Clc01G12920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G12920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	BHLH domain-containing protein
Location	ClcChr01: 24661784 .. 24662622 (-)
RNA-Seq Expression	Clc01G12920
Synteny	Clc01G12920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCCTGGGAATAATGCTGAAACTTCTTCTTCTTCTTCTTTGAAATTAGATCGCAAAACTATCGAGAAAAATAGAAGAATTCTTATGAAATCTCTCTGTTCTAAGCTTTTTAATCTTGTTCCTCCTTCCCATTTCAAAATCTCTAAGGTCCTCTCTCTCTCTCTTTTTCCTCAAACTCCATCTCTCACCGTTCGTTAAACAATATATACATGTTTCAGTGCTTAATTAACATTTAAGCTTAATTCCCTTTCCAATTTAGTTAATAATGTTGTTTGTTTTCTTGTTTCACAGGAGTTGTTGTCGCAACAAAATCAAATCTCTTATGTAATTGCTTACATCAATGAATTGAAAGAAAGAGTGGAGAATTTGGGGAAAAGGAAACAAGCTTTACAATTACGAAACCATTCTCATAATCATAACAATCATCAAGCAGCCGATGATCTTGATAGGGTTGCCAAAAGGATGATAGTTAATAATGATGATCTTACTCTTACATTGCCAGTGGTTGAGTTAAGAGATTTAGACAATGGCATTGTTCACATATTGCTAATTAGTAGCCTCAATAGAACCTTCATGCTCCACCAAATTATTGGTGTCGTCGAAGAGGAAGGCGGCGAGGTCGTCAACGCTAGCTTGTCCACAATTGGCAACAAAGTCTTTTACTCTCTCCACATTGAAGTAAGTTAATAACACTTGAAAACTCCTTTTAAACAAACTTAACATGACGTATGTACTTATATAATCTTGTAATTTTGCAGGCAAAAATTTCGAGAGTTGGAATAGAGACTTCGAGAATTCAACAAAGATTGTTGAACTTAGTATCCCGAAATTAA

mRNA sequence

ATGGCCAAGCCTGGGAATAATGCTGAAACTTCTTCTTCTTCTTCTTTGAAATTAGATCGCAAAACTATCGAGAAAAATAGAAGAATTCTTATGAAATCTCTCTGTTCTAAGCTTTTTAATCTTGTTCCTCCTTCCCATTTCAAAATCTCTAAGGAGTTGTTGTCGCAACAAAATCAAATCTCTTATGTAATTGCTTACATCAATGAATTGAAAGAAAGAGTGGAGAATTTGGGGAAAAGGAAACAAGCTTTACAATTACGAAACCATTCTCATAATCATAACAATCATCAAGCAGCCGATGATCTTGATAGGGTTGCCAAAAGGATGATAGTTAATAATGATGATCTTACTCTTACATTGCCAGTGGTTGAGTTAAGAGATTTAGACAATGGCATTGTTCACATATTGCTAATTAGTAGCCTCAATAGAACCTTCATGCTCCACCAAATTATTGGTGTCGTCGAAGAGGAAGGCGGCGAGGTCGTCAACGCTAGCTTGTCCACAATTGGCAACAAAGTCTTTTACTCTCTCCACATTGAAGCAAAAATTTCGAGAGTTGGAATAGAGACTTCGAGAATTCAACAAAGATTGTTGAACTTAGTATCCCGAAATTAA

Coding sequence (CDS)

ATGGCCAAGCCTGGGAATAATGCTGAAACTTCTTCTTCTTCTTCTTTGAAATTAGATCGCAAAACTATCGAGAAAAATAGAAGAATTCTTATGAAATCTCTCTGTTCTAAGCTTTTTAATCTTGTTCCTCCTTCCCATTTCAAAATCTCTAAGGAGTTGTTGTCGCAACAAAATCAAATCTCTTATGTAATTGCTTACATCAATGAATTGAAAGAAAGAGTGGAGAATTTGGGGAAAAGGAAACAAGCTTTACAATTACGAAACCATTCTCATAATCATAACAATCATCAAGCAGCCGATGATCTTGATAGGGTTGCCAAAAGGATGATAGTTAATAATGATGATCTTACTCTTACATTGCCAGTGGTTGAGTTAAGAGATTTAGACAATGGCATTGTTCACATATTGCTAATTAGTAGCCTCAATAGAACCTTCATGCTCCACCAAATTATTGGTGTCGTCGAAGAGGAAGGCGGCGAGGTCGTCAACGCTAGCTTGTCCACAATTGGCAACAAAGTCTTTTACTCTCTCCACATTGAAGCAAAAATTTCGAGAGTTGGAATAGAGACTTCGAGAATTCAACAAAGATTGTTGAACTTAGTATCCCGAAATTAA

