACGATCGAAAGATTTATGGGATGCTATCCAAGAATTATTCGGGGTTCAGTCTAGAGCAGAGGAAGACTACCTCCGCCAGACATTCCAACAGACCAGAAAAGGTAACAATACTATGTCTGAGTATTTACGCTTGATGAAAATGCACTCTAACAATTTAGGGCAAGCTGGAAGTCCTGGCCCATCAAAAGCATTAATATCCCAGGTTCTGCTTGGGCTTGATGAAAATTACAATGCCATCGTTGCCACCCTTCAAAGGAAACCTGACATCAGTTGGCTCCACCACAACACCCAACGTCACAAAATCAGGGTCGCGGCGGAAATCAACACACTCAACGTGGAGGCAATCAGTGTGGAAATAGAGGTCAGGGCAGAGGAAGAAATTGACCCACCTGCCAAGTATGTGGAAAGATTGGTCATACAGCTGATGTCTGCTACAATCGCTTCAACAAAGAATTTAATCCTAATCAGCCCCAAAGTCAAGAATTGGTATGCCGACAGTGGAGCAACCAACCATGTGACATCCGACTACACCAATCTCACCCACCCAACTGAGTATGGAGGTACGAAGTTAGTTACTGTTGGCAATGGTAATACACTTAAAATTGCATCTGTTGGTAATACTGTTCTGACTAATGGGAAACACTTGTTGAACTTAAAGAATATACTGCATGTTCCGGATATAGCTAAGAACCTTGTTAGTGTATCAAAACTTGCTAAGGACAATAACGTTTTTGTTGAATTTCATGAGGATTATTGTCTTGTAAAGGACAAGGGTTCAGAGCAAACAGTTTTGAAGGGCACACTTAAAGATGGACTTTATCATTTAGAGGAAACCACGGTGGCGTCTCATGATGCGGTTCCGGTGAATTCTGCTGCTTGCCCACTCAAGGAGGCTGTGAACATAAATAAGGAGAATGAATCTGCCTTATCTCCTTCTCGTATTTCTATTAATAGTGCTGTAACTAAAACTACTTCGCATCGACGGTTGGGACATTCTTCCTCGAGAATTTTTTATTTGATCACCAAAGGTTGTAATATCTCGTTTAAAAGCGATGCAACTGAATTTTGTCATGCATGTCAATTGGGTAAATCACACCGTCTTCTATTTTCTTCATCTGAATCTCGTGCTTTGAAAGCTTTTGAGTTAATTCATACAGATGTGTGGGGCCCTACTTCTATGCTATCTTCTGCTGGTTTTCGATATTATGTATTGTTTCTTGATGACTTCAGCCGATATGTCTGGATTTACCCTCTTCGTTTAAAAGGCGATACAATGGTAGCTTTTGAACACTTCATGCAGATGATGCACACTCAGTTTAATAGCAGCATCAAAGCTATACAATCTGATAACGAGTCGAATCGCTACCTTGCTCCTTTTTCGGGTTCAAGAGCAAACCCGATCCTTTCCACGGGTTAG

Coding sequence (CDS)

ATGGCCAACGCTACCAACAATTTTCCAGCAGCCACCAGAATGCCCAACTTCAACAGTCCTCCTTTAAATCAATTGCTGAACCAAATTACCACTATTAAAATTGAAGGATACCTTTTAGGGCACAAAATCTGCCCACCCATGTTTATTCGACAGAACCCCAGCAATGCAAGCAATGAAACATCTATTGCTGAAGCATCCAGCTCCCAAGTCACAACCAGCGACCCAGTGACATTCGCGACAACCGAAATCATCAATCCAGAGTATGAAGCCTGGCTTGTCGTTGATCAGTTGCTCCTCGGATGGCTTTACAACTCCATAACACCAGAAATTGCCACTCAACTCATGGGGTTTGAACGATCGAAAGATTTATGGGATGCTATCCAAGAATTATTCGGGGTTCAGTCTAGAGCAGAGGAAGACTACCTCCGCCAGACATTCCAACAGACCAGAAAAGGTAACAATACTATGTCTGAGTATTTACGCTTGATGAAAATGCACTCTAACAATTTAGGGCAAGCTGGAAGTCCTGGCCCATCAAAAGCATTAATATCCCAGGTTCTGCTTGGGCTTGATGAAAATTACAATGCCATCGTTGCCACCCTTCAAAGGAAACCTGACATCAGTTGGCTCCACCACAACACCCAACGTCACAAAATCAGGGTCGCGGCGGAAATCAACACACTCAACGTGGAGGCAATCAGTGTGGAAATAGAGGTCAGGGCAGAGGAAGAAATTGACCCACCTGCCAAGTATGTGGAAAGATTGGTCATACAGCTGATGTCTGCTACAATCGCTTCAACAAAGAATTTAATCCTAATCAGCCCCAAAGTCAAGAATTGGTATGCCGACAGTGGAGCAACCAACCATGTGACATCCGACTACACCAATCTCACCCACCCAACTGAGTATGGAGGTACGAAGTTAGTTACTGTTGGCAATGGTAATACACTTAAAATTGCATCTGTTGGTAATACTGTTCTGACTAATGGGAAACACTTGTTGAACTTAAAGAATATACTGCATGTTCCGGATATAGCTAAGAACCTTGTTAGTGTATCAAAACTTGCTAAGGACAATAACGTTTTTGTTGAATTTCATGAGGATTATTGTCTTGTAAAGGACAAGGGTTCAGAGCAAACAGTTTTGAAGGGCACACTTAAAGATGGACTTTATCATTTAGAGGAAACCACGGTGGCGTCTCATGATGCGGTTCCGGTGAATTCTGCTGCTTGCCCACTCAAGGAGGCTGTGAACATAAATAAGGAGAATGAATCTGCCTTATCTCCTTCTCGTATTTCTATTAATAGTGCTGTAACTAAAACTACTTCGCATCGACGGTTGGGACATTCTTCCTCGAGAATTTTTTATTTGATCACCAAAGGTTGTAATATCTCGTTTAAAAGCGATGCAACTGAATTTTGTCATGCATGTCAATTGGGTAAATCACACCGTCTTCTATTTTCTTCATCTGAATCTCGTGCTTTGAAAGCTTTTGAGTTAATTCATACAGATGTGTGGGGCCCTACTTCTATGCTATCTTCTGCTGGTTTTCGATATTATGTATTGTTTCTTGATGACTTCAGCCGATATGTCTGGATTTACCCTCTTCGTTTAAAAGGCGATACAATGGTAGCTTTTGAACACTTCATGCAGATGATGCACACTCAGTTTAATAGCAGCATCAAAGCTATACAATCTGATAACGAGTCGAATCGCTACCTTGCTCCTTTTTCGGGTTCAAGAGCAAACCCGATCCTTTCCACGGGTTAG

