![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Clc01G14720 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTTCACAAAAGATAAGTGTAGCCTGGTTGCACTTAAATTTTTTCCTAATATGAAACAAGAATTATAAGGTGAGGGAACATGTAAATTAACAATATCGTTTGTTAGACTTTTAATTTTATATTTAATGCGTTAATTTTTTAAATAAAAAAAATCATGAACTTAATTGAAACCCACCAAAATTTAAATTTAAGTTCAATTAGACACCAATCTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTAGAGACAAAGTTCAATGTTGTATTAATTCTATTAATTTTAAAACAATACACACTTATTAAAAATTCAAATACCTATTTTAAAAAAAAAAAAATCACAGACATATTTATCATAAAATTAAAAAATTAATAATTTATTAGGTATATTTTCAACTCGAGAGATATACTAAGTATAATTAAATTCTTTTTTTTTAAATGTATAATTAAATTTTTAAAGTTACATATTTGTGTCTAGTAAATCTATATTTAAAAAGAGCTAATTTAACATAAACTCAAATATTATCACTCGATTGGACAAAATTATCTCATTCAATCCAATAGACATGACGAAGATGCATGACATTATCGAGATTCACCAGCTTTTTATCTCCAATTTTAATATAAGAGACATGACCACTAGTAATTACTGCAAATTACACTTAAAAAAATTCTTCGAGATTAATAATGTGTAATTTAGTCATTAATTTAAAAAATAATATGTTAATCATTGATTGGTGAAAATTAATATTTTATCCATGATATTGTTAACATACTTGGCAAAGTAATTTAACCATTTTCTTAACATTGCTTAGAGAGACGAAAGGGTTCGTGCTGAATTGCGTCGAATTGAAGCGCAGCGCATTGCCAATAGCCGACGTTCTCCAACGTCGAGGGGGCTGCTTCGAGTAACGCCGGTCAGTACTATGCGTCCATCAACAATATTCATTATTACAAATTTTCAATGATTTCTCATCAATCTTCGAATTTCCCCTTCCTCTTGCTCCTTTGTTGATGAAAATTTTTATGTTATTCGATCAAAATTGAGACAGTATATTATAGATTCTACAATTTGACTATTGAAGCATTCAATTCTCTGAAACTGCGTCTTCTCATGGATGCAAATCTTAACAGGAATCGCAGGGGATTGTTCAGACATTTTATCGAACAGTATGGCTTCAAGAGGGGCAAACGTGGTGCTATCGAGGGCTAATAGGATGAAGACGAAGTTGCAATCAGCACTATCAGCGAGTTTTTTGGAAATCGAGGACGTTTCCCACCAACACGCTGGGCATGCGGCTGTGAAAGGCAGCGCTGGAGAAACACATTTCAATGTGAAGATTGTATCTCCAAAATTTGAAGGGCAGAGCCTCGTGAAGCGCCATAGAATGGTGTATGATGCGTTGGCTGAAGAGCTTCAGTCTGGACTGCATGCAATTTCGATAGTGGCAAAGACTCCCCAAGAAACTGGGGCAAAATGATGTGCAGATTCGTCTCACAATGTGAGTTCTCAAATGATCTCTTAGTTTAGAATTGAAAGAATTTAGGAATTTAAGCTGGCTCTTATATGATGTTTTCTGTTATAATGATATGCTATTGATCAACTTCAAGAGATGAGTCAAAGCTTTAAATGCCATGGAAAATCTTCTCAGCTTGTTGATTGAGACACTGTAACGTGGGAGAATACTGCTCAGGAAAAAAAAAAAAAAAAAAGAATAATACATTTTCACTTAATAACTTAACCATGCTTCTTCCACCATATTTGAATAGATTGGTTTTTTTAAAGAAGTTCTTGTTGAACTGAATTGACTTCTTTTGGATCTAAAAATACACTATTTTGTTGCCATAACCCCCAACATAAAAAGGGCTATCTACTTTCATCTTAGTTTCAGTGTAGTCCTCTCTTTATGCAATATTTTACCTAGTGGAACTCCATTTTATTGCGGAGTTTTTCTGGGCTTGATTTTTTGTAACCATGTATACCTTTATTTTTTTATTTTATTTTTTTATTATTATTATTTTTTTCACAATGAAAGTAGTTGTTTTTTTTAAAAAGAACGTAATCTTCACTTTATGTATTTAACATTTTCATTATAATACTTCACTTTATGTATTTAACATTTTCATTATAATACATGTTCTTTGATTAAAGTGTAATAGGCATGCCTGTAATGTAGGAGAATGCTACTCGGAGAAAAAAATAATATATTTTCACTCAATAGCTGCCTTAGCTGTGCTTCTTCTATCATATTTGAATAGATTGGTTGTTTTTAAATAGTTTTTATTGAACTGAATTGACTTCTTTTGGATCTAAAAATACACTATTTTGTTGTCATACCGGCCAGCTACTTTCATCTTAGTTTCAATGTAGTCTTCTCTTTATGCCATATTTTACCTAGTGGAACCCCGAGTTTTTGTGGGCTTGACATTTTCCCATGTATTTTTTCATTTTTCTCTCAATGAAAGTAGTTTTTTTGTTTGAAAAAACATGTAGTCTTCACTTTATGCGTTTTGCATTTTCATTATAATACATGCGTTCCTTGATTAAAGTGTGACAGGCATGCCTGCATTAGTGAGGAGTAATAGACATTCAACTTAACTAGTTATTTATAACTTCACTTTAAAAGGAGTCTTATATTCTGAAAAAGGATTGGTTTTAGCCTTCTTTCTACTAGAGCTCGATCTAATTTCATATTTTTCCACCACTGTTATTTGTCATCTTTCACGTCATTGAAACAAATTCATTTGCCACACCACAAATAACTTGTCATATTGAGAAACAACTACTCTTGACTTACGATTCAAAAACATCTAGTAAGGATCTAAAATAAGGGTTCCTATGTGATGGTCCCAATTGGGAACCTATTTACTCCCTCACTAACTGTGCGTAAACATAAACATCTAGTAAGCATCTAAATAAGGATTATGCGATTTGTCGCCTTTCACTTCATTGAAATAAAGTGTGTCATGAAACTCATCTACAAATAACTTGTCATATTGGGAATCTGTTACTCCACCCATATTCCGGTGCTGAAACATCTAGTAAGGATCCAAATAAGGGTTCGTGTGACGGTCACAATTTAATTCACGTGCGAGGTAATCTTCTAAAGGCCAAACTCCATGGTTAGCACATGTAGAATAGAATACTTCCATGCATCATCAATGAAACCTCCCTTGATTGCATACCTGCACAATAACTGATCATTATGCCTCCCTCCTCACGTTATCAAAAAGTCTGTTTAGCTCCTTTTGTATGTCTTGCAATGCCCGTCATCGTATTACTAAATCATTCCTTTGACATTTTCCATACATATGAAACAGATCACTTTGTGCTCAAACATGAATTTGCTCCCACTTTAAGTCTCAAACCTTGGATTTTCTTCATCTTGCAGGGGGCCAAATTGCCATAAACAATTGCAAGAAAGGGGTGGAGCCAAGAAAGGAGGAGTGAGCTTTACTCCTTTCAACTTGACGTAATCTCGAAAATGTATGTATAGGTACTTGAGATAGTTTTCTTTCTAATTTGTTCTCCTAAAAATTTTAGGACTAAATACTTTGTGGCTCCTTACAAAAATTTCTAGTTCTGCCTTCATTATAAAGATAGACTTCTTGTC ATGGACTTCACAAAAGATAAGTGTAGCCTGAGAGACGAAAGGGTTCGTGCTGAATTGCGTCGAATTGAAGCGCAGCGCATTGCCAATAGCCGACGTTCTCCAACGTCGAGGGGGCTGCTTCGAGTAACGCCGGTCAGAATCGCAGGGGATTGTTCAGACATTTTATCGAACAGTATGGCTTCAAGAGGGGCAAACGTGGTGCTATCGAGGGCTAATAGGATGAAGACGAAGTTGCAATCAGCACTATCAGCGAGTTTTTTGGAAATCGAGGACGTTTCCCACCAACACGCTGGGCATGCGGCTGTGAAAGGCAGCGCTGGAGAAACACATTTCAATGTGAAGATTGTATCTCCAAAATTTGAAGGGCAGAGCCTCGTGAAGCGCCATAGAATGGTGTATGATGCGTTGGCTGAAGAGCTTCAGTCTGGACTGCATGCAATTTCGATAGTGGCAAAGACTCCCCAAGAAACTGGGGCAAAATGATGTGCAGATTCGTCTCACAATGGGGCCAAATTGCCATAAACAATTGCAAGAAAGGGGTGGAGCCAAGAAAGGAGGAGTGAGCTTTACTCCTTTCAACTTGACGTAATCTCGAAAATGTATGTATAGGTACTTGAGATAGTTTTCTTTCTAATTTGTTCTCCTAAAAATTTTAGGACTAAATACTTTGTGGCTCCTTACAAAAATTTCTAGTTCTGCCTTCATTATAAAGATAGACTTCTTGTC ATGGACTTCACAAAAGATAAGTGTAGCCTGAGAGACGAAAGGGTTCGTGCTGAATTGCGTCGAATTGAAGCGCAGCGCATTGCCAATAGCCGACGTTCTCCAACGTCGAGGGGGCTGCTTCGAGTAACGCCGGTCAGAATCGCAGGGGATTGTTCAGACATTTTATCGAACAGTATGGCTTCAAGAGGGGCAAACGTGGTGCTATCGAGGGCTAATAGGATGAAGACGAAGTTGCAATCAGCACTATCAGCGAGTTTTTTGGAAATCGAGGACGTTTCCCACCAACACGCTGGGCATGCGGCTGTGAAAGGCAGCGCTGGAGAAACACATTTCAATGTGAAGATTGTATCTCCAAAATTTGAAGGGCAGAGCCTCGTGAAGCGCCATAGAATGGTGTATGATGCGTTGGCTGAAGAGCTTCAGTCTGGACTGCATGCAATTTCGATAGTGGCAAAGACTCCCCAAGAAACTGGGGCAAAATGA MDFTKDKCSLRDERVRAELRRIEAQRIANSRRSPTSRGLLRVTPVRIAGDCSDILSNSMASRGANVVLSRANRMKTKLQSALSASFLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK Homology
BLAST of Clc01G14720 vs. NCBI nr
Match: KGN64204.1 (hypothetical protein Csa_014195 [Cucumis sativus]) HSP 1 Score: 193.0 bits (489), Expect = 2.0e-45 Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0
BLAST of Clc01G14720 vs. NCBI nr
Match: TYJ99061.1 (protein BOLA1 [Cucumis melo var. makuwa]) HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44 Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0
BLAST of Clc01G14720 vs. NCBI nr
Match: XP_022994950.1 (protein BOLA1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 185.7 bits (470), Expect = 3.2e-43 Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0
BLAST of Clc01G14720 vs. NCBI nr
Match: XP_028756592.1 (protein BOLA1, chloroplastic-like [Prosopis alba]) HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37 Identity = 85/103 (82.52%), Postives = 98/103 (95.15%), Query Frame = 0
BLAST of Clc01G14720 vs. NCBI nr
