Clc01G13970 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G13970
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSerine/threonine-protein kinase AtPK2/AtPK19
LocationClcChr01: 26836085 .. 26836570 (-)
RNA-Seq ExpressionClc01G13970
SyntenyClc01G13970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGTAAAGAAGCAAGATCCACCGAATCGCTCTGCGAGAAGTCCATGTTGTTGGTAGCCAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCAAAGACGGCGAATGAAGCAACCGCTGGATCTACGGCCACCAGACGCCGATCGAGAGGAAATCCGGCGGCGACGCCTCTGATTCCGGGGAGTAGACGGCTACAGGAGCCGCAGAGCCGAGCGAAGCCGATCTATGTGACGAAACCGGGTGGAGGCGGCTTCCAAATCGGGCATGGATCGCCGAGGTATTCGTCGTCTTCTTCTTCGGCTTCTTCGTATGTGATTCAGGAAGAGAGCGATTTTGATGAGGCGAATGTGGATGGTTGGGCGTCTGAGTACATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACCATGAAGAAACCGCATTCAATGGCTAAAAGTCGCCTTCGTAGAGCTAATTCCTCTGTTCTAAATTAG

mRNA sequence

ATGATCGGTAAAGAAGCAAGATCCACCGAATCGCTCTGCGAGAAGTCCATGTTGTTGGTAGCCAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCAAAGACGGCGAATGAAGCAACCGCTGGATCTACGGCCACCAGACGCCGATCGAGAGGAAATCCGGCGGCGACGCCTCTGATTCCGGGGAGTAGACGGCTACAGGAGCCGCAGAGCCGAGCGAAGCCGATCTATGTGACGAAACCGGGTGGAGGCGGCTTCCAAATCGGGCATGGATCGCCGAGGTATTCGTCGTCTTCTTCTTCGGCTTCTTCGTATGTGATTCAGGAAGAGAGCGATTTTGATGAGGCGAATGTGGATGGTTGGGCGTCTGAGTACATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACCATGAAGAAACCGCATTCAATGGCTAAAAGTCGCCTTCGTAGAGCTAATTCCTCTGTTCTAAATTAG

Coding sequence (CDS)

ATGATCGGTAAAGAAGCAAGATCCACCGAATCGCTCTGCGAGAAGTCCATGTTGTTGGTAGCCAATTTAATCAAGCTTTCCAGTTCGATTTCTTTCGCAAAGACGGCGAATGAAGCAACCGCTGGATCTACGGCCACCAGACGCCGATCGAGAGGAAATCCGGCGGCGACGCCTCTGATTCCGGGGAGTAGACGGCTACAGGAGCCGCAGAGCCGAGCGAAGCCGATCTATGTGACGAAACCGGGTGGAGGCGGCTTCCAAATCGGGCATGGATCGCCGAGGTATTCGTCGTCTTCTTCTTCGGCTTCTTCGTATGTGATTCAGGAAGAGAGCGATTTTGATGAGGCGAATGTGGATGGTTGGGCGTCTGAGTACATAGAGAAAGTTCATAAGAACAGGAAGGATTTTGAACAATCGACCATGAAGAAACCGCATTCAATGGCTAAAAGTCGCCTTCGTAGAGCTAATTCCTCTGTTCTAAATTAG

Protein sequence

MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLIPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN
Homology
BLAST of Clc01G13970 vs. NCBI nr
Match: TYJ99125.1 (hypothetical protein E5676_scaffold248G003300 [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 2.0e-64
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAGSTATRRRSRGNPAATPL 60
           MI KE+RSTESLCEKSMLLVANLIKLSSSISFAKTA NEATAGS  TRRRS GNPAATPL
Sbjct: 1   MIRKESRSTESLCEKSMLLVANLIKLSSSISFAKTANNEATAGSPTTRRRSGGNPAATPL 60

Query: 61  IPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEAN 120
           IPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG  SPRYS+SSSS+   VI EESDFDEAN
Sbjct: 61  IPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSTSSSSS---VIYEESDFDEAN 120