Protein sequence

MANATNNFPAATRMPNFNSPPLNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQRHKIRVAAEINTLNVEAISVEIEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDNESNRYLAPFSGSRANPILSTG

Homology

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BLAST of Clc01G15865 vs. NCBI nr
Match: PNX94503.1 (putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense])

HSP 1 Score: 307.4 bits (786), Expect = 2.7e-79
Identity = 218/621 (35.10%), Postives = 297/621 (47.83%), Query Frame = 0


Query: 3   NATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNE 62
           N  N+ P+  + ++   N P    L L  I   K +GY+LG K CP  F+          
Sbjct: 7   NQKNDLPSTVSVKLDRDNFPLWKSLVLPLIRGCKYDGYMLGTKKCPDQFV---------- 66

Query: 63  TSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFER 122
           TSI                  TE INP+Y+ W   DQ LLGWL NS+T +IATQ++  E 
Sbjct: 67  TSI----------------DNTEKINPDYQDWQADDQALLGWLMNSMTVDIATQVLHCET 126

Query: 123 SKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPS 182
           SK LWD  Q L G  +R+   YL+  F  T K    M +YL  MK  ++ L  AGSP  S
Sbjct: 127 SKQLWDEAQSLAGAHTRSRIIYLKSEFHNTHKREMKMEQYLAKMKNLADKLKLAGSPISS 186

Query: 183 KALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISV 242
             L+ Q L GLD  YN +V  L  + +ISW+    Q      ++      N +N+ A S 
Sbjct: 187 SDLMIQTLNGLDSEYNPVVVKLSDQTNISWVDFQAQLLAFESRLDQLNNFNNINLNA-SA 246

Query: 243 EIEVRAE---------------------------EEIDPPA------------------K 302
               + E                               PP                   +
Sbjct: 247 NFASKNESGGNKFGSRGGWRGSNSRGMRGGRGRARMSKPPRPICQICGKFGHTAAQCYYR 306

Query: 303 YVERLVIQLMSATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTK 362
           + +    +   A    + +  + SP   +   WY DSGA+NHVT     L    E  G  
Sbjct: 307 FDKSYTEKNHYAEGEGSHSAFVASPYHGQDYEWYFDSGASNHVTHQSGQLQDLNENNGKN 366

Query: 363 LVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHE 422
            + VGNG  LKI + G+T L +    +NL+N+L+VP+I KNL+SVSKL  DNN  VEF E
Sbjct: 367 SLLVGNGEKLKILASGSTKLND----VNLRNVLYVPEITKNLLSVSKLTIDNNALVEFDE 426

Query: 423 DYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESAL 482
           +YC VKDK + + +LKG LKDGLY L     +++   P N   C                
Sbjct: 427 NYCYVKDKLTGKALLKGRLKDGLYQL-----SANKEPPTNKDPC---------------- 486

Query: 483 SPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLL 542
             + IS+     K   HR+LGH ++++   + K  N+    SD   FC ACQ GK H L 
Sbjct: 487 --AYISL-----KEIWHRKLGHPNNKVLEKVLKDNNVKISPSDKFTFCEACQFGKLHLLP 546

Query: 543 FSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF 568
           F +S S A +  +LIHTDVWGP  +LS + F+YYV FLDDFSR+ WI+PL+ K +T+ AF
Sbjct: 547 FKTSSSHAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAF 568

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BLAST of Clc01G15865 vs. NCBI nr
Match: PNY01489.1 (copia-like polyprotein, partial [Trifolium pratense])

HSP 1 Score: 304.7 bits (779), Expect = 1.8e-78
Identity = 216/622 (34.73%), Postives = 302/622 (48.55%), Query Frame = 0


Query: 2   ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASN 61
           +N  N+ P+  + ++   N P    L L  I   K +GY+LG K CP  F          
Sbjct: 7   SNKKNDLPSIISVKLDRDNYPLWKSLVLPLIRGCKFDGYILGTKECPEQF---------- 66

Query: 62  ETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFE 121
                      VT++D      ++ +NP+++ W+  DQ LLGWL NS+  +IATQL+  E
Sbjct: 67  -----------VTSAD-----KSKKVNPDFQDWMADDQALLGWLMNSMAIDIATQLLHCE 126

Query: 122 RSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGP 181
            SK LWD  Q L G  +++   YL+  F  TRKG   M EYL  MK  S+ L  +GSP  
Sbjct: 127 TSKQLWDEAQSLAGAHTKSRIIYLKSEFHNTRKGEMKMEEYLIKMKNLSDKLKLSGSPIS 186

Query: 182 SKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQRHKIRVAAEIN--------TLNV 241
           +  L+ Q L GLD  YN +V  L  + ++SW+  + Q   +   + ++        TLN 
Sbjct: 187 NSDLMIQTLNGLDAEYNPVVVKLSDQINLSWV--DVQAQLLAFESRLDQLNNFSGLTLNA 246

Query: 242 EA-ISVEIEVRAEE--------------------------------------EIDPPAKY 301
            A  + + E R  +                                       +D   ++
Sbjct: 247 SANFANKTEFRGNKFHSRGNWRRSNFRGMRGGRGKGRMSNTKCQVCSGTGHTAVDCSYRF 306

Query: 302 VERLVIQLMS--ATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGT 361
                 +  S  A    + +  + SP   +   WY DSGA+NHVT          E+ G 
Sbjct: 307 DRSYTGRNYSTEADKQGSHSAFVASPYHGQDYEWYFDSGASNHVTHQTDKFQGFNEHNGK 366

Query: 362 KLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFH 421
             + VGNG  LKI + G+T L    + LNL ++L+VP I KNL+SVSKL  DNN+FVEF 
Sbjct: 367 NSLMVGNGEKLKIVASGSTKL----NTLNLHDVLYVPQITKNLLSVSKLTADNNIFVEFD 426

