Clc01G15570 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G15570
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr01: 28340307 .. 28341065 (+)
RNA-Seq ExpressionClc01G15570
SyntenyClc01G15570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTTGAGTTTTAATGGAAGAAGAATCGTCCAGTTCGCGTAATTCGGAGGAGGTATTGGATGCGGCGCAGCAGTTGATGCAGCTGAGCAACGACGACGACAATAGTAGCAATGTCGCCGTCGTCGTCCCAACGAAGAACAACAAGAACAATAACAAGAAAAAGATGAAAAAGGATCACGGTGGTGGCGGCGAGGAGGAGGTTGATCAAAAGAGATGCCAAATCGAGTCGTCAGTTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGATGAGAAAGATTGTTGTGATCATCATTCTATTATTTCTCGTCCTAAGAAGAGACGATTCCGATCCATTGAAAGCATATATATGAACACTAAACCCATCAATATTAACGGTAGATTCTCCGCAAATACCATCGTCGGGTGTTGGACACGAAGATGGTGGCAGTAGCGATGGCGATGGATCAACCCGCACCAGCATAATCCTATGGTTAAAGTACTATCACTACCCTTTGTTATGTTTTGAAATTTTTTAACTCATTGAATTATGTTCGTGTGGAAAATTATAAACTATATATATATATATATATTGTTAATTTTGAATATGAAAGCTTGGAAATTAGTGGTAGAATTGTACATTTTGCCTTCCTGCTTCTTCCTATGCAATGTCATTGGAAGTCGAAAAGAGATGAAAATTATAGTGAATGAATTTAAACTTTATGCTTTTTATTTCAATTATCAATCTTTGCATTTCATTCTTGCCTATTTAATAT

mRNA sequence

TTTTTTTTTGAGTTTTAATGGAAGAAGAATCGTCCAGTTCGCGTAATTCGGAGGAGGTATTGGATGCGGCGCAGCAGTTGATGCAGCTGAGCAACGACGACGACAATAGTAGCAATGTCGCCGTCGTCGTCCCAACGAAGAACAACAAGAACAATAACAAGAAAAAGATGAAAAAGGATCACGGTGGTGGCGGCGAGGAGGAGGTTGATCAAAAGAGATGCCAAATCGAGTCGTCAGTTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGATGAGAAAGATTGTTGTGATCATCATTCTATTATTTCTCGTCCTAAGAAGAGACGATTCCGATCCATTGAAAGCATATATATGAACACTAAACCCATCAATATTAACGGTAGATTCTCCGCAAATACCATCGTCGGGTGTTGGACACGAAGATGGTGGCAGTAGCGATGGCGATGGATCAACCCGCACCAGCATAATCCTATGGTTAAAGTACTATCACTACCCTTTGTTATGTTTTGAAATTTTTTAACTCATTGAATTATGTTCGTGTGGAAAATTATAAACTATATATATATATATATATTGTTAATTTTGAATATGAAAGCTTGGAAATTAGTGGTAGAATTGTACATTTTGCCTTCCTGCTTCTTCCTATGCAATGTCATTGGAAGTCGAAAAGAGATGAAAATTATAGTGAATGAATTTAAACTTTATGCTTTTTATTTCAATTATCAATCTTTGCATTTCATTCTTGCCTATTTAATAT

Coding sequence (CDS)

ATGGAAGAAGAATCGTCCAGTTCGCGTAATTCGGAGGAGGTATTGGATGCGGCGCAGCAGTTGATGCAGCTGAGCAACGACGACGACAATAGTAGCAATGTCGCCGTCGTCGTCCCAACGAAGAACAACAAGAACAATAACAAGAAAAAGATGAAAAAGGATCACGGTGGTGGCGGCGAGGAGGAGGTTGATCAAAAGAGATGCCAAATCGAGTCGTCAGTTTGGTTGAAAATTGAAGAGATTTTTGGGAAAGATGATGAGAAAGATTGTTGTGATCATCATTCTATTATTTCTCGTCCTAAGAAGAGACGATTCCGATCCATTGAAAGCATATATATGAACACTAAACCCATCAATATTAACGGTAGATTCTCCGCAAATACCATCGTCGGGTGTTGGACACGAAGATGGTGGCAGTAG

Protein sequence

MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGGEEEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHHSIISRPKKRRFRSIESIYMNTKPININGRFSANTIVGCWTRRWWQ
Homology
BLAST of Clc01G15570 vs. NCBI nr
Match: KAA0025567.1 (hypothetical protein E6C27_scaffold253G00560 [Cucumis melo var. makuwa] >TYK12441.1 hypothetical protein E5676_scaffold255G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-38
Identity = 104/136 (76.47%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKD--HGGG 60
           MEEESSSSRNSEEVL AAQQLMQLSN DDNSSNV VVV  K NK       KKD   GGG
Sbjct: 1   MEEESSSSRNSEEVLGAAQQLMQLSN-DDNSSNVDVVVAAKKNK-------KKDCCGGGG 60

