Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGTAAAGAAGCAAGATCCACCGAATCGCTCTGCGAGAAGTCCATGTTGTTGGTAGCCAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCAAAGACGGCGAATGAAGCAACCGCTGGATCTACGGCCACCAGACGCCGATCGAGAGGAAATCCGGCGGCGACGCCTCTGATTCCGGGGAGTAGACGGCTACAGGAGCCGCAGAGCCGAGCGAAGCCGATCTATGTGACGAAACCGGGTGGAGGCGGCTTCCAAATCGGGCATGGATCGCCGAGGTATTCGTCGTCTTCTTCTTCGGCTTCTTCGTATGTGATTCAGGAAGAGAGCGATTTTGATGAGGCGAATGTGGATGGTTGGGCGTCTGAGTACATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACCATGAAGAAACCGCATTCAATGGCTAAAAGTCGCCTTCGTAGAGCTAATTCCTCTGTTCTAAATTAG
mRNA sequence
ATGATCGGTAAAGAAGCAAGATCCACCGAATCGCTCTGCGAGAAGTCCATGTTGTTGGTAGCCAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCAAAGACGGCGAATGAAGCAACCGCTGGATCTACGGCCACCAGACGCCGATCGAGAGGAAATCCGGCGGCGACGCCTCTGATTCCGGGGAGTAGACGGCTACAGGAGCCGCAGAGCCGAGCGAAGCCGATCTATGTGACGAAACCGGGTGGAGGCGGCTTCCAAATCGGGCATGGATCGCCGAGGTATTCGTCGTCTTCTTCTTCGGCTTCTTCGTATGTGATTCAGGAAGAGAGCGATTTTGATGAGGCGAATGTGGATGGTTGGGCGTCTGAGTACATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACCATGAAGAAACCGCATTCAATGGCTAAAAGTCGCCTTCGTAGAGCTAATTCCTCTGTTCTAAATTAG
Coding sequence (CDS)
ATGATCGGTAAAGAAGCAAGATCCACCGAATCGCTCTGCGAGAAGTCCATGTTGTTGGTAGCCAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCAAAGACGGCGAATGAAGCAACCGCTGGATCTACGGCCACCAGACGCCGATCGAGAGGAAATCCGGCGGCGACGCCTCTGATTCCGGGGAGTAGACGGCTACAGGAGCCGCAGAGCCGAGCGAAGCCGATCTATGTGACGAAACCGGGTGGAGGCGGCTTCCAAATCGGGCATGGATCGCCGAGGTATTCGTCGTCTTCTTCTTCGGCTTCTTCGTATGTGATTCAGGAAGAGAGCGATTTTGATGAGGCGAATGTGGATGGTTGGGCGTCTGAGTACATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACCATGAAGAAACCGCATTCAATGGCTAAAAGTCGCCTTCGTAGAGCTAATTCCTCTGTTCTAAATTAG
Protein sequence
MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLIPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN
Homology
BLAST of Clc01G13970 vs. NCBI nr
Match:
TYJ99125.1 (hypothetical protein E5676_scaffold248G003300 [Cucumis melo var. makuwa])
HSP 1 Score: 256.1 bits (653), Expect = 2.0e-64
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAGSTATRRRSRGNPAATPL 60
MI KE+RSTESLCEKSMLLVANLIKLSSSISFAKTA NEATAGS TRRRS GNPAATPL
Sbjct: 1 MIRKESRSTESLCEKSMLLVANLIKLSSSISFAKTANNEATAGSPTTRRRSGGNPAATPL 60
Query: 61 IPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEAN 120
IPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG SPRYS+SSSS+ VI EESDFDEAN
Sbjct: 61 IPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSTSSSSS---VIYEESDFDEAN 120
Query: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
VDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 161
BLAST of Clc01G13970 vs. NCBI nr
Match:
KGN64274.1 (hypothetical protein Csa_013446 [Cucumis sativus])
HSP 1 Score: 253.4 bits (646), Expect = 1.3e-63
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAG-STATRRRSRGNPAATP 60
MIGKE+RSTESLCEKSMLLVANLIKLSSSISFA+TA NE TAG ST TRRRS GNPAATP
Sbjct: 1 MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60
Query: 61 LIPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEA 120
LIPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG SPRYSSSSSS+ VI EESDFDE
Sbjct: 61 LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSS---VIYEESDFDEG 120
Query: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
NVDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 162
BLAST of Clc01G13970 vs. NCBI nr
Match:
XP_022954798.1 (uncharacterized protein LOC111456949 [Cucurbita moschata])
HSP 1 Score: 245.0 bits (624), Expect = 4.5e-61
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
MIGKE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A R+SRGNPA TPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60
Query: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSS-SSASSYVIQEESDFDEANVD 120
PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS S S SSY+I+EESDF EANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120
Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
GWASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 GWASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 159
BLAST of Clc01G13970 vs. NCBI nr
Match:
XP_023541667.1 (uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 244.6 bits (623), Expect = 5.9e-61
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
MIGKE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A R+SRGNPA TPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPATTPLI 60
Query: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS-SSSSASSYVIQEESDFDEANVD 120
PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS SS S SSY+I+EESDF EANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSSPSPSSYLIREESDFIEANVD 120
Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
GWASEYIEKVHKNRK+ ++ST KKP+ +A+SRLRRA+S+
Sbjct: 121 GWASEYIEKVHKNRKNLDESTAKKPYPIAESRLRRASSA 159
BLAST of Clc01G13970 vs. NCBI nr
Match:
XP_022994676.1 (uncharacterized protein LOC111490318 [Cucurbita maxima])
HSP 1 Score: 240.7 bits (613), Expect = 8.5e-60
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
MI KE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A R+SRGNPA TPLI
Sbjct: 1 MISKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPAKTPLI 60
Query: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDG 120
PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY SS S SSY+I+EESDF EANVDG
