Clc01G14750 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G14750
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	transcription termination factor MTEF1, chloroplastic
Location	ClcChr01: 27560642 .. 27563698 (-)
RNA-Seq Expression	Clc01G14750
Synteny	Clc01G14750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCGTCTCTTACATTATTTCGGATTTTTTGAAGATAGCACTTATCCTCTACGATTCCCTTCCTCACCACTTCCTGGATTCCCTCCGTAAAACCCCACAAGCTCCCCATTAACCATGCAATGGCGGATTCATCTCTTCACCTCCTCTCCAATGGCGGATTCATCCACCATTCTTCTCCTTCCCCTCTTTTCCCCTCTCTTCCTCGCTCCAGAACCCTCCAATTCCCTGTCCTCTCCAATTCCAGAATCTCTTTCGTCCTCCCCTCCAAACTCCCCCCCTCGCAACCCCAGCATTCCTCCCCTCTCCCCCCCGCTCCCCCCTCCTCCGCCACACAACGACCACCACTCCGAATTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCCTCTCCGTCATCAAAGACCACCCTCCCGTCGCCTCCGCCTCCCTTCCCGACATCAGATCAGCCGTTGATTTCATGACCTCCATGAATTTCACCGCCCTCGAGTTCCGTCGAATCGTCGGTATGTGCCCCGAGATTCTCACCTCTCGCGCTTCCGACCTCATCCCTATCTTCACCTTCCTCCTCCGCGAAGCTCGAGTCGACGGCGCCGATATCAAACGCGTTATCAATCGACGCCCTAGATTGCTCGCGTGCAGCGTAAAAGATCGACTCCGTCCAACTCTCTACTTCCTGCAAAGCATCGGCATATCCGAGGTACATAAACACACTTCCTTACTCTCCTGTAGCGTGGAAGAGAAACTGATTCCGAGAATCGAGTTCTTCGAAAACCTAGGGTTTTCTCGGCGGGATGCTTTGATAATGTTCCGGCGATTCCCGCAGCTGTTCTGCTATAGCATAAAGGAGAATCTGGAGCCGAAACTGAATTACTTTGTGGTGGAAATGGGGAGAGAATTGAAGGAATTGAAGGAATTTCCTCATTACTTTTCGTTTAGCTTAGAGAACAGGATCAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTTTGTTTTCCATTGCCGGAGTTGTTGAAAACCAGTGAGATGAAATTCCGGGAGAAATTAGAGGTATGTTGTGATTCTTCAATACCCTTTAGAAACTTCTCCTTTGTGGTGTACAAAATTGTGATATTCAAATTTCTCAATCAAGTATAGAGTTCATTTTCCATAGCTCTGCTTCTGTTTCTCTCTTCATTTTTGTGCTTTGAATTTCAATTCTGCTCTAATTATCCCTTTGGGTCCTTACAGTTAGATTAAAGGTTTAGTATAAGTTTTGGGCTGATTATCCCATATGAATTTATGTTCTAATCCATATATTTTCTTCTTTAGTTGGGGGAAGAATCCGATCTTCTTTAAACACAATATTTTTGAATTTGTTGAGGTTAGACTTTAGAGGTAGAGTTCCTTAGTTTTTTTTAGTATAGTTTCCATCTAGTCTTTTTTTTTATTTATTTATTATTTTTTATTTTTAGTTTAATTAGTTTAATTTTCATTTAGTGAAAGTTTTAAAATATTATGTTTTTATTTTTTAATTTAGTTCCATATGGTTTCAAATTTTCAAATTTTCAAATTTTCAAAATTATTTAAAATTCTATTTATGAGTTTTCACTACGGCTTTTTTTTTTTTATGTTAATTTGTAGTTAATTAATTTAAAATAATGTCAAAATTTTTAATTAATTTTAATAGGAATGGAAATGAGCGTAAACTAATTTAATTTTTTAAATTAACTCATAGATTAACACAATAAAGATAAATCTTGAAAGATAGAAACCAAATGAAAGCAAATTTCAAAATTCAAGGGTTAAAATGTAACTATACCTTTTTTGGGAGGTGTTTAAAGCACTAATTTGAAGATGGTGGAGTGGTTTATTATAATTCAATCTATGTTTTTACAACTATTTATAACCTGCAATTAAACATTGTAAATACTAGCACAATTGTTTTAAATGATAAAACTGTTGGAAATATTTACAAATATAATAAAATGTCACTATCTATGAGTGATAGACAACGATAGACACTAATAGACATTTATTAATATCTATCACTAATAGATAATAATAAATGGTAGTAGTCTATCAGTGTCTATCGTGATAAGACATGATATTTTGCTATATTTGTAAATATTTTGACTTATTGTGCTATATTTGAAAACAATCATAAATACTATTTCAAAGCCTTCTTTGTTATAATATTTACTATTACCCACTAATTCTCTCTCTCTTTTTTCTTTGCAATAGTTTGCCACTCAAACTCAGACTATTATAACCTCATGCCTTAAACGCAAACTATTATAACTCATCAAACTATAATATTCACTGACTACTCTTAACGCCACTTAAAACGTGGAATAAATTGAGGTTGTTTTAGGAGTGTTTCTTTTTTTTTAAAACGTGGTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTAAGCAGCAGTGGGAGTGGGAGTGAGTAGAGTAGTGGTATAATTAAATGAGGAAAAATGATAGTTCAAGCTTTGATTGAAGAAGTATTTAGCATCTTGGATTGGAACAAGCAGAGGCCTCCAATTTTCTTACGTTATATATGTTAGTTACTCAACCTCTCTTGACTTGGGTCTCTGAGATGAGAATCTTGTTTTGCTGCTTTCCTCTGTAAACCGATTTTTTAAATTGTCATGTACCTTTCCTCTCCGACTTGAAAGTTCAAATTTTTATTTGTACTAAAAAAAATTGTAAACAAATTTAAATGATTTAGCCCACGTTGTTCAGGGACCGCAGGATATTTTTGTGCAAATCCAAGTATTGTATACCGTGATGTATAGCTTGTTTAGGTATGTTTCTGTTTCTTGTTTTGTATTTATGAAAATGTAACTTTTTGGGGGTAAAATTCTTCATTCCTTATGCATAAAAGTTTAAGGAAGTCACTTTGCTAATGAAAAGCTAGCAATCAGGTAGGTGATTTATTTATTAAATAAACAGTTATATTAGTTTACGTTTCGTTTAGTAATTATTTGATTTTTTGTTTTTTAAAATTATGTCTATAGAGACTACTTCCATCTTTAATTTTCTTCTTATGTTATCT