Query: 422 EDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESA 481
            + C VKDK + QT+LKG LKDGLY L + +  S                   NK+    
Sbjct: 427 ANCCSVKDKLTGQTLLKGRLKDGLYQLSDVSPQS-------------------NKDPCVY 486

Query: 482 LSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRL 541
           +S           K + HR+LGH ++++   + K CN+    SD   FC ACQ GK H L
Sbjct: 487 MS----------VKESWHRKLGHPNNKVLEKVLKDCNVKISPSDQFSFCEACQFGKLHLL 546

Query: 542 LFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVA 568
            F SS S   +   LIH+DVWGP  +LS +GF+YYV F+DDFSR+ WI+PL+ K DT+ A
Sbjct: 547 PFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHA 567

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BLAST of Clc01G15865 vs. NCBI nr
Match: PNX76291.1 (gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense])

HSP 1 Score: 303.1 bits (775), Expect = 5.1e-78
Identity = 208/632 (32.91%), Postives = 301/632 (47.63%), Query Frame = 0


Query: 2   ANATNNFPA--ATRMPNFNSPP-LNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASN 61
           +N  N+ P+  + ++   N P   + +L  I   +++GY+LG K CP  FI         
Sbjct: 7   SNHKNDLPSTVSVKLDRDNYPLWQSMVLPIIRGARLDGYMLGKKKCPEEFI--------- 66

Query: 62  ETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFE 121
                       T +D     +++  NPE+E W   DQ LLGWL NS+T  IATQL+  E
Sbjct: 67  ------------TAAD-----SSKKFNPEFEDWQAYDQQLLGWLRNSMTVGIATQLLHCE 126

Query: 122 RSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGP 181
            S  LWD  Q L G  +R++  YL+  F  TRKG   M +YL  MK  ++ L  AG+P  
Sbjct: 127 TSMQLWDEAQSLAGAHTRSQITYLKSEFHSTRKGEMKMEDYLIKMKNLADKLKLAGNPIS 186

Query: 182 SKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEA-- 241
           +  LI Q L GLD  YN +V  L  +  +SW+    Q     ++I     +  L + A  
Sbjct: 187 TSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFENRIEQLNSLTNLTLNATA 246

Query: 242 --------------------------------------------------------ISVE 301
                                                                   I+++
Sbjct: 247 NVAKKSDHRGNRFNSNNNWRGSNNNWRGSNFRGWRGGRGRGRSFKTTCQVCGLDNHIAID 306

Query: 302 IEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTN 361
              R ++                 +A +AS  ++     +  +WY DSGA+NHVT     
Sbjct: 307 CFYRFDKTYSRSNHSANNDKQGSHNAFLASQNSI-----EDYDWYFDSGASNHVTHQTDK 366

Query: 362 LTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLA 421
             + +E+ G   + VGNG  L+I + G++ L +    LNL +IL+VP I KNL+SVSKLA
Sbjct: 367 FQNLSEHHGKNSLIVGNGEKLEIVATGSSKLKS----LNLHDILYVPKITKNLLSVSKLA 426

Query: 422 KDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEA 481
            DNN+ VEF E+ C VKDK + + +L+G LKDGLY L E   +++ ++            
Sbjct: 427 ADNNILVEFDENCCFVKDKLTGKAILRGILKDGLYQLSEKDSSAYVSI------------ 486

Query: 482 VNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCH 541
                                  K + HR+LGH ++++  ++ K CN+    SD   FC 
Sbjct: 487 -----------------------KESWHRKLGHPNNKVLDIVLKSCNVKLSPSDQFSFCE 546

Query: 542 ACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYP 568
           ACQ GK H L F +S S A +  EL+HTDVWGP  ++SS+GF+YYV F+DDF+R+ WIYP
Sbjct: 547 ACQYGKMHFLPFKTSFSHAKEILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWIYP 568

[Close]

BLAST of Clc01G15865 vs. NCBI nr
Match: PNX78574.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense])

HSP 1 Score: 302.4 bits (773), Expect = 8.7e-78
Identity = 220/621 (35.43%), Postives = 292/621 (47.02%), Query Frame = 0


Query: 2   ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASN 61
           +N  N+ P+  +  +   N P    L L  I   +++GY+LG K CP  FI         
Sbjct: 7   SNQKNDLPSRISVMLDRENFPLWKSLVLPIIRGCRLDGYILGTKECPEQFI--------- 66

Query: 62  ETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFE 121
             + AEAS  +              INP++  W   DQ +LGWL N++T   A+QL+  E
Sbjct: 67  --TSAEASGKK--------------INPDFGDWQAEDQRVLGWLLNTMTTGTASQLLHCE 126

Query: 122 RSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGP 181
            SK LW+  Q L    +R+   YLR  F  TRKG   M +YL  MK  ++ L  AGSP  
Sbjct: 127 TSKQLWEEAQSLASAHTRSRVIYLRSEFHNTRKGEKKMEDYLMKMKDLADKLKMAGSPIT 186

Query: 182 SKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAIS 241
           +  LI Q L GLD +YN IV  L  + ++SW+    Q      ++      N LN  A +
Sbjct: 187 NVDLIIQTLNGLDSDYNPIVVKLSDQINLSWVDLQAQLLAFESRLDQLNSFNNLNRNATT 246

Query: 242 VEI-----------------------------EVRAEEEIDPPAKYVERLVIQL-----M 301
                                           + R   +I           I+       
Sbjct: 247 NVANKAQFRGNIYNHRGSWRGSSFRNTRGGRGKGRPSNDICQVCNKHGHTAIECDHRYDK 306

Query: 302 SATIASTKNLILISPKVKN-------------WYADSGATNHVTSDYTNLTHPTEYGGTK 361
           S T +S  N  +   +  N             WY DSGA+NHVT         TE  G  
Sbjct: 307 SYTGSSYSNANVERQRTHNAFLASRYNSQDYEWYFDSGASNHVTHQADKFQELTENSGKN 366

Query: 362 LVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHE 421
            + VGNG  LKI + G++ L N    LNL ++L+VP I KNL+SVSKL  DNN+ VEF  
Sbjct: 367 SLIVGNGAKLKIDASGSSKLKN----LNLHDVLYVPQITKNLLSVSKLTSDNNIIVEFDN 426