Protein sequence

MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIETSRIQQRLLNLVSRN

Homology

[Close]

BLAST of Clc01G12920 vs. NCBI nr
Match: XP_008438283.1 (PREDICTED: uncharacterized protein LOC103483440 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-60
Identity = 136/194 (70.10%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 11  SSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINEL 70
           +SSSS +LDRKT+EKNRR  MKSLCS LFNLVPPSHFKI KEL+SQQNQI +VIAYINEL
Sbjct: 10  TSSSSAELDRKTMEKNRRSHMKSLCSNLFNLVPPSHFKIPKELISQQNQICHVIAYINEL 69

Query: 71  KERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDN 130
           KERVENL KRKQAL+L+ HS +H + QA             NN+D  +TLP++E+ DL N
Sbjct: 70  KERVENLEKRKQALRLQTHS-SHIHDQAN------------NNND--VTLPIIEINDLGN 129

Query: 131 GIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIET 190
            IVHI+LISS+NR+FMLHQII V+EEEGG+VVNA LSTIGNKVF+SLHIEAKISR+GIET
Sbjct: 130 DIVHIMLISSVNRSFMLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIET 188

Query: 191 SRIQQRLLNLVSRN 205
           SR+++RL+NLV +N
Sbjct: 190 SRVKRRLVNLVYQN 188

[Close]

BLAST of Clc01G12920 vs. NCBI nr
Match: XP_022994121.1 (transcription factor bHLH168-like [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 2.7e-55
Identity = 128/201 (63.68%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           MAKPGNN      +S KLDRKT+EKNRRI MKSLCSKLF+LVP SH+KISK+LLSQQ QI
Sbjct: 30  MAKPGNN----GGASFKLDRKTVEKNRRIHMKSLCSKLFDLVPSSHYKISKDLLSQQTQI 89

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           SYVIAYINELKERVE+L KRK+ALQL+ HS                 ++  +ND    T 
Sbjct: 90  SYVIAYINELKERVESLEKRKEALQLQIHS-----------------QLSTSNDS---TF 149

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIE 180
           P+VE+++L +GIVH+ LISS++R  ML++II V+EEEGGEVV+AS ST+G+K+F+SLHIE
Sbjct: 150 PIVEVKELCSGIVHVTLISSVHRNVMLNEIIVVIEEEGGEVVSASFSTLGDKIFHSLHIE 206

Query: 181 AKISRVGIETSRIQQRLLNLV 202
           AKISRVGIETSRI++RL NL+
Sbjct: 210 AKISRVGIETSRIEKRLENLI 206

[Close]

BLAST of Clc01G12920 vs. NCBI nr
Match: XP_031737508.1 (transcription factor bHLH162-like [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 5.2e-54
Identity = 138/238 (57.98%), Postives = 163/238 (68.49%), Query Frame = 0


Query: 7   NAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISK--------------- 66
           + ETSSSS  KLDRKTIEKNRRI MKSLCS LFNL+PPSHFKI K               
Sbjct: 6   HGETSSSS--KLDRKTIEKNRRIHMKSLCSNLFNLLPPSHFKIPKVDLSLSLNFLIIPVI 65

Query: 67  ----------------------------ELLSQQNQISYVIAYINELKERVENLGKRKQA 126
                                       EL+SQQNQI YVI YINELKERV+NL KRKQA
Sbjct: 66  YLKTNIWVMRYINVLDVHACIFYLFVLQELISQQNQICYVITYINELKERVKNLEKRKQA 125

