Clc01G15070 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G15070
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionIron-sulfur binding oxidoreductase
LocationClcChr01: 27801340 .. 27802035 (+)
RNA-Seq ExpressionClc01G15070
SyntenyClc01G15070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAGGATAGGTAAATTAGAATTAGCATATAGGAATAACATTCAAATAAAAATATGGTTGATTTGGGAAGTTGATGGAAGTTGAAGGATAAAGGAGGTAGGAGTAGTAGTGGTAGTATATATATATAAAGGTGAAAGTAGCAGATCAGAATTGGTCGAAAGCAAAGTAAGTAGAAGCATTAGAAAGGCTAAGGCTATCCATCCACAAAAGGTGAATAATTAAGATGAAGATGACGTTGGGAGCAATTGTAGGTGTGTTGAATGTGGGTAGACAAATATCAGATGGTATCCACGGAATTTTCCAACCCATTGAAGATCTTGGGGACACAATTATACAGCAAATTGTAAAATTCGTGTTGGAAGTGATGGCGGCGGAGTCAGGGCTTGAGGTGAAGCTGGATGCTGTGTTGAGTGCTCAGCTTAGGGTATTGCCCAACGGCAAATTCTACCAGATTACACTGGCGCTTAATGTCAAAGTCAACAATGCGTGGATTACTCAAAAATATGTATTTGAAGTCTTTATCCCATTTATTGGCCATTGGGATTGCAAATCCTACATGTTGATAAACTAAACTAAATCCCCACTATTCTACTATTCCTCATTCCAACACACTTTCTCTCGAACTTCTTTTTCTATATCTGTGAGCATTTAGGTGTCAAGAAAACTTATATGATATTAAATTTAGTTTCTTGTCA

mRNA sequence

AAGGAGGATAGGTAAATTAGAATTAGCATATAGGAATAACATTCAAATAAAAATATGGTTGATTTGGGAAGTTGATGGAAGTTGAAGGATAAAGGAGGTAGGAGTAGTAGTGGTAGTATATATATATAAAGGTGAAAGTAGCAGATCAGAATTGGTCGAAAGCAAAGTAAGTAGAAGCATTAGAAAGGCTAAGGCTATCCATCCACAAAAGGTGAATAATTAAGATGAAGATGACGTTGGGAGCAATTGTAGGTGTGTTGAATGTGGGTAGACAAATATCAGATGGTATCCACGGAATTTTCCAACCCATTGAAGATCTTGGGGACACAATTATACAGCAAATTGTAAAATTCGTGTTGGAAGTGATGGCGGCGGAGTCAGGGCTTGAGGTGAAGCTGGATGCTGTGTTGAGTGCTCAGCTTAGGGTATTGCCCAACGGCAAATTCTACCAGATTACACTGGCGCTTAATGTCAAAGTCAACAATGCGTGGATTACTCAAAAATATGTATTTGAAGTCTTTATCCCATTTATTGGCCATTGGGATTGCAAATCCTACATGTTGATAAACTAAACTAAATCCCCACTATTCTACTATTCCTCATTCCAACACACTTTCTCTCGAACTTCTTTTTCTATATCTGTGAGCATTTAGGTGTCAAGAAAACTTATATGATATTAAATTTAGTTTCTTGTCA

Coding sequence (CDS)

ATGAAGATGACGTTGGGAGCAATTGTAGGTGTGTTGAATGTGGGTAGACAAATATCAGATGGTATCCACGGAATTTTCCAACCCATTGAAGATCTTGGGGACACAATTATACAGCAAATTGTAAAATTCGTGTTGGAAGTGATGGCGGCGGAGTCAGGGCTTGAGGTGAAGCTGGATGCTGTGTTGAGTGCTCAGCTTAGGGTATTGCCCAACGGCAAATTCTACCAGATTACACTGGCGCTTAATGTCAAAGTCAACAATGCGTGGATTACTCAAAAATATGTATTTGAAGTCTTTATCCCATTTATTGGCCATTGGGATTGCAAATCCTACATGTTGATAAACTAA

Protein sequence

MKMTLGAIVGVLNVGRQISDGIHGIFQPIEDLGDTIIQQIVKFVLEVMAAESGLEVKLDAVLSAQLRVLPNGKFYQITLALNVKVNNAWITQKYVFEVFIPFIGHWDCKSYMLIN
Homology
[Close]
BLAST of Clc01G15070 vs. NCBI nr
Match: KAA0025184.1 (Iron-sulfur binding oxidoreductase [Cucumis melo var. makuwa] >TYK07479.1 Iron-sulfur binding oxidoreductase [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = 0 