Query: 422 DYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESAL 481
           D C VKDK + + +L+G LKDGLY L      S+ +   N   C                
Sbjct: 427 DCCFVKDKLTGKVLLRGILKDGLYQL------SNGSSQTNKDPCVYLS------------ 486

Query: 482 SPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNI-SFKSDATEFCHACQLGKSHRLL 541
                       K + HR+LGH S+ +   + K CN+ +  SD  +FC ACQLGKSH L 
Sbjct: 487 -----------VKESWHRKLGHPSNNVLDKVLKICNVKTSPSDKFKFCEACQLGKSHLLP 546

Query: 542 FSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF 568
           F SS S A +  ELIHTDVWGP  + S +GF+YYV F+DD SR+ WIYPL+ K DT+ AF
Sbjct: 547 FKSSSSHAQEVLELIHTDVWGPAPINSISGFKYYVHFIDDSSRFTWIYPLKQKSDTIHAF 569

[Close]

BLAST of Clc01G15865 vs. NCBI nr
Match: GAU19483.1 (hypothetical protein TSUD_77270 [Trifolium subterraneum])

HSP 1 Score: 301.2 bits (770), Expect = 1.9e-77
Identity = 213/620 (34.35%), Postives = 295/620 (47.58%), Query Frame = 0


Query: 2   ANATNNFPAATRMP-NFNSPPL--NQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASN 61
           +N  N+ P++  +  + N+ PL  + +L  I   K++GY+LG + CP  FI  + S+ + 
Sbjct: 7   SNNKNDLPSSVSVKLDRNNYPLWKSLVLPVIRGCKLDGYMLGTEGCPEEFITSSDSSKNK 66

Query: 62  ETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFE 121
            ++  E                          W   DQ LLGW+ NS+T EIATQL+  E
Sbjct: 67  NSAFVE--------------------------WQANDQRLLGWMLNSMTTEIATQLLHCE 126

Query: 122 RSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGP 181
            SK LWD  Q L G  +R++  YL+  F   RKG   M +YL  MK   + L  AG+P  
Sbjct: 127 TSKQLWDEAQSLAGAHTRSQIIYLKSEFHSIRKGEMKMEDYLIKMKNLVDKLKLAGNPVS 186

Query: 182 SKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQRHKIRVAAEINTL-NVEAISVEI 241
           +  LI Q L GLD  YN +V  L  +  +SW+  + Q   +   + I  L N+  +++  
Sbjct: 187 TSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWV--DLQAQLLTFESRIEQLNNLTNLTLNA 246

Query: 242 EVRAEEEIDPPAKYVE----------------RLVIQLMSATIASTKNLILI-------- 301
                   D   K                   R         +    N I I        
Sbjct: 247 TANVANRSDHRGKSSNNNWRGSNSRGWRGGRGRGKSGKNPCQVCGLSNHIAIDCFHRFDK 306

Query: 302 -------------------------SPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKL 361
                                    S +  +WY DSGA+NHVT         TE+ G   
Sbjct: 307 TYSRSNHSAGHDKQGSHNAFLASQNSVEDYDWYFDSGASNHVTHQTEKFQDLTEHHGKNS 366

Query: 362 VTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHED 421
           + VGNG  L I + G++ L +    LNL +IL+VP+I KNL+SVSKLA DNN+ VEF E+
Sbjct: 367 LVVGNGEKLAILATGSSKLKS----LNLHDILYVPNITKNLLSVSKLAADNNILVEFDEN 426

Query: 422 YCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALS 481
            C VKDK + + +LKG LKDGLY L  T                        K N SA  
Sbjct: 427 CCFVKDKLTGKVILKGLLKDGLYQLSGT------------------------KRNPSAF- 486

Query: 482 PSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISF-KSDATEFCHACQLGKSHRLLF 541
              +S+     K + HRRLGH ++++   + + C +    SD   FC ACQ GK H L F
Sbjct: 487 ---VSV-----KESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPF 546

Query: 542 SSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFE 568
            SS S A +  EL+HTDVWGP  +++S+GF+YYV F+DDFSR+ WIYPL+ K +T+ AF 
Sbjct: 547 KSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFI 561

[Close]

BLAST of Clc01G15865 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-44
Identity = 152/567 (26.81%), Postives = 243/567 (42.86%), Query Frame = 0


Query: 71  TTSDPVTFATTEI--INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQ 130
           TT  P T  T     +NP+Y  W   D+L+   +  +I+  +   +     +  +W+ ++
Sbjct: 55  TTMPPATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLR 114

Query: 131 ELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLL 190
           +++   S      LR   +Q  KG  T+ +Y++ +    + L   G P      + +VL 
Sbjct: 115 KIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLE 174

Query: 191 GLDENYNAIVATLQRK---PDISWLHHNTQRHKIRV----AAEINTLNVEAIS------- 250
            L E Y  ++  +  K   P ++ +H     H+ ++    +A +  +   A+S       
Sbjct: 175 NLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTT 234

Query: 251 ---------VEIEVRAEEEIDPP-------------------------------AKYVER 310
                       + R       P                               AK   +
Sbjct: 235 NNNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQ 294

Query: 311 LVIQLMSATIAS----------TKNLILISP-KVKNWYADSGATNHVTSDYTNLTHPTEY 370
           L   L S                 NL L SP    NW  DSGAT+H+TSD+ NL+    Y
Sbjct: 295 LQHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPY 354

Query: 371 GGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFV 430
            G   V V +G+T+ I+  G+T L+     LNL NIL+VP+I KNL+SV +L   N V V
Sbjct: 355 TGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSV 414

Query: 431 EFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKEN 490
           EF      VKD  +   +L+G  KD LY   E  +AS  + PV+  A P           
Sbjct: 415 EFFPASFQVKDLNTGVPLLQGKTKDELY---EWPIAS--SQPVSLFASP----------- 474

Query: 491 ESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATEF--CHACQLGK 550
                      +S  T ++ H RLGH +  I   +    ++S  + + +F  C  C + K
Sbjct: 475 -----------SSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINK 534

Query: 551 SHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGD 569
           S+++ FS S   + +  E I++DVW  + +LS   +RYYV+F+D F+RY W+YPL+ K  
Sbjct: 535 SNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQ 593

[Close]

BLAST of Clc01G15865 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-38
Identity = 103/303 (33.99%), Postives = 154/303 (50.83%), Query Frame = 0