Query: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
           VDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 161

BLAST of Clc01G13970 vs. NCBI nr
Match: KGN64274.1 (hypothetical protein Csa_013446 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 1.3e-63
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAG-STATRRRSRGNPAATP 60
           MIGKE+RSTESLCEKSMLLVANLIKLSSSISFA+TA NE TAG ST TRRRS GNPAATP
Sbjct: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60

Query: 61  LIPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEA 120
           LIPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG  SPRYSSSSSS+   VI EESDFDE 
Sbjct: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSS---VIYEESDFDEG 120

Query: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
           NVDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 162

BLAST of Clc01G13970 vs. NCBI nr
Match: XP_022954798.1 (uncharacterized protein LOC111456949 [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 4.5e-61
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
           MIGKE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A  R+SRGNPA TPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60

Query: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSS-SSASSYVIQEESDFDEANVD 120
           PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS S  S SSY+I+EESDF EANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120

Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
           GWASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 GWASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 159

BLAST of Clc01G13970 vs. NCBI nr
Match: XP_023541667.1 (uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 5.9e-61
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
           MIGKE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A  R+SRGNPA TPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPATTPLI 60

Query: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS-SSSSASSYVIQEESDFDEANVD 120
           PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS SS S SSY+I+EESDF EANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSSPSPSSYLIREESDFIEANVD 120

Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
           GWASEYIEKVHKNRK+ ++ST KKP+ +A+SRLRRA+S+
Sbjct: 121 GWASEYIEKVHKNRKNLDESTAKKPYPIAESRLRRASSA 159

BLAST of Clc01G13970 vs. NCBI nr
Match: XP_022994676.1 (uncharacterized protein LOC111490318 [Cucurbita maxima])

HSP 1 Score: 240.7 bits (613), Expect = 8.5e-60
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
           MI KE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A  R+SRGNPA TPLI
Sbjct: 1   MISKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPAKTPLI 60

Query: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDG 120
           PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY  SS S SSY+I+EESDF EANVDG
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY--SSPSPSSYLIREESDFIEANVDG 120

Query: 121 WASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
           WASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 WASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 156

BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match: A0A5D3BLA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003300 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.5e-65
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAGSTATRRRSRGNPAATPL 60
           MI KE+RSTESLCEKSMLLVANLIKLSSSISFAKTA NEATAGS  TRRRS GNPAATPL
Sbjct: 1   MIRKESRSTESLCEKSMLLVANLIKLSSSISFAKTANNEATAGSPTTRRRSGGNPAATPL 60

Query: 61  IPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEAN 120
           IPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG  SPRYS+SSSS+   VI EESDFDEAN
Sbjct: 61  IPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSTSSSSS---VIYEESDFDEAN 120

Query: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
           VDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 VDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 161

BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match: A0A0A0LTD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.1e-64
Identity = 146/165 (88.48%), Postives = 150/165 (90.91%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTA-NEATAG-STATRRRSRGNPAATP 60
           MIGKE+RSTESLCEKSMLLVANLIKLSSSISFA+TA NE TAG ST TRRRS GNPAATP
Sbjct: 1   MIGKESRSTESLCEKSMLLVANLIKLSSSISFARTANNEPTAGSSTTTRRRSGGNPAATP 60

Query: 61  LIPGSRRLQEPQSRAKPIYVTKPGGGGFQIGHG--SPRYSSSSSSASSYVIQEESDFDEA 120
           LIPGS+RLQEPQSRAKPIYVTKPGGGGFQIGHG  SPRYSSSSSS+   VI EESDFDE 
Sbjct: 61  LIPGSKRLQEPQSRAKPIYVTKPGGGGFQIGHGSPSPRYSSSSSSS---VIYEESDFDEG 120

Query: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSSVLN 162
           NVDGWASEYIEKVHKNRKDFEQSTMKKP SMAKSR RR NSSVLN
Sbjct: 121 NVDGWASEYIEKVHKNRKDFEQSTMKKPKSMAKSRFRRTNSSVLN 162

BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match: A0A6J1GS37 (uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC111456949 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-61
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
           MIGKE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A  R+SRGNPA TPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAGRQSRGNPATTPLI 60

Query: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSS-SSASSYVIQEESDFDEANVD 120
           PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSS S  S SSY+I+EESDF EANVD
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSPSLPSPSSYLIREESDFVEANVD 120

Query: 121 GWASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
           GWASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 GWASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 159

BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match: A0A6J1JZU4 (uncharacterized protein LOC111490318 OS=Cucurbita maxima OX=3661 GN=LOC111490318 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 132/158 (83.54%), Postives = 144/158 (91.14%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
           MI KE RS+ESLCEKSMLLVANLIKLSSSISFAKTANE TAGS A  R+SRGNPA TPLI
Sbjct: 1   MISKERRSSESLCEKSMLLVANLIKLSSSISFAKTANEVTAGSRAAVRQSRGNPAKTPLI 60

Query: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDG 120
           PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY  SS S SSY+I+EESDF EANVDG
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRY--SSPSPSSYLIREESDFIEANVDG 120

Query: 121 WASEYIEKVHKNRKDFEQSTMKKPHSMAKSRLRRANSS 159
           WASEYIEKVHKNRK+ ++ST KKP+S+A+SRLRRA+S+
Sbjct: 121 WASEYIEKVHKNRKNLDESTAKKPYSIAESRLRRASSA 156

BLAST of Clc01G13970 vs. ExPASy TrEMBL
Match: A0A6J1E7B0 (uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC111431459 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.3e-57
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 0

Query: 1   MIGKEARSTESLCEKSMLLVANLIKLSSSISFAKTANEATAGSTATRRRSRGNPAATPLI 60
           MIGKE RS+ESLCEKSMLL+ANLIKLSSSISFA TANEATAG++ATR RS GN AATPLI
Sbjct: 1   MIGKERRSSESLCEKSMLLLANLIKLSSSISFANTANEATAGTSATRERSGGNSAATPLI 60

Query: 61  PGSRRLQEPQSRAKPIYVTKPGGGGFQIGHGSPRYSSSSSSASSYVIQEESDFDEANVDG 120
           PGSRRLQEPQSRAKPIYVTKPGGG FQI HGSPRYS SSSS+SS VI  ESD DEANVDG
Sbjct: 61  PGSRRLQEPQSRAKPIYVTKPGGGSFQISHGSPRYSPSSSSSSSNVIPGESDCDEANVDG 120

Query: 121 WASEYIEKVHKNRKDFEQ-STMKKPHSMAKSRLRRANS 158
           WAS+YIE+VH+NRKDF+Q  T +KP+SM K+RLR A S
Sbjct: 121 WASKYIERVHRNRKDFDQYPTNEKPYSMGKNRLRTATS 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99125.12.0e-6489.02hypothetical protein E5676_scaffold248G003300 [Cucumis melo var. makuwa][more]
KGN64274.11.3e-6388.48hypothetical protein Csa_013446 [Cucumis sativus][more]
XP_022954798.14.5e-6184.28uncharacterized protein LOC111456949 [Cucurbita moschata][more]
XP_023541667.15.9e-6184.28uncharacterized protein LOC111801757 [Cucurbita pepo subsp. pepo][more]
XP_022994676.18.5e-6083.54uncharacterized protein LOC111490318 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BLA29.5e-6589.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTD36.1e-6488.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045720 PE=4 SV=1[more]
A0A6J1GS372.2e-6184.28uncharacterized protein LOC111456949 OS=Cucurbita moschata OX=3662 GN=LOC1114569... [more]
A0A6J1JZU44.1e-6083.54uncharacterized protein LOC111490318 OS=Cucurbita maxima OX=3661 GN=LOC111490318... [more]
A0A6J1E7B03.3e-5781.01uncharacterized protein LOC111431459 OS=Cucurbita moschata OX=3662 GN=LOC1114314... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G13970.1Clc01G13970.1mRNA