Query: 1   MKMTLGAIVGVLNVGRQISDGIHGIFQPIEDLG-DTIIQQIVKFVLEVMAAESGLEVKLD 60
           M    G  VG  + GR       G F+ I +   D ++ QI  + L V+AA+  +E+KL 
Sbjct: 1   MSSDFGEHVGE-HAGRTYQFRSGGAFRAINNCATDKVVVQIATWTLTVIAAKHQIELKLR 60

Query: 61  AVLSAQLRVLPNGKFYQITLALNVKVNNAWITQKYVFEVFIPFIGHWDCKSYMLIN 116
            V+SA + +   GK Y++T+  + K N+ W+   Y  EV++P +G W+ +S+ L N
Sbjct: 61  LVVSAAIALFTKGKLYRLTIQADAKTNSGWVVHTYDVEVWLPLVGPWEVRSHKLSN 115

[Close]
BLAST of Clc01G15070 vs. NCBI nr
Match: KAE8645929.1 (hypothetical protein Csa_021384 [Cucumis sativus] >KGN48306.1 hypothetical protein Csa_002744 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 1   MKMTLGAIVGVLNVGRQISDGIHGIFQPIEDLG-DTIIQQIVKFVLEVMAAESGLEVKLD 60
           M    G  VG  + GR+      G F+ I++   D ++ +I  + L V++ +  +E+KL 
Sbjct: 1   MSSDFGEHVGE-HAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLR 60

Query: 61  AVLSAQLRVLPNGKFYQITLALNVKVNNAWITQKYVFEVFIPFIGHWDCKSYML 114
           AV++A + +   GK Y+  + ++ K N     Q Y  EV+IP +G W+ +S+ L
Sbjct: 61  AVVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRL 113

[Close]
BLAST of Clc01G15070 vs. ExPASy TrEMBL
Match: A0A5A7SHS8 (Iron-sulfur binding oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G002130 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.9e-09
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = 0 

Query: 1   MKMTLGAIVGVLNVGRQISDGIHGIFQPIEDLG-DTIIQQIVKFVLEVMAAESGLEVKLD 60
           M    G  VG  + GR       G F+ I +   D ++ QI  + L V+AA+  +E+KL 
Sbjct: 1   MSSDFGEHVGE-HAGRTYQFRSGGAFRAINNCATDKVVVQIATWTLTVIAAKHQIELKLR 60

Query: 61  AVLSAQLRVLPNGKFYQITLALNVKVNNAWITQKYVFEVFIPFIGHWDCKSYMLIN 116
            V+SA + +   GK Y++T+  + K N+ W+   Y  EV++P +G W+ +S+ L N
Sbjct: 61  LVVSAAIALFTKGKLYRLTIQADAKTNSGWVVHTYDVEVWLPLVGPWEVRSHKLSN 115

[Close]
BLAST of Clc01G15070 vs. ExPASy TrEMBL
Match: A0A0A0KKM6 (Iron-sulfur binding oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_6G465000 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 0 

Query: 1   MKMTLGAIVGVLNVGRQISDGIHGIFQPIEDLG-DTIIQQIVKFVLEVMAAESGLEVKLD 60
           M    G  VG  + GR+      G F+ I++   D ++ +I  + L V++ +  +E+KL 
Sbjct: 1   MSSDFGEHVGE-HAGRKYQFRSGGAFRSIDNCAKDRVVVEIATWSLTVVSEKLQVELKLR 60

Query: 61  AVLSAQLRVLPNGKFYQITLALNVKVNNAWITQKYVFEVFIPFIGHWDCKSYML 114
           AV++A + +   GK Y+  + ++ K N     Q Y  EV+IP +G W+ +S+ L
Sbjct: 61  AVVAAAIALFTKGKLYRFKIQVDAKTNCGSSVQTYDVEVWIPLVGKWEVRSHRL 113

The following BLAST results are available for this feature:
BLAST of Clc01G15070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025184.11.4e-0832.76Iron-sulfur binding oxidoreductase [Cucumis melo var. makuwa] >TYK07479.1 Iron-s... [more]
KAE8645929.11.2e-0429.82hypothetical protein Csa_021384 [Cucumis sativus] >KGN48306.1 hypothetical prote... [more]
BLAST of Clc01G15070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G15070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SHS86.9e-0932.76Iron-sulfur binding oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0KKM66.0e-0529.82Iron-sulfur binding oxidoreductase OS=Cucumis sativus OX=3659 GN=Csa_6G465000 PE... [more]
BLAST of Clc01G15070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G15070.1Clc01G15070.1mRNA