Query: 269 NLILISP-KVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVL 328
           NL + SP    NW  DSGAT+H+TSD+ NL+    Y G   V + +G+T+ I   G+  L
Sbjct: 298 NLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASL 357

Query: 329 TNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLK 388
                 L+L  +L+VP+I KNL+SV +L   N V VEF      VKD  +   +L+G  K
Sbjct: 358 PTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTK 417

Query: 389 DGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRL 448
           D LY   E  +AS  AV + ++ C                        S  T ++ H RL
Sbjct: 418 DELY---EWPIASSQAVSMFASPC------------------------SKATHSSWHSRL 477

Query: 449 GHSSSRIFYLITKGCNISFKSDATEF--CHACQLGKSHRLLFSSSESRALKAFELIHTDV 508
           GH S  I   +    ++   + + +   C  C + KSH++ FS+S   + K  E I++DV
Sbjct: 478 GHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDV 537

Query: 509 WGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQ 568
           W  + +LS   +RYYV+F+D F+RY W+YPL+ K      F  F  ++  +F + I  + 
Sbjct: 538 WS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLY 572

[Close]

BLAST of Clc01G15865 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-22
Identity = 83/298 (27.85%), Postives = 135/298 (45.30%), Query Frame = 0


Query: 273 ISPKVKNWYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGN-TVLTNGK 332
           +S     W  D+ A++H T    +L      G    V +GN +  KIA +G+  + TN  
Sbjct: 287 LSGPESEWVVDTAASHHAT-PVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVG 346

Query: 333 HLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLY 392
             L LK++ HVPD+  NL+S   L +D       ++ + L K       + KG  +  LY
Sbjct: 347 CTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLY 406

Query: 393 HLEETTVASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSS 452
                          N+  C          + E   +   IS++        H+R+GH S
Sbjct: 407 R-------------TNAEIC----------QGELNAAQDEISVD------LWHKRMGHMS 466

Query: 453 SRIFYLITKGCNISF-KSDATEFCHACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTS 512
            +   ++ K   IS+ K    + C  C  GK HR+ F +S  R L   +L+++DV GP  
Sbjct: 467 EKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPME 526

Query: 513 MLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAFEHFMQMMHTQFNSSIKAIQSDN 569
           + S  G +Y+V F+DD SR +W+Y L+ K      F+ F  ++  +    +K ++SDN
Sbjct: 527 IESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

[Close]

BLAST of Clc01G15865 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-11
Identity = 84/322 (26.09%), Postives = 139/322 (43.17%), Query Frame = 0


Query: 283 DSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHV 342
           DSGA+  +      L H T      +V       + I ++GN               LH 
Sbjct: 457 DSGASQTLVRSAHYLHHATPNSEINIVD-AQKQDIPINAIGNLHFNFQNGTKTSIKALHT 516

Query: 343 PDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKD--KGSEQTVLKGTLKDGLYH--LEETTV 402
           P+IA +L+S+S+LA  N          C  ++  + S+ TVL   +K G ++   ++  +
Sbjct: 517 PNIAYDLLSLSELANQNIT-------ACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLI 576

Query: 403 ASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSR----- 462
            SH +             + IN  N+S       S+N        HR LGH++ R     
Sbjct: 577 PSHIS------------KLTINNVNKSK------SVNK-YPYPLIHRMLGHANFRSIQKS 636

Query: 463 -----IFYLITKGCNISFKSDATEFCHACQLGKS--HRLLFSS--SESRALKAFELIHTD 522
                + YL  K  +I + + +T  C  C +GKS  HR +  S      + + F+ +HTD
Sbjct: 637 LKKNAVTYL--KESDIEWSNASTYQCPDCLIGKSTKHRHIKGSRLKYQESYEPFQYLHTD 696

Query: 523 VWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPL--RLKGDTMVAFEHFMQMMHTQFNSSIK 582
           ++GP   L  +   Y++ F D+ +R+ W+YPL  R +   +  F   +  +  QFN+ + 
Sbjct: 697 IFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVL 749

[Close]

BLAST of Clc01G15865 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-11
Identity = 84/322 (26.09%), Postives = 139/322 (43.17%), Query Frame = 0


Query: 283 DSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHV 342
           DSGA+  +      L H T      +V       + I ++GN               LH 
Sbjct: 457 DSGASQTLVRSAHYLHHATPNSEINIVD-AQKQDIPINAIGNLHFNFQNGTKTSIKALHT 516

Query: 343 PDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKD--KGSEQTVLKGTLKDGLYH--LEETTV 402
           P+IA +L+S+S+LA  N          C  ++  + S+ TVL   +K G ++   ++  +
Sbjct: 517 PNIAYDLLSLSELANQNIT-------ACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLI 576

Query: 403 ASHDAVPVNSAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRRLGHSSSR----- 462
            SH +             + IN  N+S       S+N        HR LGH++ R     
Sbjct: 577 PSHIS------------KLTINNVNKSK------SVNK-YPYPLIHRMLGHANFRSIQKS 636

Query: 463 -----IFYLITKGCNISFKSDATEFCHACQLGKS--HRLLFSS--SESRALKAFELIHTD 522
                + YL  K  +I + + +T  C  C +GKS  HR +  S      + + F+ +HTD
Sbjct: 637 LKKNAVTYL--KESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTD 696

Query: 523 VWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPL--RLKGDTMVAFEHFMQMMHTQFNSSIK 582
           ++GP   L  +   Y++ F D+ +R+ W+YPL  R +   +  F   +  +  QFN+ + 
Sbjct: 697 IFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVL 749

[Close]

BLAST of Clc01G15865 vs. ExPASy TrEMBL
Match: A0A803PEH4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.3e-84
Identity = 223/663 (33.63%), Postives = 330/663 (49.77%), Query Frame = 0


Query: 2   ANATNNFPAATRMPNFNSPP-LNQLLN-------------QITTI----KIEGYLLGHKI 61
           A+++NN   A+++PN  +PP LNQ  +              ++TI    ++ GYL G  +
Sbjct: 24  ASSSNNTNQASQLPNAFAPPTLNQPFSLKLDRNNYTLWKTMVSTIVRGHRLHGYLSGTLM 83

Query: 62  CPPMFIRQNPSNASNETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLY 121
           CPP F                           V    T++ NPEYE W++ DQLL+GWLY
Sbjct: 84  CPPEF---------------------------VMVGDTQVTNPEYENWIITDQLLMGWLY 143