Query: 61  GEEEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHH--SII-SRPKKRRFRSIESIYMNT 120
            EEEVDQKRCQIESS+WLKIEEIFGK DE  CCDHH  SII SRPKKRRFRSI+SIYM T
Sbjct: 61  REEEVDQKRCQIESSIWLKIEEIFGK-DEGGCCDHHHSSIINSRPKKRRFRSIQSIYMKT 120

Query: 121 KPININGRFSANTIVG 132
           KP+  NGRFS  T+VG
Sbjct: 121 KPMITNGRFSTKTMVG 127

BLAST of Clc01G15570 vs. NCBI nr
Match: XP_031742655.1 (uncharacterized protein LOC116404425 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 104/137 (75.91%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGG- 60
           MEEESSSS NSEEVL AAQQLMQLSN DDNSSNV VVV     K N KK    D GGGG 
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSN-DDNSSNVDVVV--AEAKKNKKKDFGGDGGGGGG 60

Query: 61  --EEEVDQKRCQIESSVWLKIEEIFGKDDEKD-CCDHHSII--SRPKKRRFRSIESIYMN 120
             EEEVDQKRCQIESSVWLKIEEIFGKD+E D CC HHS I  SRPKKRRFRSI+SIYM 
Sbjct: 61  CREEEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQSIYMK 120

Query: 121 TKPININGRFSANTIVG 132
           TKPI  NGRFS  T+VG
Sbjct: 121 TKPIT-NGRFSTKTMVG 133

BLAST of Clc01G15570 vs. NCBI nr
Match: XP_022133223.1 (uncharacterized protein LOC111005872 [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-30
Identity = 88/132 (66.67%), Postives = 99/132 (75.00%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGGE 60
           MEEESS SRN EEVL AAQQLMQLSN+DD+SSNV      KNNK       K+  G GGE
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKKNNK-------KRGGGDGGE 60

Query: 61  EEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHHSIISRPKKR--RFRSIESIYMNTKPI 120
           EEVDQKRCQIE+S+W KIEEIFGK++E+   D +S I RPKKR  RFRSI+SIYM TKPI
Sbjct: 61  EEVDQKRCQIEASIWSKIEEIFGKEEEELEEDRNS-ICRPKKRRSRFRSIQSIYMTTKPI 120

Query: 121 NINGRFSANTIV 131
            IN RFS N I+
Sbjct: 121 -INARFSGNRII 123

BLAST of Clc01G15570 vs. NCBI nr
Match: KAG6595108.1 (hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-28
Identity = 88/133 (66.17%), Postives = 100/133 (75.19%), Query Frame = 0

Query: 1   MEEESSS-SRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGG 60
           MEEESSS SRNSEEVLDAAQQL+QLSN+DD+SSN   VV  +N K     K K+D GG G
Sbjct: 1   MEEESSSCSRNSEEVLDAAQQLVQLSNEDDSSSN---VVTAENKKKKKIMKKKEDGGGDG 60

Query: 61  --EEEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHHSIISRPKKRRFRSIESIYMNTKP 120
             EEEVDQKRCQIE+S+  KIEEIFGKDD+ D  +    I RP KRRFRSI+SIYMNTKP
Sbjct: 61  GEEEEVDQKRCQIETSICSKIEEIFGKDDDDD-EEGCGSICRPNKRRFRSIQSIYMNTKP 120

Query: 121 ININGRFSANTIV 131
           + +N RFS   IV
Sbjct: 121 L-VNARFSGKGIV 128

BLAST of Clc01G15570 vs. NCBI nr
Match: KGN48398.1 (hypothetical protein Csa_004350 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.3e-28
Identity = 88/115 (76.52%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGG- 60
           MEEESSSS NSEEVL AAQQLMQLSN DDNSSNV VVV     K N KK    D GGGG 
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSN-DDNSSNVDVVV--AEAKKNKKKDFGGDGGGGGG 60

Query: 61  --EEEVDQKRCQIESSVWLKIEEIFGKDDEKD-CCDHHSII--SRPKKRRFRSIE 110
             EEEVDQKRCQIESSVWLKIEEIFGKD+E D CC HHS I  SRPKKRRFRSI+
Sbjct: 61  CREEEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQ 112

BLAST of Clc01G15570 vs. ExPASy TrEMBL
Match: A0A5A7SLI9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00160 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 104/136 (76.47%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKD--HGGG 60
           MEEESSSSRNSEEVL AAQQLMQLSN DDNSSNV VVV  K NK       KKD   GGG
Sbjct: 1   MEEESSSSRNSEEVLGAAQQLMQLSN-DDNSSNVDVVVAAKKNK-------KKDCCGGGG 60

Query: 61  GEEEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHH--SII-SRPKKRRFRSIESIYMNT 120
            EEEVDQKRCQIESS+WLKIEEIFGK DE  CCDHH  SII SRPKKRRFRSI+SIYM T
Sbjct: 61  REEEVDQKRCQIESSIWLKIEEIFGK-DEGGCCDHHHSSIINSRPKKRRFRSIQSIYMKT 120

Query: 121 KPININGRFSANTIVG 132
           KP+  NGRFS  T+VG
Sbjct: 121 KPMITNGRFSTKTMVG 127

BLAST of Clc01G15570 vs. ExPASy TrEMBL
Match: A0A6J1BYI0 (uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005872 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.7e-31
Identity = 88/132 (66.67%), Postives = 99/132 (75.00%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGGE 60
           MEEESS SRN EEVL AAQQLMQLSN+DD+SSNV      KNNK       K+  G GGE
Sbjct: 1   MEEESSCSRNMEEVLGAAQQLMQLSNEDDSSSNVVTAEKKKNNK-------KRGGGDGGE 60

Query: 61  EEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHHSIISRPKKR--RFRSIESIYMNTKPI 120
           EEVDQKRCQIE+S+W KIEEIFGK++E+   D +S I RPKKR  RFRSI+SIYM TKPI
Sbjct: 61  EEVDQKRCQIEASIWSKIEEIFGKEEEELEEDRNS-ICRPKKRRSRFRSIQSIYMTTKPI 120

Query: 121 NINGRFSANTIV 131
            IN RFS N I+
Sbjct: 121 -INARFSGNRII 123

BLAST of Clc01G15570 vs. ExPASy TrEMBL
Match: A0A0A0KFU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 88/115 (76.52%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 1   MEEESSSSRNSEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGG- 60
           MEEESSSS NSEEVL AAQQLMQLSN DDNSSNV VVV     K N KK    D GGGG 
Sbjct: 1   MEEESSSSPNSEEVLGAAQQLMQLSN-DDNSSNVDVVV--AEAKKNKKKDFGGDGGGGGG 60

Query: 61  --EEEVDQKRCQIESSVWLKIEEIFGKDDEKD-CCDHHSII--SRPKKRRFRSIE 110
             EEEVDQKRCQIESSVWLKIEEIFGKD+E D CC HHS I  SRPKKRRFRSI+
Sbjct: 61  CREEEVDQKRCQIESSVWLKIEEIFGKDNEGDHCCHHHSSIINSRPKKRRFRSIQ 112

BLAST of Clc01G15570 vs. ExPASy TrEMBL
Match: A0A6J1GFL5 (uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC111453726 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 81/127 (63.78%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 10  NSEEVLDAAQQLMQLS----NDDDN-SSNVAVVVPTKNNKNNNKKKMKKDHG-----GGG 69
           +SEEVL AAQ LMQLS    +DDDN SSNV V V    N     KK+KK HG     GG 
Sbjct: 5   SSEEVLVAAQLLMQLSIEDDDDDDNCSSNVVVAVEKMKN-----KKLKKGHGGDRGDGGE 64

Query: 70  EEEVDQKRCQIESSVWLKIEEIFGKDDEKDCCDHHSIISRPKKRRFRSIESIYMNTKPIN 127
           EEEVDQKR QIE+S+WLKIEEIFGKDDE+   D +S I RPKKRRFRS++SIY+ TKPI 
Sbjct: 65  EEEVDQKRYQIETSIWLKIEEIFGKDDEEQ--DFNS-ICRPKKRRFRSLQSIYVTTKPIG 122

BLAST of Clc01G15570 vs. ExPASy TrEMBL
Match: A0A6J5V3C5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38002 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 0

Query: 11  SEEVLDAAQQLMQLSNDDDNSSNVAVVVPTKNNKNNNKKKMKKDHGGGGEEEVDQKRCQI 70
           +E  L AAQQLMQLS D+DN++N +    +++NKN         H G   EEVDQ R  I
Sbjct: 16  TESELAAAQQLMQLS-DEDNNNNSSSSSSSRSNKNTK-------HEG---EEVDQ-RPLI 75

Query: 71  ESSVWLKIEEIFGKDDEKDCCDHHSIISRPKKRRFRSIESIYMNTKPIN 120
              +W KIEEIFGK+++ D         RPKKRR+RS+ SIY+ +KP+N
Sbjct: 76  NVIIWAKIEEIFGKEEDVD---------RPKKRRYRSLASIYLTSKPVN 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025567.14.6e-3876.47hypothetical protein E6C27_scaffold253G00560 [Cucumis melo var. makuwa] >TYK1244... [more]
XP_031742655.11.1e-3675.91uncharacterized protein LOC116404425 [Cucumis sativus][more]
XP_022133223.11.6e-3066.67uncharacterized protein LOC111005872 [Momordica charantia][more]
KAG6595108.13.3e-2866.17hypothetical protein SDJN03_11661, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN48398.14.3e-2876.52hypothetical protein Csa_004350 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SLI92.2e-3876.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1BYI07.7e-3166.67uncharacterized protein LOC111005872 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0KFU12.1e-2876.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486710 PE=4 SV=1[more]
A0A6J1GFL52.0e-2363.78uncharacterized protein LOC111453726 OS=Cucurbita moschata OX=3662 GN=LOC1114537... [more]
A0A6J5V3C51.3e-0946.79Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS38002 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G15570.1Clc01G15570.1mRNA