Match: XP_028779098.1 (protein BOLA1, chloroplastic-like [Prosopis alba]) HSP 1 Score: 166.0 bits (419), Expect = 2.6e-37 Identity = 85/103 (82.52%), Postives = 98/103 (95.15%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy Swiss-Prot
Match: Q84W65 (SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SUFE1 PE=1 SV=2) HSP 1 Score: 118.6 bits (296), Expect = 6.4e-26 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy Swiss-Prot
Match: Q682I1 (Protein BOLA1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BOLA1 PE=1 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23 Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy Swiss-Prot
Match: Q5RCE5 (BolA-like protein 1 OS=Pongo abelii OX=9601 GN=BOLA1 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12 Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy Swiss-Prot
Match: Q9D8S9 (BolA-like protein 1 OS=Mus musculus OX=10090 GN=Bola1 PE=1 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12 Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy Swiss-Prot
Match: Q3E793 (BolA-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BOL1 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.0e-12 Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy TrEMBL
Match: A0A0A0LT67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043070 PE=3 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 9.8e-46 Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy TrEMBL
Match: A0A5D3BK08 (Protein BOLA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002650 PE=3 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 6.3e-45 Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy TrEMBL
Match: A0A6J1K2R4 (protein BOLA1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490536 PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43 Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy TrEMBL
Match: A0A5P1FAG7 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F33630 PE=3 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36 Identity = 92/154 (59.74%), Postives = 114/154 (74.03%), Query Frame = 0
BLAST of Clc01G14720 vs. ExPASy TrEMBL
Match: A0A444YZ34 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B05g074404 PE=3 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36 Identity = 87/104 (83.65%), Postives = 97/104 (93.27%), Query Frame = 0
BLAST of Clc01G14720 vs. TAIR 10
Match: AT4G26500.1 (chloroplast sulfur E ) HSP 1 Score: 118.6 bits (296), Expect = 4.5e-27 Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 0
BLAST of Clc01G14720 vs. TAIR 10
Match: AT1G55805.1 (BolA-like family protein ) HSP 1 Score: 111.3 bits (277), Expect = 7.2e-25 Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 0
BLAST of Clc01G14720 vs. TAIR 10
Match: AT5G17560.1 (BolA-like family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06 Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 0
BLAST of Clc01G14720 vs. TAIR 10
Match: AT5G09830.1 (BolA-like family protein ) HSP 1 Score: 50.4 bits (119), Expect = 1.5e-06 Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|