Query: 122 NSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLM 181
           +S+T  IAT++MG   + +L   ++ L+G  S+++ D  R   Q TRKG+  MSEYLR  
Sbjct: 144 SSMTEGIATEVMGSHSAANLQRNLESLYGAYSKSKMDDTRTLIQTTRKGSTLMSEYLRQK 203

Query: 182 KMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVATLQRKPDISW-------------- 241
           K  SN L  AG P P   L++ VL GLD  Y +IV  ++ + + +W              
Sbjct: 204 KNWSNMLALAGDPYPEAHLVANVLFGLDAEYLSIVVQIEARSNTTWQELQDLLLSFDSKI 263

Query: 242 -------LHHN---TQRHKIRVAAEINT--------------------LNVEAISVEIEV 301
                  L+ N   +   +  +AA+ N                      N    S     
Sbjct: 264 ERLQNLTLNSNKATSSSPQANMAAKTNNNGRGRGFQSQNASTNSGGLFSNSRGTSNRFRG 323

Query: 302 R-------AEEEIDPPAKYVERLVI-------------------QLMSATIASTKNLILI 361
           R       +        KY     +                   Q  +    +  +  + 
Sbjct: 324 RGRGPGSGSRPTCQVYGKYGHTAAVCYNRFDESYMGSDPNNPHNQNKAGQTNNNHSAFVA 383

Query: 362 SPKVKN---WYADSGATNHVTSDYTNLTHPTEYGGTKLVTVGNGNTLKIASVGNTVLT-- 421
           +P+V     W+ADSGA+NH+TSD  NLT   +Y G + V VGNG+ L+I  +GN  L   
Sbjct: 384 TPEVLEFDAWFADSGASNHITSDPANLTQKQDYNGKESVVVGNGSKLRITHIGNGKLNIE 443

Query: 422 NGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKD 481
           +G +LL LK++L VP IAKNLVSVSKLA DNNV +EF+ ++CLVKDK +++ +L G LKD
Sbjct: 444 SGNYLL-LKDMLLVPKIAKNLVSVSKLATDNNVLIEFYSNFCLVKDKVTKKVLLHGVLKD 503

Query: 482 GLYHLEET-TVASHDAVPVN-SAACPLKEAVNINKENESALSPSRISINSAVTKTTSHRR 541
            LY L+   T +SH     N  +A  +    N+N+    +L  S++ +         HRR
Sbjct: 504 ELYQLDSPFTKSSHPYQQSNFLSAFTISVDSNVNQSQTDSLLISQMDV--------GHRR 563

Query: 542 LGHSSSRIFYLITKGCNISFKSDATE-FCHACQLGKSHRLLFSSSESRALKAFELIHTDV 569
           LGH S ++   + +  N+S   +A +  C ACQ GK+H L F SS +RA    +LIHTD+
Sbjct: 564 LGHPSIKVLNHVLESVNVSVSKNAMKTVCDACQYGKAHALPFRSSNTRAKSVLDLIHTDL 623

[Close]

BLAST of Clc01G15865 vs. ExPASy TrEMBL
Match: A0A2K3MUJ9 (Putative retrotransposon Ty1-copia subclass protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g017679 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.3e-79
Identity = 218/621 (35.10%), Postives = 297/621 (47.83%), Query Frame = 0


Query: 3   NATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASNE 62
           N  N+ P+  + ++   N P    L L  I   K +GY+LG K CP  F+          
Sbjct: 7   NQKNDLPSTVSVKLDRDNFPLWKSLVLPLIRGCKYDGYMLGTKKCPDQFV---------- 66

Query: 63  TSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFER 122
           TSI                  TE INP+Y+ W   DQ LLGWL NS+T +IATQ++  E 
Sbjct: 67  TSI----------------DNTEKINPDYQDWQADDQALLGWLMNSMTVDIATQVLHCET 126

Query: 123 SKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPS 182
           SK LWD  Q L G  +R+   YL+  F  T K    M +YL  MK  ++ L  AGSP  S
Sbjct: 127 SKQLWDEAQSLAGAHTRSRIIYLKSEFHNTHKREMKMEQYLAKMKNLADKLKLAGSPISS 186

Query: 183 KALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEAISV 242
             L+ Q L GLD  YN +V  L  + +ISW+    Q      ++      N +N+ A S 
Sbjct: 187 SDLMIQTLNGLDSEYNPVVVKLSDQTNISWVDFQAQLLAFESRLDQLNNFNNINLNA-SA 246

Query: 243 EIEVRAE---------------------------EEIDPPA------------------K 302
               + E                               PP                   +
Sbjct: 247 NFASKNESGGNKFGSRGGWRGSNSRGMRGGRGRARMSKPPRPICQICGKFGHTAAQCYYR 306

Query: 303 YVERLVIQLMSATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGTK 362
           + +    +   A    + +  + SP   +   WY DSGA+NHVT     L    E  G  
Sbjct: 307 FDKSYTEKNHYAEGEGSHSAFVASPYHGQDYEWYFDSGASNHVTHQSGQLQDLNENNGKN 366

Query: 363 LVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFHE 422
            + VGNG  LKI + G+T L +    +NL+N+L+VP+I KNL+SVSKL  DNN  VEF E
Sbjct: 367 SLLVGNGEKLKILASGSTKLND----VNLRNVLYVPEITKNLLSVSKLTIDNNALVEFDE 426

Query: 423 DYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESAL 482
           +YC VKDK + + +LKG LKDGLY L     +++   P N   C                
Sbjct: 427 NYCYVKDKLTGKALLKGRLKDGLYQL-----SANKEPPTNKDPC---------------- 486

Query: 483 SPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRLL 542
             + IS+     K   HR+LGH ++++   + K  N+    SD   FC ACQ GK H L 
Sbjct: 487 --AYISL-----KEIWHRKLGHPNNKVLEKVLKDNNVKISPSDKFTFCEACQFGKLHLLP 546

Query: 543 FSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVAF 568
           F +S S A +  +LIHTDVWGP  +LS + F+YYV FLDDFSR+ WI+PL+ K +T+ AF
Sbjct: 547 FKTSSSHAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDFSRFTWIFPLKQKSETIHAF 568

[Close]

BLAST of Clc01G15865 vs. ExPASy TrEMBL
Match: A0A2K3NEN7 (Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.5e-79
Identity = 216/622 (34.73%), Postives = 302/622 (48.55%), Query Frame = 0


