Clc01G13535 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G13535
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
LocationClcChr01: 26065303 .. 26065818 (+)
RNA-Seq ExpressionClc01G13535
SyntenyClc01G13535
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGGTAGCCACAATAGAGTGTAGAGTTATATTTTTAAAGTGATAGTATACAGCGATTGCTAAGATGTTGAGTAATGCATGCAACGGATTTAGTTGGAACGAGGACTTTAAGTGTGTAGACGCTGAGCAGGACATGTTTAGTCTATAGGTCTGGGTAAGACCACTTTATAATATACTATGACAATTGATATAATTTTTACTAACATATTATATCCATTTGTAGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

mRNA sequence

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

Coding sequence (CDS)

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

Protein sequence

MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN
Homology
BLAST of Clc01G13535 vs. NCBI nr
Match: XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 62/148 (41.89%), Postives = 77/148 (52.03%), Query Frame = 0

Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGI-------------------- 60
           +ESLLQLV++GW AD  TFKP YLQQLQ L  EK+P+C I                    
Sbjct: 21  VESLLQLVETGWQADKETFKPGYLQQLQCLFTEKIPSCSIRLSTIECKVRFLKRQYCAIV 80

Query: 61  ------------------------------GSHPNVKGMRHKPLPHYDDLSIVFGRDKAI 99
                                          SHPNVKG+RHKP PH D+LSIVFG+D+A 
Sbjct: 81  EMLSNACNGFGWNDEFKCVQVEKEVFDVWVWSHPNVKGLRHKPFPHCDELSIVFGKDRAT 140

BLAST of Clc01G13535 vs. NCBI nr
Match: XP_038895852.1 (uncharacterized protein LOC120084021 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 0

Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
           ME+LL LV++GW +DNGTF+P YLQ L+R+LHEKV  C +                    
Sbjct: 21  MEALLYLVETGWRSDNGTFQPGYLQHLERILHEKVLECALNQNTIECKVRSLKKQYNAVS 80

Query: 61  ------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYE 98
                             SHPN KGM +K  PHYDDLS VFG+D+A+G S + P   A  
Sbjct: 81  EMLSQSGFNWNEEFKCVQSHPNAKGMWNKSFPHYDDLSTVFGKDRAVGQSSENPYMMATN 140

BLAST of Clc01G13535 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 53/146 (36.30%), Postives = 70/146 (47.95%), Query Frame = 0

Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
           +E+LL LV++GW +DNGTF+P YLQ L+R+LHEKVP C +                    
Sbjct: 21  VEALLYLVETGWRSDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECKVRSLKKQYNIVS 80

Query: 61  -----------------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 98
                                        SHPN K M +KP PHYDD S VFG+D+ +G 
Sbjct: 81  EMLSQSGFDWNEEFKCVQVEREIFDLWVLSHPNAKRMWNKPFPHYDDFSTVFGKDRVVGK 140

BLAST of Clc01G13535 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = 0

Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNC---------------------- 60
           +E+LL LV++GW  DNGTF+P YLQ L+++LHEKVP C                      
Sbjct: 67  VEALLYLVETGWRFDNGTFRPGYLQHLEQILHEKVPGCALNHNTIECKVRSLKKQYNAVS 126

Query: 61  ------GIG--------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 93
                 G+G                    SHPN K M +KP PHYDDLS +FG+D+A+G 
Sbjct: 127 EMLSQSGLGWNEEFKCVHVEREIFDLWVWSHPNAKRMWNKPFPHYDDLSTIFGKDRAVGQ 186

BLAST of Clc01G13535 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 53/146 (36.30%), Postives = 68/146 (46.58%), Query Frame = 0

Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
           +E+LL LVD+GW +DNGTF+  YLQ L+R+ HEKV  C +                    
Sbjct: 59  VEALLYLVDTGWRSDNGTFRLEYLQHLERIHHEKVLGCALNQNTIECKVRSLKKQCNAVS 118

Query: 61  -----------------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 98
                                        SHPN KGM +KP PHYDDLS VFG+ KA+G 
Sbjct: 119 EMLSQSGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPFPHYDDLSTVFGKYKAVGQ 178

BLAST of Clc01G13535 vs. ExPASy TrEMBL
Match: A0A6P5NGC3 (uncharacterized protein LOC110279295 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC110279295 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 1  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDL 60
          +E L++L  + W  DNGTFK  Y + L+++LHEK+P C + SHPN  G+ +KP PH++ L
Sbjct: 25 VECLVELSTTSWKCDNGTFKSGYEKHLEKMLHEKIPGCDLKSHPNANGLYNKPFPHFEKL 84

Query: 61 SIVFGRDKAIGDSCQ 76
           I FGRD+A G + +
Sbjct: 85 GIAFGRDRAQGGNAE 99

BLAST of Clc01G13535 vs. ExPASy TrEMBL
Match: A0A5A7V4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001290 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 1  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
          +E L++LV   GW +DNGTF+P Y+ QL R++ EK+P C   SHP  KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGC--QSHPAAKGLLNKPFPYYDE 80

Query: 61 LSIVFGRDKAIGDSCQTPLD 80
          L+ VFGRD+A G   +T  D
Sbjct: 81 LTYVFGRDRATGRFAETFAD 98

BLAST of Clc01G13535 vs. ExPASy TrEMBL
Match: A0A5A7T5F8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00400 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
          +E L++LV   GW +DNGTF P YL QL R++ EK+P C   SHP  KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFCPGYLAQLVRMMVEKLPGC--QSHPAAKGLLNKPFPYYDE 80

Query: 61 LSIVFGRDKAIGDSCQTPLD 80
          L+ VFGRD+A G   +T  D
Sbjct: 81 LTYVFGRDRATGRFTETFAD 98

BLAST of Clc01G13535 vs. ExPASy TrEMBL
Match: A0A5D3DTF3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00110 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 1   MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGI---GSHPNVKGMRHKPLPH 60
           M+ L++LV   GW +DNGTF+P YL QL  ++ EK+P C +    SH   KG+  KP P+
Sbjct: 21  MKCLMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTSHRTAKGLLSKPFPY 80

Query: 61  YDDLSIVFGRDKAIGDSCQTPLDQAYETND 87
           YD+L+ VFGRD+A G   +T  D  +   D
Sbjct: 81  YDELTYVFGRDRATGQFAETFADMGFNEPD 110

BLAST of Clc01G13535 vs. ExPASy TrEMBL
Match: A0A5D3BCA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00630 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
          +E L++LV   GW +DNGTF P YL QL R++ EK+P C   SHP  KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGC--QSHPAAKGLLNKPFPYYDE 80

Query: 61 LSIVFGRDKAIGDSCQTPLD 80
          L+ VFGRD+  G   +T  D
Sbjct: 81 LTYVFGRDRTTGRFTETFTD 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889264.11.1e-2241.89uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_038895852.15.2e-2041.48uncharacterized protein LOC120084021 [Benincasa hispida][more]
XP_038902479.11.1e-1736.30uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_038892629.12.1e-1637.14uncharacterized protein At2g29880-like [Benincasa hispida][more]
XP_038895773.14.6e-1636.30uncharacterized protein LOC120083935 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P5NGC38.4e-1646.67uncharacterized protein LOC110279295 isoform X2 OS=Arachis duranensis OX=130453 ... [more]
A0A5A7V4P89.3e-1550.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T5F82.7e-1451.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTF33.5e-1444.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCA96.1e-1450.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..98
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 41..87
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..40
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..40
coord: 41..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G13535.1Clc01G13535.1mRNA