mRNA sequence

TTTGCGTCTCTTACATTATTTCGGATTTTTTGAAGATAGCACTTATCCTCTACGATTCCCTTCCTCACCACTTCCTGGATTCCCTCCGTAAAACCCCACAAGCTCCCCATTAACCATGCAATGGCGGATTCATCTCTTCACCTCCTCTCCAATGGCGGATTCATCCACCATTCTTCTCCTTCCCCTCTTTTCCCCTCTCTTCCTCGCTCCAGAACCCTCCAATTCCCTGTCCTCTCCAATTCCAGAATCTCTTTCGTCCTCCCCTCCAAACTCCCCCCCTCGCAACCCCAGCATTCCTCCCCTCTCCCCCCCGCTCCCCCCTCCTCCGCCACACAACGACCACCACTCCGAATTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCCTCTCCGTCATCAAAGACCACCCTCCCGTCGCCTCCGCCTCCCTTCCCGACATCAGATCAGCCGTTGATTTCATGACCTCCATGAATTTCACCGCCCTCGAGTTCCGTCGAATCGTCGGTATGTGCCCCGAGATTCTCACCTCTCGCGCTTCCGACCTCATCCCTATCTTCACCTTCCTCCTCCGCGAAGCTCGAGTCGACGGCGCCGATATCAAACGCGTTATCAATCGACGCCCTAGATTGCTCGCGTGCAGCGTAAAAGATCGACTCCGTCCAACTCTCTACTTCCTGCAAAGCATCGGCATATCCGAGCTGTTCTGCTATAGCATAAAGGAGAATCTGGAGCCGAAACTGAATTACTTTGTGGTGGAAATGGGGAGAGAATTGAAGGAATTGAAGGAATTTCCTCATTACTTTTCGTTTAGCTTAGAGAACAGGATCAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTTTGTTTTCCATTGCCGGAGTTGTTGAAAACCAGTGAGATGAAATTCCGGGAGAAATTAGAGCAGTGGGAGTGGGAGTGAGTAGAGTAGTGGTATAATTAAATGAGGAAAAATGATAGTTCAAGCTTTGATTGAAGAAGTATTTAGCATCTTGGATTGGAACAAGCAGAGGCCTCCAATTTTCTTACGTTATATATGTTAGTTACTCAACCTCTCTTGACTTGGGTCTCTGAGATGAGAATCTTGTTTTGCTGCTTTCCTCTGTAAACCGATTTTTTAAATTGTCATGTACCTTTCCTCTCCGACTTGAAAGTTCAAATTTTTATTTGTACTAAAAAAAATTGTAAACAAATTTAAATGATTTAGCCCACGTTGTTCAGGGACCGCAGGATATTTTTGTGCAAATCCAAGTATTGTATACCGTGATGTATAGCTTGTTTAGGTATGTTTCTGTTTCTTGTTTTGTATTTATGAAAATGTAACTTTTTGGGGGTAAAATTCTTCATTCCTTATGCATAAAAGTTTAAGGAAGTCACTTTGCTAATGAAAAGCTAGCAATCAGGTAGGTGATTTATTTATTAAATAAACAGTTATATTAGTTTACGTTTCGTTTAGTAATTATTTGATTTTTTGTTTTTTAAAATTATGTCTATAGAGACTACTTCCATCTTTAATTTTCTTCTTATGTTATCT

Coding sequence (CDS)