Query: 2   ANATNNFPA--ATRMPNFNSPPLNQL-LNQITTIKIEGYLLGHKICPPMFIRQNPSNASN 61
           +N  N+ P+  + ++   N P    L L  I   K +GY+LG K CP  F          
Sbjct: 7   SNKKNDLPSIISVKLDRDNYPLWKSLVLPLIRGCKFDGYILGTKECPEQF---------- 66

Query: 62  ETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFE 121
                      VT++D      ++ +NP+++ W+  DQ LLGWL NS+  +IATQL+  E
Sbjct: 67  -----------VTSAD-----KSKKVNPDFQDWMADDQALLGWLMNSMAIDIATQLLHCE 126

Query: 122 RSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGP 181
            SK LWD  Q L G  +++   YL+  F  TRKG   M EYL  MK  S+ L  +GSP  
Sbjct: 127 TSKQLWDEAQSLAGAHTKSRIIYLKSEFHNTRKGEMKMEEYLIKMKNLSDKLKLSGSPIS 186

Query: 182 SKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQRHKIRVAAEIN--------TLNV 241
           +  L+ Q L GLD  YN +V  L  + ++SW+  + Q   +   + ++        TLN 
Sbjct: 187 NSDLMIQTLNGLDAEYNPVVVKLSDQINLSWV--DVQAQLLAFESRLDQLNNFSGLTLNA 246

Query: 242 EA-ISVEIEVRAEE--------------------------------------EIDPPAKY 301
            A  + + E R  +                                       +D   ++
Sbjct: 247 SANFANKTEFRGNKFHSRGNWRRSNFRGMRGGRGKGRMSNTKCQVCSGTGHTAVDCSYRF 306

Query: 302 VERLVIQLMS--ATIASTKNLILISP---KVKNWYADSGATNHVTSDYTNLTHPTEYGGT 361
                 +  S  A    + +  + SP   +   WY DSGA+NHVT          E+ G 
Sbjct: 307 DRSYTGRNYSTEADKQGSHSAFVASPYHGQDYEWYFDSGASNHVTHQTDKFQGFNEHNGK 366

Query: 362 KLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKDNNVFVEFH 421
             + VGNG  LKI + G+T L    + LNL ++L+VP I KNL+SVSKL  DNN+FVEF 
Sbjct: 367 NSLMVGNGEKLKIVASGSTKL----NTLNLHDVLYVPQITKNLLSVSKLTADNNIFVEFD 426

Query: 422 EDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVNINKENESA 481
            + C VKDK + QT+LKG LKDGLY L + +  S                   NK+    
Sbjct: 427 ANCCSVKDKLTGQTLLKGRLKDGLYQLSDVSPQS-------------------NKDPCVY 486

Query: 482 LSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCHACQLGKSHRL 541
           +S           K + HR+LGH ++++   + K CN+    SD   FC ACQ GK H L
Sbjct: 487 MS----------VKESWHRKLGHPNNKVLEKVLKDCNVKISPSDQFSFCEACQFGKLHLL 546

Query: 542 LFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRLKGDTMVA 568
            F SS S   +   LIH+DVWGP  +LS +GF+YYV F+DDFSR+ WI+PL+ K DT+ A
Sbjct: 547 PFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDFSRFTWIFPLKQKSDTIHA 567

[Close]

BLAST of Clc01G15865 vs. ExPASy TrEMBL
Match: A0A2K3LCM1 (Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g032236 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.5e-78
Identity = 208/632 (32.91%), Postives = 301/632 (47.63%), Query Frame = 0


Query: 2   ANATNNFPA--ATRMPNFNSPP-LNQLLNQITTIKIEGYLLGHKICPPMFIRQNPSNASN 61
           +N  N+ P+  + ++   N P   + +L  I   +++GY+LG K CP  FI         
Sbjct: 7   SNHKNDLPSTVSVKLDRDNYPLWQSMVLPIIRGARLDGYMLGKKKCPEEFI--------- 66

Query: 62  ETSIAEASSSQVTTSDPVTFATTEIINPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFE 121
                       T +D     +++  NPE+E W   DQ LLGWL NS+T  IATQL+  E
Sbjct: 67  ------------TAAD-----SSKKFNPEFEDWQAYDQQLLGWLRNSMTVGIATQLLHCE 126

Query: 122 RSKDLWDAIQELFGVQSRAEEDYLRQTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGP 181
            S  LWD  Q L G  +R++  YL+  F  TRKG   M +YL  MK  ++ L  AG+P  
Sbjct: 127 TSMQLWDEAQSLAGAHTRSQITYLKSEFHSTRKGEMKMEDYLIKMKNLADKLKLAGNPIS 186

Query: 182 SKALISQVLLGLDENYNAIVATLQRKPDISWLHHNTQ----RHKIRVAAEINTLNVEA-- 241
           +  LI Q L GLD  YN +V  L  +  +SW+    Q     ++I     +  L + A  
Sbjct: 187 TSDLIIQTLNGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFENRIEQLNSLTNLTLNATA 246

Query: 242 --------------------------------------------------------ISVE 301
                                                                   I+++
Sbjct: 247 NVAKKSDHRGNRFNSNNNWRGSNNNWRGSNFRGWRGGRGRGRSFKTTCQVCGLDNHIAID 306

Query: 302 IEVRAEEEIDPPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADSGATNHVTSDYTN 361
              R ++                 +A +AS  ++     +  +WY DSGA+NHVT     
Sbjct: 307 CFYRFDKTYSRSNHSANNDKQGSHNAFLASQNSI-----EDYDWYFDSGASNHVTHQTDK 366

Query: 362 LTHPTEYGGTKLVTVGNGNTLKIASVGNTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLA 421
             + +E+ G   + VGNG  L+I + G++ L +    LNL +IL+VP I KNL+SVSKLA
Sbjct: 367 FQNLSEHHGKNSLIVGNGEKLEIVATGSSKLKS----LNLHDILYVPKITKNLLSVSKLA 426

Query: 422 KDNNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEA 481
            DNN+ VEF E+ C VKDK + + +L+G LKDGLY L E   +++ ++            
Sbjct: 427 ADNNILVEFDENCCFVKDKLTGKAILRGILKDGLYQLSEKDSSAYVSI------------ 486