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY--SSPSPSSYLIREESDFIEANVDG 120
Query: 121 WASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
WASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 WASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 156
BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match:
A0A5D3BLA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003300 PE=4 SV=1)
HSP 1 Score: 256.1 bits (653), Expect = 9.5e-65
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAGSTATRRRSRGNPAATPL 60
MI KE+RSTESLCEKSMLLVANLIKLSSSISFAKTA NEATAGS TRRRS GNPAATPL
Sbjct: 1 MIRKESRSTESLCEKSMLLVANLIKLSSSISFAKTANNEATAGSPTTRRRSGGNPAATPL 60
Query: 61 IPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEAN 120
IPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG SPRYS+SSSS+ VI EESDFDEAN
Sbjct: 61 IPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSTSSSSS---VIYEESDFDEAN 120
Query: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
VDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 161
BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match:
A0A0A0LTD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1)
HSP 1 Score: 253.4 bits (646), Expect = 6.1e-64
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAG-STATRRRSRGNPAATP 60
MIGKE+RSTESLCEKSMLLVANLIKLSSSISFA+TA NE TAG ST TRRRS GNPAATP
Sbjct: 1 MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60
Query: 61 LIPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEA 120
LIPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG SPRYSSSSSS+ VI EESDFDE
Sbjct: 61 LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSS---VIYEESDFDEG 120
Query: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
NVDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 162
BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match:
A0A6J1GS37 (uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC111456949 PE=4 SV=1)
HSP 1 Score: 245.0 bits (624), Expect = 2.2e-61
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
MIGKE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A R+SRGNPA TPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60
Query: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSS-SSASSYVIQEESDFDEANVD 120
PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS S S SSY+I+EESDF EANVD
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120
Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
GWASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 GWASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 159
BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match:
A0A6J1JZU4 (uncharacterized protein LOC111490318 OS=Cucurbita maxima OX=3661 GN=LOC111490318 PE=4 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
MI KE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A R+SRGNPA TPLI
Sbjct: 1 MISKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPAKTPLI 60
Query: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDG 120
PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY SS S SSY+I+EESDF EANVDG
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY--SSPSPSSYLIREESDFIEANVDG 120
Query: 121 WASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
WASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 WASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 156
BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match:
A0A6J1E7B0 (uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC111431459 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 0
Query: 1 MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
MIGKE RS+ESLCEKSMLL+ANLIKLSSSISFA TANEATAG++ATR RS GN AATPLI
Sbjct: 1 MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRERSGGNSAATPLI 60
Query: 61 PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDG 120
PGSRRLQEPQSRAKPIYVTKPGGG FQI HGSPRYS SSSS+SS VI ESD DEANVDG
Sbjct: 61 PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSNVIPGESDCDEANVDG 120
Query: 121 WASEYIEKVHKNRKDFEQ-STMKKPHSMAKSRLRRANS 158
WAS+YIE+VH+NRKDF+Q T +KP+SM K+RLR A S
Sbjct: 121 WASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYJ99125.1 | 2.0e-64 | 89.02 | hypothetical protein E5676_scaffold248G003300 [Cucumis melo var. makuwa] | [more] |
KGN64274.1 | 1.3e-63 | 88.48 | hypothetical protein Csa_013446 [Cucumis sativus] | [more] |
XP_022954798.1 | 4.5e-61 | 84.28 | uncharacterized protein LOC111456949 [Cucurbita moschata] | [more] |
XP_023541667.1 | 5.9e-61 | 84.28 | uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo] | [more] |
XP_022994676.1 | 8.5e-60 | 83.54 | uncharacterized protein LOC111490318 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BLA2 | 9.5e-65 | 89.02 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LTD3 | 6.1e-64 | 88.48 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1 | [more] |
A0A6J1GS37 | 2.2e-61 | 84.28 | uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC1114569... | [more] |
A0A6J1JZU4 | 4.1e-60 | 83.54 | uncharacterized protein LOC111490318 OS=Cucurbita maxima OX=3661 GN=LOC111490318... | [more] |
A0A6J1E7B0 | 3.3e-57 | 81.01 | uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC1114314... | [more] |
Match Name | E-value | Identity | Description | |