ATGCAATGGCGGATTCATCTCTTCACCTCCTCTCCAATGGCGGATTCATCCACCATTCTTCTCCTTCCCCTCTTTTCCCCTCTCTTCCTCGCTCCAGAACCCTCCAATTCCCTGTCCTCTCCAATTCCAGAATCTCTTTCGTCCTCCCCTCCAAACTCCCCCCCTCGCAACCCCAGCATTCCTCCCCTCTCCCCCCCGCTCCCCCCTCCTCCGCCACACAACGACCACCACTCCGAATTTCAGGAGAAAATGCTCTTCCTCGACTCCATCGGCATCGACTTCCTCTCCGTCATCAAAGACCACCCTCCCGTCGCCTCCGCCTCCCTTCCCGACATCAGATCAGCCGTTGATTTCATGACCTCCATGAATTTCACCGCCCTCGAGTTCCGTCGAATCGTCGGTATGTGCCCCGAGATTCTCACCTCTCGCGCTTCCGACCTCATCCCTATCTTCACCTTCCTCCTCCGCGAAGCTCGAGTCGACGGCGCCGATATCAAACGCGTTATCAATCGACGCCCTAGATTGCTCGCGTGCAGCGTAAAAGATCGACTCCGTCCAACTCTCTACTTCCTGCAAAGCATCGGCATATCCGAGCTGTTCTGCTATAGCATAAAGGAGAATCTGGAGCCGAAACTGAATTACTTTGTGGTGGAAATGGGGAGAGAATTGAAGGAATTGAAGGAATTTCCTCATTACTTTTCGTTTAGCTTAGAGAACAGGATCAAGCCGAGACATCAAAGCTGTGTGGAGAAGGGAGTTTGTTTTCCATTGCCGGAGTTGTTGAAAACCAGTGAGATGAAATTCCGGGAGAAATTAGAGCAGTGGGAGTGGGAGTGA

Protein sequence

MQWRIHLFTSSPMADSSTILLLPLFSPLFLAPEPSNSLSSPIPESLSSSPPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTSRASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISELFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQWEWE

Homology

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BLAST of Clc01G14750 vs. NCBI nr
Match: XP_038883667.1 (transcription termination factor MTEF1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 419.5 bits (1077), Expect = 2.3e-113
Identity = 235/322 (72.98%), Postives = 246/322 (76.40%), Query Frame = 0


Query: 13  MADSSTILLL--------PLFSPLFLAPEPSNSLSSPIPESLSSS------PPNSPPRNP 72
           MADSS++ LL           SPLF +   S +L  P+   LS+S      P   PPRNP
Sbjct: 1   MADSSSLHLLSNGGFIHHSSPSPLFPSLPRSRTLHFPV---LSNSRIAFVFPSKLPPRNP 60

Query: 73  SIPPLSPPLPPPPPHNDHHSEFQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDF 132
           +I PLSPPLPPPPPHNDHHS+FQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDF
Sbjct: 61  TILPLSPPLPPPPPHNDHHSDFQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDF 120

Query: 133 MTSMNFTALEFRRIVGMCPEILTSRASDLIPIFTFLLREARVDGADIKRVINRRPRLLAC 192
           MTSMNFTALEFRRIVGMCPEILTS ASDL+PIFTFLLREARVDG+DIKRVINRRPRLLAC
Sbjct: 121 MTSMNFTALEFRRIVGMCPEILTSPASDLVPIFTFLLREARVDGSDIKRVINRRPRLLAC 180

Query: 193 SVKDRLRPTLYFLQSIGISE---------------------------------------- 252
           SVKDRLRPTLYFLQSIGISE                                        
Sbjct: 181 SVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRF 240

Query: 253 --LFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFP 279
             LFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFP
Sbjct: 241 PQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFP 300

[Close]

BLAST of Clc01G14750 vs. NCBI nr
Match: KAE8647430.1 (hypothetical protein Csa_003511 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 1.3e-111
Identity = 224/298 (75.17%), Postives = 234/298 (78.52%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           SPLF +   S +L  P+  +  +S   P   PPRNP+IPPLSPPLPP PPH DHHS+FQE
Sbjct: 21  SPLFPSLPRSRTLHFPVLSNSRTSFIFPSKLPPRNPAIPPLSPPLPPSPPHTDHHSDFQE 80

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFT LE RRIVGMCPEILTS
Sbjct: 81  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTTLELRRIVGMCPEILTS 140

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE---- 205
           RAS LIPIFTFLLREARVDG+DIKRVINRRPRLLACSVKD+LRPTLYFLQSIGISE    
Sbjct: 141 RASVLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHKH 200

Query: 206 --------------------------------------LFCYSIKENLEPKLNYFVVEMG 265
                                                 LFCYSIKENLEPKLNYFVVEMG
Sbjct: 201 TSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMG 260

Query: 266 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQWEWE 279
           RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK+SEMKFREKLEQWEWE
Sbjct: 261 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLEQWEWE 318

[Close]

BLAST of Clc01G14750 vs. NCBI nr
Match: XP_016902903.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 2.4e-110
Identity = 222/298 (74.50%), Postives = 233/298 (78.19%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           SPLF +     +L  P+  +  +S   P   PPR P+IPPLS PLPP PPH DHHS+FQE
Sbjct: 77  SPLFPSLPRFRTLHFPVLSNSRTSFIFPSKLPPRVPTIPPLSSPLPPSPPHTDHHSDFQE 136

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPE+LTS
Sbjct: 137 KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEVLTS 196

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE---- 205
           RASDLIPIFTFLLREARVDG+DIKRVINRRPRLLACSVKD+LRPTLYFLQSIGISE    
Sbjct: 197 RASDLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHKH 256

Query: 206 --------------------------------------LFCYSIKENLEPKLNYFVVEMG 265
                                                 LFCYSIKENLEPKLNYFVVEMG
Sbjct: 257 TSLLSCSVEEKLIPRIEFFENLGFCRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMG 316

Query: 266 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQWEWE 279
           RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK+SEMKFREKLE WEWE
Sbjct: 317 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLEPWEWE 374

[Close]

BLAST of Clc01G14750 vs. NCBI nr
Match: XP_038883666.1 (transcription termination factor MTEF1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 408.7 bits (1049), Expect = 4.1e-110
Identity = 231/317 (72.87%), Postives = 242/317 (76.34%), Query Frame = 0


Query: 13  MADSSTILLL--------PLFSPLFLAPEPSNSLSSPIPESLSSS------PPNSPPRNP 72
           MADSS++ LL           SPLF +   S +L  P+   LS+S      P   PPRNP
Sbjct: 1   MADSSSLHLLSNGGFIHHSSPSPLFPSLPRSRTLHFPV---LSNSRIAFVFPSKLPPRNP 60

Query: 73  SIPPLSPPLPPPPPHNDHHSEFQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDF 132
           +I PLSPPLPPPPPHNDHHS+FQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDF
Sbjct: 61  TILPLSPPLPPPPPHNDHHSDFQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDF 120

Query: 133 MTSMNFTALEFRRIVGMCPEILTSRASDLIPIFTFLLREARVDGADIKRVINRRPRLLAC 192
           MTSMNFTALEFRRIVGMCPEILTS ASDL+PIFTFLLREARVDG+DIKRVINRRPRLLAC
Sbjct: 121 MTSMNFTALEFRRIVGMCPEILTSPASDLVPIFTFLLREARVDGSDIKRVINRRPRLLAC 180

Query: 193 SVKDRLRPTLYFLQSIGISE---------------------------------------- 252
           SVKDRLRPTLYFLQSIGISE                                        
Sbjct: 181 SVKDRLRPTLYFLQSIGISEVHKHTSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRF 240

Query: 253 --LFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFP 274
             LFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFP
Sbjct: 241 PQLFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFP 300

[Close]

BLAST of Clc01G14750 vs. NCBI nr
Match: XP_011657726.1 (transcription factor E2FA isoform X1 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 8.5e-108
Identity = 219/294 (74.49%), Postives = 230/294 (78.23%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           SPLF +   S +L  P+  +  +S   P   PPRNP+IPPLSPPLPP PPH DHHS+FQE
Sbjct: 21  SPLFPSLPRSRTLHFPVLSNSRTSFIFPSKLPPRNPAIPPLSPPLPPSPPHTDHHSDFQE 80

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFT LE RRIVGMCPEILTS
Sbjct: 81  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTTLELRRIVGMCPEILTS 140

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE---- 205
           RAS LIPIFTFLLREARVDG+DIKRVINRRPRLLACSVKD+LRPTLYFLQSIGISE    
Sbjct: 141 RASVLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHKH 200

Query: 206 --------------------------------------LFCYSIKENLEPKLNYFVVEMG 265
                                                 LFCYSIKENLEPKLNYFVVEMG
Sbjct: 201 TSLLSCSVEEKLIPRIEFFENLGFSRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMG 260

Query: 266 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQ 275
           RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK+SEMKFREKLE+
Sbjct: 261 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLEK 314

[Close]

BLAST of Clc01G14750 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-28
Identity = 77/241 (31.95%), Postives = 118/241 (48.96%), Query Frame = 0


Query: 80  FQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEI 139
           F+EK+++L  + +D    ++ +P + SA +  + S    ++S   +     RI+ M P++
Sbjct: 33  FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 92

Query: 140 LTS-RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGI-- 199
           LTS   S+++P+  FL  E  +   DI + I+R PRLL  SV  +LRP L FL+++G   
Sbjct: 93  LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 152

Query: 200 ---------------------------------------------SELFCYSIKENLEPK 259
                                                          L  YS+  NL PK
Sbjct: 153 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 212

Query: 260 LNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREK 273
           + +F+ EM  ++KELK FP YFSFSLE +IKPRH+   E G+  PL E+LK S+ +F   
Sbjct: 213 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHW 272

[Close]

BLAST of Clc01G14750 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-17
Identity = 60/206 (29.13%), Postives = 103/206 (50.00%), Query Frame = 0


Query: 84  MLFLDSIGID---FLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEIL 143
           M FL+++GID   +  +I   P + + S   + S V+F++    T  +  RI+  CP I+
Sbjct: 272 MAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEFLSQTGLTEEQIGRILTRCPNIM 331

Query: 144 TSRASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYF-------LQS 203
           +    D +       R   V   D+  +++R P+    S++  L+P   F       L  
Sbjct: 332 SYSVEDKLRPTMEYFRSLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDE 391

Query: 204 IGI-----SELFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSC 263
           IGI       L+ +S+KEN+ PK +YF   M     EL +FP +F +SL+ RIKPR++  
Sbjct: 392 IGIMISRYGALYTFSLKENVMPKWDYFQT-MDYPKSELVKFPQFFGYSLQERIKPRYELV 451

Query: 264 VEKGVCFPLPELLKTSEMKFREKLEQ 275
              GV   L ++L  S ++F + +++
Sbjct: 452 QRSGVRLLLNQVLSLSGIEFEKVVKK 473

[Close]

BLAST of Clc01G14750 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-15
Identity = 63/182 (34.62%), Postives = 89/182 (48.90%), Query Frame = 0


Query: 112 IRSAVDFMTSMNFTALEFRRIVGMCPEILT-SRASDLIPIFTFLLREARVDGADIKRVIN 171
           I   V F+  M         ++   P +LT S    + P+  FLL  A V   DI +VI 
Sbjct: 424 IAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIA 483

Query: 172 RRPRLLACSVKDRLRPTLYFLQSIGI------------SELFCYSIKENLEPKLNYFVVE 231
             P LL CS+  +L P + +  S+GI              L  Y++ +NL PK  Y    
Sbjct: 484 MDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRRT 543

Query: 232 MGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKF----REKLEQ 277
           M R L++L EFP +FS+SLE RI PRH   VE  V F L  +L  ++ +F    R+K+E+
Sbjct: 544 MIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRVRDKVER 603

[Close]

BLAST of Clc01G14750 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-12
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 104 VASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTSRAS-DLIPIFTFLLREARVDG 163
           V ++  P IR  ++    +     +  ++V + P+IL  R        + FL +E     
Sbjct: 287 VENSLRPTIRYLIE---EVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPR 346

Query: 164 ADIKRVINRRPRLLACSVKDRLRPTLYFLQSIG------------ISELFCYSIKENLEP 223
             + +++ + P+LL  S+ D   P + FL+SIG            ++++   S+++NL+P
Sbjct: 347 DSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKP 406

Query: 224 KLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVE-----KGVCFPLPELLKTSE 266
           K  Y V E+  E+  L ++P Y S SL+ RI+PRH+  VE     KG  FPL  L+   E
Sbjct: 407 KYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGP-FPLSSLVPNDE 462

[Close]

BLAST of Clc01G14750 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.5e-10
Identity = 60/207 (28.99%), Postives = 100/207 (48.31%), Query Frame = 0


Query: 87  LDSIGIDFLS---VIKDHPPVASASL-----PDIRSAVDFMTSMNFTALEFRRIVGMCPE 146
           L+ IG+  L+   +I+  P V    L     P+I + ++F   +   AL F  IV   P+
Sbjct: 259 LEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEF--GVRKEALAF--IVAQYPD 318

Query: 147 ILTSRASDLIPIFTFLLREA-RVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIG-- 206
           IL     D +     L   +  V   D  RVI R P+ ++   +  +   + FL S G  
Sbjct: 319 ILGIELRDKLATQQSLFESSILVSSEDFGRVIERMPQAISLG-RTAVLKHVNFLTSCGFL 378

Query: 207 ---ISELF--CYSI----KENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQ 266
              +S++   C  +     + ++    YF  EM R+L+EL EFP +F++ LE+ ++PRH+
Sbjct: 379 LSQVSKMVVACPQLLALNMDIMKMSFEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHE 438

Query: 267 SCVEKGVCFPLPELLKTSEMKFREKLE 274
              +KG    L  LL  S+ KF E+++
Sbjct: 439 MVAKKGFTCSLAWLLNCSDAKFDERMK 460

[Close]

BLAST of Clc01G14750 vs. ExPASy TrEMBL
Match: A0A0A0KKL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454440 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.8e-114
Identity = 219/251 (87.25%), Postives = 229/251 (91.24%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           SPLF +   S +L  P+  +  +S   P   PPRNP+IPPLSPPLPP PPH DHHS+FQE
Sbjct: 21  SPLFPSLPRSRTLHFPVLSNSRTSFIFPSKLPPRNPAIPPLSPPLPPSPPHTDHHSDFQE 80

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFT LE RRIVGMCPEILTS
Sbjct: 81  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTTLELRRIVGMCPEILTS 140

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISELFCY 205
           RAS LIPIFTFLLREARVDG+DIKRVINRRPRLLACSVKD+LRPTLYFLQSIGISELFCY
Sbjct: 141 RASVLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISELFCY 200

Query: 206 SIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK 265
           SIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK
Sbjct: 201 SIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK 260

Query: 266 TSEMKFREKLE 274
           +SEMKFREKLE
Sbjct: 261 SSEMKFREKLE 271

[Close]

BLAST of Clc01G14750 vs. ExPASy TrEMBL
Match: A0A1S4E3U8 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107991918 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 1.2e-110
Identity = 222/298 (74.50%), Postives = 233/298 (78.19%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           SPLF +     +L  P+  +  +S   P   PPR P+IPPLS PLPP PPH DHHS+FQE
Sbjct: 77  SPLFPSLPRFRTLHFPVLSNSRTSFIFPSKLPPRVPTIPPLSSPLPPSPPHTDHHSDFQE 136

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPE+LTS
Sbjct: 137 KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEVLTS 196

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE---- 205
           RASDLIPIFTFLLREARVDG+DIKRVINRRPRLLACSVKD+LRPTLYFLQSIGISE    
Sbjct: 197 RASDLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHKH 256

Query: 206 --------------------------------------LFCYSIKENLEPKLNYFVVEMG 265
                                                 LFCYSIKENLEPKLNYFVVEMG
Sbjct: 257 TSLLSCSVEEKLIPRIEFFENLGFCRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMG 316

Query: 266 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQWEWE 279
           RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK+SEMKFREKLE WEWE
Sbjct: 317 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLEPWEWE 374

[Close]

BLAST of Clc01G14750 vs. ExPASy TrEMBL
Match: A0A5A7SKM3 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001730 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 2.0e-107
Identity = 218/293 (74.40%), Postives = 229/293 (78.16%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           SPLF +     +L  P+  +  +S   P   PPR P+IPPLS PLPP PPH DHHS+FQE
Sbjct: 65  SPLFPSLPRFRTLHFPVLSNSRTSFIFPSKLPPRVPTIPPLSSPLPPSPPHTDHHSDFQE 124

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPE+LTS
Sbjct: 125 KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEVLTS 184

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE---- 205
           RASDLIPIFTFLLREARVDG+DIKRVINRRPRLLACSVKD+LRPTLYFLQSIGISE    
Sbjct: 185 RASDLIPIFTFLLREARVDGSDIKRVINRRPRLLACSVKDQLRPTLYFLQSIGISEVHKH 244

Query: 206 --------------------------------------LFCYSIKENLEPKLNYFVVEMG 265
                                                 LFCYSIKENLEPKLNYFVVEMG
Sbjct: 245 TSLLSCSVEEKLIPRIEFFENLGFCRRDALIMFRRFPQLFCYSIKENLEPKLNYFVVEMG 304

Query: 266 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLE 274
           RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLK+SEMKFREKLE
Sbjct: 305 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKSSEMKFREKLE 357

[Close]

BLAST of Clc01G14750 vs. ExPASy TrEMBL
Match: A0A6J1IAF5 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471129 PE=3 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 9.8e-102
Identity = 209/296 (70.61%), Postives = 223/296 (75.34%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSSS---PPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQE 85
           S LF +   S +L  PI  +  ++   P   P R P IPPLSPPLPPPP H+   SEFQE
Sbjct: 24  SSLFPSLSRSRTLQFPIISNAKTAFILPSKLPSRAPDIPPLSPPLPPPPSHSGSRSEFQE 83

Query: 86  KMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILTS 145
           KMLFLDSIGIDFLSVIKDHPPVA+ASL DIRSAVDFMTSMNFTA+EFRRIVGMCPEILTS
Sbjct: 84  KMLFLDSIGIDFLSVIKDHPPVATASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILTS 143

Query: 146 RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE---- 205
           R SD++P+FTFLLREARVDG+DIKRVINRRPRLLACSVK+RLRPT+YFLQSIGISE    
Sbjct: 144 RVSDIVPVFTFLLREARVDGSDIKRVINRRPRLLACSVKNRLRPTMYFLQSIGISEVHKH 203

Query: 206 --------------------------------------LFCYSIKENLEPKLNYFVVEMG 265
                                                 LFC SIKENLEPKLNYFVVEMG
Sbjct: 204 TSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCCSIKENLEPKLNYFVVEMG 263

Query: 266 RELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQWE 277
           RELKELKEFPHYFSFSLENRIKPRHQ CVEKGVCFPLP LLKTSEMKFREKLE WE
Sbjct: 264 RELKELKEFPHYFSFSLENRIKPRHQICVEKGVCFPLPVLLKTSEMKFREKLEPWE 319

[Close]

BLAST of Clc01G14750 vs. ExPASy TrEMBL
Match: A0A6J1HHJ6 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463541 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 6.4e-101
Identity = 209/297 (70.37%), Postives = 220/297 (74.07%), Query Frame = 0


Query: 26  SPLFLAPEPSNSLSSPIPESLSS----SPPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQ 85
           SP  L P  S S +   P   +      P   P R P IPPLSPPLPPPP H+   SEFQ
Sbjct: 22  SPSSLFPSLSRSRTLQFPTINAKIAFILPSKLPSRAPDIPPLSPPLPPPPSHSGSRSEFQ 81

Query: 86  EKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEILT 145
           EKMLFLDSIGIDFLSVIKDHPPVA+ASL DIRSAVDFMTSMNFTA+EFRRIVGMCPEILT
Sbjct: 82  EKMLFLDSIGIDFLSVIKDHPPVATASLADIRSAVDFMTSMNFTAVEFRRIVGMCPEILT 141

Query: 146 SRASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGISE--- 205
           SR SD++P+FTFLLREARVDG+DIKRVINRRPRLLACSVK+RLRPT+YFLQSIGISE   
Sbjct: 142 SRVSDIVPVFTFLLREARVDGSDIKRVINRRPRLLACSVKNRLRPTMYFLQSIGISEVHK 201

Query: 206 ---------------------------------------LFCYSIKENLEPKLNYFVVEM 265
                                                  LFC SIKENLEPKLNYFVVEM
Sbjct: 202 HTSLLSCSVEEKLIPRIEFFENLGFSRRDAVIMFRRFPQLFCCSIKENLEPKLNYFVVEM 261

Query: 266 GRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREKLEQWE 277
           GRELKELKEFPHYFSFSLENRIKPRHQ CVEKGVCFPLP LLKTSEMKFREKLE WE
Sbjct: 262 GRELKELKEFPHYFSFSLENRIKPRHQICVEKGVCFPLPVLLKTSEMKFREKLEPWE 318

[Close]

BLAST of Clc01G14750 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.7e-56
Identity = 129/273 (47.25%), Postives = 165/273 (60.44%), Query Frame = 0


Query: 47  SSSPPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQEKMLFLDSIGIDFLSVIKDHPPVAS 106
           +SS  +S  ++P IP LS             S   EK+++LDS+GIDFL++I  HPP+ S
Sbjct: 40  TSSSSSSFFKSPDIPSLSSTTTTTTTTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLS 99

Query: 107 ASLPDIRSAVDFMTS--MNFTALEFRRIVGMCPEILTS-RASDLIPIFTFLLREARVDGA 166
            +L  + S VD+MT+  +NFT  +FRR+V MCPE+LTS   S  IP+ TFLLRE  VD  
Sbjct: 100 TALSAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSI 159

Query: 167 -DIKRVINRRPRLLACSVKDRLRPTLYFLQSIGI-------------------------- 226
            D+++ + RRPRLLACSV  +LRPTLYFLQ IGI                          
Sbjct: 160 FDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPHKHTYLLSCSVDNKLVPRIDYFE 219

Query: 227 ----------------SELFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENR 274
                            +LF YSI EN EPKL Y +VEMGR+++E+ EFP YFSFSLENR
Sbjct: 220 KLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENR 279

[Close]

BLAST of Clc01G14750 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.7e-56
Identity = 129/273 (47.25%), Postives = 165/273 (60.44%), Query Frame = 0


Query: 47  SSSPPNSPPRNPSIPPLSPPLPPPPPHNDHHSEFQEKMLFLDSIGIDFLSVIKDHPPVAS 106
           +SS  +S  ++P IP LS             S   EK+++LDS+GIDFL++I  HPP+ S
Sbjct: 40  TSSSSSSFFKSPDIPSLSSTTTTTTTTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLS 99

Query: 107 ASLPDIRSAVDFMTS--MNFTALEFRRIVGMCPEILTS-RASDLIPIFTFLLREARVDGA 166
            +L  + S VD+MT+  +NFT  +FRR+V MCPE+LTS   S  IP+ TFLLRE  VD  
Sbjct: 100 TALSAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSI 159

Query: 167 -DIKRVINRRPRLLACSVKDRLRPTLYFLQSIGI-------------------------- 226
            D+++ + RRPRLLACSV  +LRPTLYFLQ IGI                          
Sbjct: 160 FDLRQALRRRPRLLACSVDHQLRPTLYFLQRIGILDPHKHTYLLSCSVDNKLVPRIDYFE 219

Query: 227 ----------------SELFCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENR 274
                            +LF YSI EN EPKL Y +VEMGR+++E+ EFP YFSFSLENR
Sbjct: 220 KLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENR 279

[Close]

BLAST of Clc01G14750 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-34
Identity = 84/241 (34.85%), Postives = 130/241 (53.94%), Query Frame = 0


Query: 79  EFQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPE 138
           + +EK+L L+ +GID    +  +P + SA L  I+S + F+ S      +  RI+GMCP+
Sbjct: 54  QMKEKILCLELMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPK 113

Query: 139 ILTSRA-SDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGIS 198
           ILTS   ++L P+F FL  +  V     +RVI + PRLL  SV+D+L+P L++LQ +G+ 
Sbjct: 114 ILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLK 173

Query: 199 E----------------------------------------------LFCYSIKENLEPK 258
           +                                              LF +SI+ N +PK
Sbjct: 174 DLEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPK 233