Query: 482 VNINKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFK-SDATEFCH 541
                                  K + HR+LGH ++++  ++ K CN+    SD   FC 
Sbjct: 487 -----------------------KESWHRKLGHPNNKVLDIVLKSCNVKLSPSDQFSFCE 546

Query: 542 ACQLGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYP 568
           ACQ GK H L F +S S A +  EL+HTDVWGP  ++SS+GF+YYV F+DDF+R+ WIYP
Sbjct: 547 ACQYGKMHFLPFKTSFSHAKEILELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWIYP 568

[Close]

BLAST of Clc01G15865 vs. ExPASy TrEMBL
Match: A0A803PM38 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.5e-78
Identity = 187/509 (36.74%), Postives = 267/509 (52.46%), Query Frame = 0


Query: 84  INPEYEAWLVVDQLLLGWLYNSITPEIATQLMGFERSKDLWDAIQELFGVQSRAEEDYLR 143
           +NP +E W+V DQLLLGWLY S+T  IA ++MG + S  LW A++ELFG  S+A+ D  R
Sbjct: 103 VNPAFEQWIVNDQLLLGWLYGSMTEGIACEVMGCDSSASLWTALEELFGAHSKAKMDEYR 162

Query: 144 QTFQQTRKGNNTMSEYLRLMKMHSNNLGQAGSPGPSKALISQVLLGLDENYNAIVATLQR 203
              Q  RKG  +M++YLR  +  ++ L  AG P P   L+S VL GLD  Y  +V  ++ 
Sbjct: 163 TKIQTARKGALSMADYLRQKRQWADVLALAGEPYPENQLVSNVLSGLDIEYLPMVLLIEA 222

Query: 204 KPDISW-------LHHNTQRHKIRVAAEINTLNVEAISVEIEV----------RAEEEID 263
           +   +W       L  +++  ++   +  + L    ++    +          R     +
Sbjct: 223 RGSTTWQQLQDMLLSLDSKMERLHSFSGSSKLTGVPMNPSASLANKGPHPGANRGNHNNN 282

Query: 264 PPAKYVERLVIQLMSATIASTKNLILISPKVKNWYADS-------GATNHVTSDYTNLTH 323
               +         S       +    + +V   Y  S       GA+NH+TS+   +  
Sbjct: 283 NRGGHSNNRGSNNRSRGRGGRTSGPRPTCQVCGKYGHSAAHCYNRGASNHITSEINKMNL 342

Query: 324 PTEYGGTKLVTVGNGNTLKIASVG-NTVLTNGKHLLNLKNILHVPDIAKNLVSVSKLAKD 383
             EY G + VTV NGN L I  +G  ++ T     L LK ILHVP I KNL+S+SKL  D
Sbjct: 343 KEEYNGKEKVTVANGNRLPIHHIGLGSLQTLSASPLILKEILHVPSITKNLLSISKLTSD 402

Query: 384 NNVFVEFHEDYCLVKDKGSEQTVLKGTLKDGLYHLEETTVASHDAVPVNSAACPLKEAVN 443
           NNV VEF  D C VKDK + Q VLKG LKDGLY  +  T ++       S +CP   +  
Sbjct: 403 NNVCVEFLSDLCFVKDKETGQVVLKGKLKDGLYQFDAPT-STTSMSSNRSISCPTSFSGL 462

Query: 444 INKENESALSPSRISINSAVTKTTSHRRLGHSSSRIFYLITKGCNISFKSDATEFCHACQ 503
           +    ES ++    +      K   HRRLGH S R+   +    N+   + +  FC ACQ
Sbjct: 463 VVSAVESNVTKPMANQLLCSIKDRWHRRLGHPSIRVLDTVLHKINVKNINSSLSFCDACQ 522

Query: 504 LGKSHRLLFSSSESRALKAFELIHTDVWGPTSMLSSAGFRYYVLFLDDFSRYVWIYPLRL 563
           LGKSH L F  +  RA    EL+HTD+WGP+ ++S+  FRYY+ F+DDFSRY WIYPL+ 
Sbjct: 523 LGKSHSLPFKVNPKRATAPLELVHTDIWGPSPIMSNTNFRYYIHFIDDFSRYTWIYPLKA 582

Query: 564 KGDTMVAFEHFMQMMHTQFNSSIKAIQSD 568
           K + + AF  F  ++  QFNS +K +Q+D
Sbjct: 583 KSEALAAFVQFKLLVENQFNSRVKRVQTD 610

[Close]

BLAST of Clc01G15865 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.3e-06
Identity = 25/69 (36.23%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 444 HRRLGHSSSR-IFYLITKGCNISFKSDATEFCHACQLGKSHRLLFSSSESRALKAFELIH 503
           H RL H S R +  L+ KG   S K  + +FC  C  GK+HR+ FS+ +       + +H
Sbjct: 73  HSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVH 132

Query: 504 TDVWGPTSM 512
           +D+WG  S+
Sbjct: 133 SDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Clc01G15865 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX94503.1	2.7e-79	35.10	putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense...	[more]
PNY01489.1	1.8e-78	34.73	copia-like polyprotein, partial [Trifolium pratense]	[more]
PNX76291.1	5.1e-78	32.91	gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium praten...	[more]
PNX78574.1	8.7e-78	35.43	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense]	[more]
GAU19483.1	1.9e-77	34.35	hypothetical protein TSUD_77270 [Trifolium subterraneum]	[more]

BLAST of Clc01G15865 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.0e-44	26.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.4e-38	33.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.9e-22	27.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q07791	1.9e-11	26.09	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q12491	2.5e-11	26.09	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Clc01G15865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803PEH4	2.3e-84	33.63	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2K3MUJ9	1.3e-79	35.10	Putative retrotransposon Ty1-copia subclass protein (Fragment) OS=Trifolium prat...	[more]
A0A2K3NEN7	8.5e-79	34.73	Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786...	[more]
A0A2K3LCM1	2.5e-78	32.91	Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) OS=Trifolium prat...	[more]
A0A803PM38	2.5e-78	36.74	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Clc01G15865 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	3.3e-06	36.23	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 93..205 e-value: 3.5E-10 score: 39.8
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 273..365
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 75..197
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 75..197
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 273..365
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 489..578 e-value: 1.1E-11 score: 46.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 493..589 score: 9.226715
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 493..570

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G15865.1	Clc01G15865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding