Clc01G14230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G14230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein PXR1
Location	ClcChr01: 27056984 .. 27058254 (-)
RNA-Seq Expression	Clc01G14230
Synteny	Clc01G14230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTGTTTGATTATTTTGTTTAACCTGGTGATGAAGAAATTAGGGCCACAAGAAAAATGAGACGACCAAGTGGTGTGGCTGAATTGTTGGGAATCCACAACAATTTTTGGGCATTGGGTTGCCATATTTATGGAGGTCAGTTGTAGACCCAATAATTACACAACAATATTACTCATTCTCTTTGCCTTCAATTTTGCTGTCTAACACTAACTAACTATTTGGTATGGATCTTTCTCCACTATTTTAATACTTTCACTCTATTGTGTATGAATTCTCTTGGTTTCCATTAGACATTATTACTTTCACATTTTATAAATGTTTCAATACTATTCCAAATTTCTTAGATTTTTCTTTAATGAAAATTGATGATTTGAAATGGCGTGTTAAATAATATACGCAAATGGAGCTAAATTGAGTAATTAGTTAAGGAGATATAGAAAACTGTGAGGTTCGTTGATTTCTTTAATATGAGATTCTCAACAACATGATAGAGCCATGACGTATGTAGTTCACCACACCCACACCTGCATATCAAAGAGGTTTATGTAATTGTACACCACATCATGGTATAATTTTAGGAAGGGGCATAATCCCACCATACGGCAACCAAATTAAATTACTAGGTTCATAGTAGTTTTGAAATGTTTATATGTAAAGGTGATTTTAGTTTGGACAGATTAAATAATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTACGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAAACCCTTTAATTTCTTTCTACCTTCTTCTTTTTAATGGAAGATTTTCCATTAAAAACAGTGATAATAAAATGGCTTTCAACTTCATCCTCTCCTCCCATTCAAGACATCTGTTTAGGGTTACAATTAGTTTCAAACTTTGAATCTTCTTAAACTATTTCAATATATATATTTGTTATTTTCATTCAAATCATGCTTCATTTTGTTTACTTTCAACATATTCGTTTTTGGTTCATTTAAATAATCTTATGCTAATGGAGATGTCATCCGTCTCTCAATTTTTTATCATATAGCTAATGTG

mRNA sequence

CAAGTGTTTGATTATTTTGTTTAACCTGGTGATGAAGAAATTAGGGCCACAAGAAAAATGAGACGACCAAGTGGTGTGGCTGAATTGTTGGGAATCCACAACAATTTTTGGGCATTGGGTTGCCATATTTATGGAGGTCAGTTGTAGACCCAATAATTACACAACAATATTACTCATTCTCTTTGCCTTCAATTTTGCTGTCTAACACTAACTAACTATTTGATTAAATAATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTACGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAAACCCTTTAATTTCTTTCTACCTTCTTCTTTTTAATGGAAGATTTTCCATTAAAAACAGTGATAATAAAATGGCTTTCAACTTCATCCTCTCCTCCCATTCAAGACATCTGTTTAGGGTTACAATTAGTTTCAAACTTTGAATCTTCTTAAACTATTTCAATATATATATTTGTTATTTTCATTCAAATCATGCTTCATTTTGTTTACTTTCAACATATTCGTTTTTGGTTCATTTAAATAATCTTATGCTAATGGAGATGTCATCCGTCTCTCAATTTTTTATCATATAGCTAATGTG

Coding sequence (CDS)

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTACGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Protein sequence

MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS

Homology

[Close]

BLAST of Clc01G14230 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQ 60
          MGETSEEK E  V  EKKEKKDKEKHGE ED      E+K+KKKKEK PADKKDP+KLRQ
Sbjct: 1  MGETSEEKHEGKV--EKKEKKDKEKHGEGED------EEKKKKKKEKNPADKKDPTKLRQ 60

Query: 61 KLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS 95
          KLEKLEAKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 61 KLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of Clc01G14230 vs. NCBI nr
Match: KAG6584261.1 (hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 1   MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPAD 60
           MG TSEEK E  VEK K++KKDKEKH EEE+DD+  K+K         ++K+KK+K+PAD
Sbjct: 1   MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEEDDDHSKKKGKDKDKEEGEKKEKKKKDPAD 60

Query: 61  KKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 93
            KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAE NA P
Sbjct: 61  MKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 100

[Close]

BLAST of Clc01G14230 vs. NCBI nr
Match: XP_022923831.1 (protein PXR1 [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-13
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPAD 60
           MG TSEEK E  VEK K++KKDKEKH EEEDD  KKK K         ++K+KK+K+PAD
Sbjct: 27  MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPAD 86

Query: 61  KKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 93
            KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAE NA P
Sbjct: 87  MKDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of Clc01G14230 vs. NCBI nr
Match: KAG7019857.1 (hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MGETSEEKQESTVEKEKKEKKDKEKHGEEEDD-----------DEKKKEKKEKKKKEKEP 60
           MG TSEEK E  VEK K++KKDKEKH EEE++           D+ K+E ++K+KK+K+P
Sbjct: 1   MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEEEEDDDHGKKKGKDKDKEEAEKKEKKKKDP 60

Query: 61  ADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 93
           AD KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAE NA P
Sbjct: 61  ADMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 102

[Close]

BLAST of Clc01G14230 vs. NCBI nr
Match: XP_022137487.1 (nucleolar protein 58 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   MGETSEEKQ--ESTVEKEKKEKKDKEKHGE-EEDDDEKKKEKKEKKKKEKEPADKKDPSK 60
           MGE SEEK   E   +KEKKEKKDKEKH E E  + EKKKEKKEKKK  K P DKKDP+K
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKK--KNPEDKKDPTK 69

Query: 61  LRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPPSS 96
           LRQKLEKLE KM+ LA+KKEE+LKLL EAE NA    PPPSS
Sbjct: 70  LRQKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of Clc01G14230 vs. ExPASy TrEMBL
Match: A0A0A0LQQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 80/96 (83.33%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MGETSEEKQESTVE-KEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLR 60
          MGETSEEK E  VE KEKKEKKDKEKHGEE +D+EKKK    KKKKEK+PADKKDP+KLR
Sbjct: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKK----KKKKEKDPADKKDPTKLR 60

Query: 61 QKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS 96
          QKLEKLE KMQALAVKKEEILKLLHEAE N PPPSS
Sbjct: 61 QKLEKLEVKMQALAVKKEEILKLLHEAEQN-PPPSS 91

[Close]

BLAST of Clc01G14230 vs. ExPASy TrEMBL
Match: A0A1S3AV24 (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQ 60
          MGETSEEK E  V  EKKEKKDKEKHGE ED      E+K+KKKKEK PADKKDP+KLRQ
Sbjct: 1  MGETSEEKHEGKV--EKKEKKDKEKHGEGED------EEKKKKKKEKNPADKKDPTKLRQ 60

Query: 61 KLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPS 95
          KLEKLEAKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 61 KLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of Clc01G14230 vs. ExPASy TrEMBL
Match: A0A6J1E7S6 (protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-13
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MGETSEEKQESTVEKEKKEKKDKEKHGEEEDDDEKKKEK---------KEKKKKEKEPAD 60
           MG TSEEK E  VEK K++KKDKEKH EEEDD  KKK K         ++K+KK+K+PAD
Sbjct: 27  MGGTSEEKHEGKVEK-KEKKKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPAD 86

Query: 61  KKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPP 93
            KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAE NA P
Sbjct: 87  MKDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of Clc01G14230 vs. ExPASy TrEMBL
Match: A0A6J1C8D9 (nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   MGETSEEKQ--ESTVEKEKKEKKDKEKHGE-EEDDDEKKKEKKEKKKKEKEPADKKDPSK 60
           MGE SEEK   E   +KEKKEKKDKEKH E E  + EKKKEKKEKKK  K P DKKDP+K
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKK--KNPEDKKDPTK 69

Query: 61  LRQKLEKLEAKMQALAVKKEEILKLLHEAEHNA----PPPSS 96
           LRQKLEKLE KM+ LA+KKEE+LKLL EAE NA    PPPSS
Sbjct: 70  LRQKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of Clc01G14230 vs. ExPASy TrEMBL
Match: A0A6J1K499 (protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-12
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MGETSEEKQESTVEKEKK------EKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKD 60
           MG  SEEK E  VEK++K      ++K KEK G+++D + K+ EKKE  KK K+PADKKD
Sbjct: 1   MGGNSEEKHEDKVEKKEKKHEEEGDEKRKEKKGKDKDKEGKEGEKKE--KKPKDPADKKD 60

Query: 61  PSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHN---APPPSS 96
           P+KLRQKLEKLE KMQALAVKKEE+LKLLHEAE N   APPPSS
Sbjct: 61  PTKLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPPSS 102

[Close]

BLAST of Clc01G14230 vs. TAIR 10
Match: AT5G62750.1 (unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48; Bacteria - 2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses - 210; Other Eukaryotes - 10954 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 51/100 (51.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 7   EKQESTVEKEKKEKKDKEKH--GEEEDDDEKKKEKKEKK-KKEKEPADKKDPSKLRQKLE 66
           EK+E   +K+KK+K + +K+  GEE +D EKK +KK+KK KKEK P DKKDP KL+ KL+
Sbjct: 25  EKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNPEDKKDPEKLKMKLQ 84

Query: 67  KLEAKMQALAVKKEEILKLLHEAEH--------NAPPPSS 96
           K+E K+QA+ +KK+EI+KL+H+AE         +APPP++
Sbjct: 85  KIEEKIQAMVLKKDEIVKLIHDAEQAKPSTAAVDAPPPTN 124

The following BLAST results are available for this feature:

BLAST of Clc01G14230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437610.1	2.5e-19	80.85	PREDICTED: protein PXR1 [Cucumis melo]	[more]
KAG6584261.1	1.6e-13	68.32	hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923831.1	6.0e-13	69.31	protein PXR1 [Cucurbita moschata]	[more]
KAG7019857.1	1.3e-12	66.02	hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022137487.1	2.3e-12	70.59	nucleolar protein 58 [Momordica charantia]	[more]

BLAST of Clc01G14230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G14230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQQ8	1.9e-20	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1	[more]
A0A1S3AV24	1.2e-19	80.85	protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1	[more]
A0A6J1E7S6	2.9e-13	69.31	protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1	[more]
A0A6J1C8D9	1.1e-12	70.59	nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1	[more]
A0A6J1K499	4.2e-12	65.38	protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1	[more]

BLAST of Clc01G14230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62750.1	1.9e-09	51.00	unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..26
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	COILS	Coil	Coil	coord: 62..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR36812	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 5..93
None	No IPR available	PANTHER	PTHR36812:SF2	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 5..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G14230.1	Clc01G14230.1	mRNA