Query: 259 LNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREK 273
           L+YF+ E+  +L+ LKEFP YF+FSLE RIKPRH   +E+G+  PL  +LK+++ +F + 
Sbjct: 234 LDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQL 293

[Close]

BLAST of Clc01G14750 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-29
Identity = 77/241 (31.95%), Postives = 118/241 (48.96%), Query Frame = 0


Query: 80  FQEKMLFLDSIGIDFLSVIKDHPPVASASLPDIRSAVDFMTSMNFTALEFRRIVGMCPEI 139
           F+EK+++L  + +D    ++ +P + SA +  + S    ++S   +     RI+ M P++
Sbjct: 32  FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 91

Query: 140 LTS-RASDLIPIFTFLLREARVDGADIKRVINRRPRLLACSVKDRLRPTLYFLQSIGI-- 199
           LTS   S+++P+  FL  E  +   DI + I+R PRLL  SV  +LRP L FL+++G   
Sbjct: 92  LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 151

Query: 200 ---------------------------------------------SELFCYSIKENLEPK 259
                                                          L  YS+  NL PK
Sbjct: 152 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 211

Query: 260 LNYFVVEMGRELKELKEFPHYFSFSLENRIKPRHQSCVEKGVCFPLPELLKTSEMKFREK 273
           + +F+ EM  ++KELK FP YFSFSLE +IKPRH+   E G+  PL E+LK S+ +F   
Sbjct: 212 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHW 271

[Close]

BLAST of Clc01G14750 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-20
Identity = 78/267 (29.21%), Postives = 118/267 (44.19%), Query Frame = 0


Query: 60  IPPLSPPLPPPPPHND------HHSEFQEKMLFLDSIGIDFLSVIKDHPPVA--SASLPD 119
           + PLS    PP P +         +  +E +  L S+GI     +  +P +A  +  L  
Sbjct: 10  LQPLSSFSSPPSPSSSKPLYLKFQTSHRENLRHLSSLGI-----VPQNPRLAPPANDLSV 69

Query: 120 IRSAVDFMTSMNFTALEFRRIVGMCPEIL--TSRASDLIPIFTFLLREARVDGADIKRVI 179
           I SAV+ + S   +  +F R+V +CP++   T   S L P+F FL  E      + + +I
Sbjct: 70  ILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLI 129

Query: 180 NRRPRLLACSVKDRLRPTLYFLQSIGISEL------------------------------ 239
              P +L   V+  LRPTL +L+ +G+  L                              
Sbjct: 130 VNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGF 189

Query: 240 ---------------FCYSIKENLEPKLNYFVVEMGRELKELKEFPHYFSFSLENRIKPR 272
                          F YS+++NL PK  + V +M REL+ELK+FP YF+FSL  RI+PR
Sbjct: 190 EHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPR 249

The following BLAST results are available for this feature:

BLAST of Clc01G14750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883667.1	2.3e-113	72.98	transcription termination factor MTEF1, chloroplastic isoform X2 [Benincasa hisp...	[more]
KAE8647430.1	1.3e-111	75.17	hypothetical protein Csa_003511 [Cucumis sativus]	[more]
XP_016902903.1	2.4e-110	74.50	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo]	[more]
XP_038883666.1	4.1e-110	72.87	transcription termination factor MTEF1, chloroplastic isoform X1 [Benincasa hisp...	[more]
XP_011657726.1	8.5e-108	74.49	transcription factor E2FA isoform X1 [Cucumis sativus]	[more]

BLAST of Clc01G14750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	1.8e-28	31.95	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	3.2e-17	29.13	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	2.3e-15	34.62	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	1.4e-12	28.89	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	8.5e-10	28.99	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]

BLAST of Clc01G14750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKL6	3.8e-114	87.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454440 PE=3 SV=1	[more]
A0A1S4E3U8	1.2e-110	74.50	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7SKM3	2.0e-107	74.40	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1IAF5	9.8e-102	70.61	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]
A0A6J1HHJ6	6.4e-101	70.37	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]

BLAST of Clc01G14750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36000.1	4.7e-56	47.25	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	4.7e-56	47.25	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	1.7e-34	34.85	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	1.3e-29	31.95	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	1.9e-20	29.21	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 223..254 e-value: 0.0022 score: 27.2 coord: 198..222 e-value: 630.0 score: 5.4 coord: 95..125 e-value: 240.0 score: 8.7 coord: 166..197 e-value: 1.3E-5 score: 34.7 coord: 130..161 e-value: 7.3 score: 15.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 79..158 e-value: 2.2E-5 score: 23.5 coord: 197..268 e-value: 8.4E-16 score: 57.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 199..274
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 68..198
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 72..277 e-value: 2.0E-38 score: 134.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..74
None	No IPR available	PANTHER	PTHR13068:SF46	OS03G0360600 PROTEIN	coord: 68..198 coord: 199..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G14750.1	Clc01G14750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016020	membrane
molecular_function	GO:0003690	double-stranded DNA binding