Query: 127 LQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNGIVHILLISSLNR 186
           LQL+ HS +H ++QA +         IVN+    +T P++E+ DL N I+HI+LISSLNR
Sbjct: 126 LQLQTHS-SHVHNQANN---------IVND----VTWPLIEINDLGNDIIHIVLISSLNR 185

Query: 187 TFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIETSRIQQRLLNLV 202
           +F LHQII V+EEEGG+VVNASLSTIGNKVF+SLHIEAKISR+GIETSR+++RL+NLV
Sbjct: 186 SFTLHQIISVIEEEGGQVVNASLSTIGNKVFHSLHIEAKISRIGIETSRVKRRLMNLV 227

[Close]

BLAST of Clc01G12920 vs. NCBI nr
Match: XP_023542199.1 (transcription factor bHLH168-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.5 bits (563), Expect = 6.8e-54
Identity = 126/201 (62.69%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           MAKPG        +S KLDRKT+EKNRRI MKSLCSKLFNLVP SH+KISK+LLSQQ QI
Sbjct: 1   MAKPG----IDGGASFKLDRKTVEKNRRIHMKSLCSKLFNLVPSSHYKISKDLLSQQTQI 60

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           SYVIAYINELKERVE+L K+K+ALQL+ HS                 ++  ++D    T 
Sbjct: 61  SYVIAYINELKERVESLEKKKEALQLQIHS-----------------QLPTSSDS---TF 120

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIE 180
           P+VE+R+L +GIVH+ LISS++R  ML++IIGVVEEEGGEVV+AS ST+G+KVF+SLHIE
Sbjct: 121 PIVEVRELCSGIVHVTLISSVDRNVMLNEIIGVVEEEGGEVVSASFSTLGDKVFHSLHIE 177

Query: 181 AKISRVGIETSRIQQRLLNLV 202
           AKI RVGIETSR+++RL +L+
Sbjct: 181 AKIPRVGIETSRVEKRLKHLI 177

[Close]

BLAST of Clc01G12920 vs. NCBI nr
Match: XP_022954432.1 (transcription factor bHLH168-like [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-53
Identity = 126/201 (62.69%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           MAKPG        +S+KLDRK +EKNRRI MKSLCSKLFNLVP SH+KISK+LLSQQ QI
Sbjct: 1   MAKPG----IDGGASIKLDRKIVEKNRRIHMKSLCSKLFNLVPSSHYKISKDLLSQQTQI 60

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           SYVIAYI ELKERVE+L KRK+ALQL+ HS                 ++  ++D    T 
Sbjct: 61  SYVIAYIKELKERVESLEKRKEALQLQIHS-----------------QLPTSSDS---TF 120

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIE 180
           P+VE+R+L +GIVH+ LISS++R  ML++IIGVVEEEGGEVV+AS ST+G+KVF+SLHIE
Sbjct: 121 PIVEVRELCSGIVHVTLISSVDRNVMLNEIIGVVEEEGGEVVSASFSTLGDKVFHSLHIE 177

Query: 181 AKISRVGIETSRIQQRLLNLV 202
           AKISRVGIETSR+++RL +L+
Sbjct: 181 AKISRVGIETSRVEKRLKHLI 177

[Close]

BLAST of Clc01G12920 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-14
Identity = 60/192 (31.25%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 12  SSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINELK 71
           S+SSL+  R   EK RR+ MK L S L + V P+      +L+ Q       ++Y+ +LK
Sbjct: 11  SASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPVPQLIDQ------AVSYMIQLK 70

Query: 72  ERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNG 131
           E+V  L + K+                     R+    + N  + +  LP + +R LD+ 
Sbjct: 71  EKVNYLNEMKR---------------------RMLGGEVKNRSEGSSLLPKLSIRSLDS- 130

Query: 132 IVHILLISSLN-RTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIET 191
           I+ + L+  LN +  MLH+++ V EEEG +V++A+L  + ++ FY++  +A I R+GI+ 
Sbjct: 131 IIEMNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDP 174

Query: 192 SRIQQRLLNLVS 203
           SRI++RL +++S
Sbjct: 191 SRIEERLRDIIS 174

[Close]

BLAST of Clc01G12920 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 63/198 (31.82%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 8   AETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYI 67
           + +++  S  +DRKT+EKNRR+ MKSL S+L +L+P      S E L+  +Q+     YI
Sbjct: 4   SHSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLP---HHSSTEPLTLPDQLDEAANYI 63

Query: 68  NELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTL--TLPVVEL 127
            +L+  VE   +RK+ L               + L+ V    + ++ D+++   LP +E+
Sbjct: 64  KKLQVNVEKKRERKRNLVATT---------TLEKLNSVGSSSVSSSVDVSVPRKLPKIEI 123

Query: 128 RDLDNGIVHILLISSLNRTFMLHQIIGVVEEE-GGEVVNASLSTIGNKVFYSLHIEAKIS 187
           ++    I HI L++SL   FM  +II V+ EE G E+ +A  S + + VF++LH + +  
Sbjct: 124 QE-TGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH 183

Query: 188 RVGIETSRIQQRLLNLVS 203
             G   S+I +RL  +V+
Sbjct: 184 DYGAR-SQIPERLEKIVN 187

[Close]

BLAST of Clc01G12920 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-11
Identity = 54/190 (28.42%), Postives = 98/190 (51.58%), Query Frame = 0


Query: 12  SSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINELK 71
           +SSSL+  R   EK+RR+ MK L S L + V P+        L   + I    +Y+ +LK
Sbjct: 11  NSSSLREQRNLREKDRRMRMKHLFSILSSHVSPT------RKLPVPHLIDQATSYMIQLK 70

Query: 72  ERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNG 131
           E V  L ++K+ L                      +  + N  + +  LP + +R  D+ 
Sbjct: 71  ENVNYLKEKKRTL---------------------LQGELGNLYEGSFLLPKLSIRSRDST 130

Query: 132 IVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIETS 191
           I   L++    +  MLH+++ + EEEG +V++A+L  + ++  Y++  +A ISR+GI+ S
Sbjct: 131 IEMNLIMDLNMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPS 173

Query: 192 RIQQRLLNLV 202
           RI++R+  ++
Sbjct: 191 RIEERVRKII 173

[Close]

BLAST of Clc01G12920 vs. ExPASy Swiss-Prot
Match: Q0JFZ0 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRO2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.7e-04
Identity = 50/197 (25.38%), Postives = 95/197 (48.22%), Query Frame = 0


Query: 12  SSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPS-HFKISKELLSQQNQISYVIAYINEL 71
           S S  KL     E++RR  +  L S L  L+P + H K     LS    +S V+ YI EL
Sbjct: 65  SGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTK-----LSIPTTVSRVLKYIPEL 124

Query: 72  KERVENLGKRKQALQLRNHSHNH----NNHQAADDLDRVAKRMIVNNDDLTLTLPVVELR 131
           +++VENL ++K+ L   + ++       +   ++ +  +     +N+ ++          
Sbjct: 125 QKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEI---------- 184

Query: 132 DLDNGIVHILLISSLNRTFM-LHQIIGVVEEEGGEVVNASLST-IGNKVFYSLHIEAKIS 191
                +V + L+S++  + + L + I V+E EG   +++S S+  GN+ FYS+H++    
Sbjct: 185 -----MVQVSLLSNVAGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQRSEG 241

Query: 192 RVGIETSRIQQRLLNLV 202
            +  E     +RL  +V
Sbjct: 245 TINEECPAFCERLEKVV 241

[Close]

BLAST of Clc01G12920 vs. ExPASy TrEMBL
Match: A0A1S3AW43 (uncharacterized protein LOC103483440 OS=Cucumis melo OX=3656 GN=LOC103483440 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.2e-61
Identity = 136/194 (70.10%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 11  SSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINEL 70
           +SSSS +LDRKT+EKNRR  MKSLCS LFNLVPPSHFKI KEL+SQQNQI +VIAYINEL
Sbjct: 10  TSSSSAELDRKTMEKNRRSHMKSLCSNLFNLVPPSHFKIPKELISQQNQICHVIAYINEL 69

Query: 71  KERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDN 130
           KERVENL KRKQAL+L+ HS +H + QA             NN+D  +TLP++E+ DL N
Sbjct: 70  KERVENLEKRKQALRLQTHS-SHIHDQAN------------NNND--VTLPIIEINDLGN 129

Query: 131 GIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIET 190
            IVHI+LISS+NR+FMLHQII V+EEEGG+VVNA LSTIGNKVF+SLHIEAKISR+GIET
Sbjct: 130 DIVHIMLISSVNRSFMLHQIISVIEEEGGQVVNAGLSTIGNKVFHSLHIEAKISRIGIET 188

Query: 191 SRIQQRLLNLVSRN 205
           SR+++RL+NLV +N
Sbjct: 190 SRVKRRLVNLVYQN 188

[Close]

BLAST of Clc01G12920 vs. ExPASy TrEMBL
Match: A0A6J1JY79 (transcription factor bHLH168-like OS=Cucurbita maxima OX=3661 GN=LOC111489950 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.3e-55
Identity = 128/201 (63.68%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           MAKPGNN      +S KLDRKT+EKNRRI MKSLCSKLF+LVP SH+KISK+LLSQQ QI
Sbjct: 30  MAKPGNN----GGASFKLDRKTVEKNRRIHMKSLCSKLFDLVPSSHYKISKDLLSQQTQI 89

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           SYVIAYINELKERVE+L KRK+ALQL+ HS                 ++  +ND    T 
Sbjct: 90  SYVIAYINELKERVESLEKRKEALQLQIHS-----------------QLSTSNDS---TF 149

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIE 180
           P+VE+++L +GIVH+ LISS++R  ML++II V+EEEGGEVV+AS ST+G+K+F+SLHIE
Sbjct: 150 PIVEVKELCSGIVHVTLISSVHRNVMLNEIIVVIEEEGGEVVSASFSTLGDKIFHSLHIE 206

Query: 181 AKISRVGIETSRIQQRLLNLV 202
           AKISRVGIETSRI++RL NL+
Sbjct: 210 AKISRVGIETSRIEKRLENLI 206

[Close]

BLAST of Clc01G12920 vs. ExPASy TrEMBL
Match: A0A6J1GQZ4 (transcription factor bHLH168-like OS=Cucurbita moschata OX=3662 GN=LOC111456691 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 5.6e-54
Identity = 126/201 (62.69%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           MAKPG        +S+KLDRK +EKNRRI MKSLCSKLFNLVP SH+KISK+LLSQQ QI
Sbjct: 1   MAKPG----IDGGASIKLDRKIVEKNRRIHMKSLCSKLFNLVPSSHYKISKDLLSQQTQI 60

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           SYVIAYI ELKERVE+L KRK+ALQL+ HS                 ++  ++D    T 
Sbjct: 61  SYVIAYIKELKERVESLEKRKEALQLQIHS-----------------QLPTSSDS---TF 120

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIE 180
           P+VE+R+L +GIVH+ LISS++R  ML++IIGVVEEEGGEVV+AS ST+G+KVF+SLHIE
Sbjct: 121 PIVEVRELCSGIVHVTLISSVDRNVMLNEIIGVVEEEGGEVVSASFSTLGDKVFHSLHIE 177

Query: 181 AKISRVGIETSRIQQRLLNLV 202
           AKISRVGIETSR+++RL +L+
Sbjct: 181 AKISRVGIETSRVEKRLKHLI 177

[Close]

BLAST of Clc01G12920 vs. ExPASy TrEMBL
Match: A0A6J1C669 (transcription factor bHLH162-like OS=Momordica charantia OX=3673 GN=LOC111008798 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 107/173 (61.85%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           MAK G  AET    SLKLDRKTIEKNRR+ MKSLCSKL +L+PPSHFKISK+LLSQQNQI
Sbjct: 1   MAKRG-GAET----SLKLDRKTIEKNRRVHMKSLCSKLVSLIPPSHFKISKDLLSQQNQI 60

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           SYVIAYINELKERVE L K+K+AL+    +H+H++HQA+                   TL
Sbjct: 61  SYVIAYINELKERVEKLEKKKRALEF---THHHHHHQASRSPGGGGS-----------TL 120

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKV 174
           PVVELRDL   ++ ++LIS LNR F+L Q+I +VEEEGG+VVNAS ST+G K+
Sbjct: 121 PVVELRDL-GSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNASFSTLGGKI 153

[Close]

BLAST of Clc01G12920 vs. ExPASy TrEMBL
Match: A0A067KH05 (BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11490 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 95/191 (49.74%), Postives = 131/191 (68.59%), Query Frame = 0


Query: 11  SSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINEL 70
           SS  SLKLDRKT+EKNRRI MK+LC KL +++P  HFK  K++LSQQ+Q+ +  AYI  L
Sbjct: 4   SSRDSLKLDRKTVEKNRRIHMKALCFKLASVIPSQHFKHHKDMLSQQDQLDHAAAYIKNL 63

Query: 71  KERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDN 130
           KER+E L K+K+         N+NN               +N   ++LTLP+ ELRDL N
Sbjct: 64  KERIEKLEKKKERTLGSLSEANNNN--------------AMNEMMMSLTLPMFELRDLGN 123

Query: 131 GIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIET 190
            I  ++LIS   R FMLH++I ++EEEG EVV+AS +T+G+KVF+++H + KISRVG+ET
Sbjct: 124 SI-EVVLISGSKRNFMLHEVITILEEEGAEVVSASYTTVGDKVFHTIHAQVKISRVGVET 179

Query: 191 SRIQQRLLNLV 202
           +R+ QRL  L+
Sbjct: 184 TRVCQRLQELI 179

[Close]

BLAST of Clc01G12920 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-15
Identity = 60/192 (31.25%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 12  SSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINELK 71
           S+SSL+  R   EK RR+ MK L S L + V P+      +L+ Q       ++Y+ +LK
Sbjct: 11  SASSLREQRNLREKERRMRMKHLFSILSSHVSPTRRLPVPQLIDQ------AVSYMIQLK 70

Query: 72  ERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNG 131
           E+V  L + K+                     R+    + N  + +  LP + +R LD+ 
Sbjct: 71  EKVNYLNEMKR---------------------RMLGGEVKNRSEGSSLLPKLSIRSLDS- 130

Query: 132 IVHILLISSLN-RTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIET 191
           I+ + L+  LN +  MLH+++ V EEEG +V++A+L  + ++ FY++  +A I R+GI+ 
Sbjct: 131 IIEMNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDP 174

Query: 192 SRIQQRLLNLVS 203
           SRI++RL +++S
Sbjct: 191 SRIEERLRDIIS 174

[Close]

BLAST of Clc01G12920 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.6e-15
Identity = 63/198 (31.82%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 8   AETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYI 67
           + +++  S  +DRKT+EKNRR+ MKSL S+L +L+P      S E L+  +Q+     YI
Sbjct: 4   SHSNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLP---HHSSTEPLTLPDQLDEAANYI 63

Query: 68  NELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTL--TLPVVEL 127
            +L+  VE   +RK+ L               + L+ V    + ++ D+++   LP +E+
Sbjct: 64  KKLQVNVEKKRERKRNLVATT---------TLEKLNSVGSSSVSSSVDVSVPRKLPKIEI 123

Query: 128 RDLDNGIVHILLISSLNRTFMLHQIIGVVEEE-GGEVVNASLSTIGNKVFYSLHIEAKIS 187
           ++    I HI L++SL   FM  +II V+ EE G E+ +A  S + + VF++LH + +  
Sbjct: 124 QE-TGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH 183

Query: 188 RVGIETSRIQQRLLNLVS 203
             G   S+I +RL  +V+
Sbjct: 184 DYGAR-SQIPERLEKIVN 187

[Close]

BLAST of Clc01G12920 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-12
Identity = 54/190 (28.42%), Postives = 98/190 (51.58%), Query Frame = 0


Query: 12  SSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQISYVIAYINELK 71
           +SSSL+  R   EK+RR+ MK L S L + V P+        L   + I    +Y+ +LK
Sbjct: 11  NSSSLREQRNLREKDRRMRMKHLFSILSSHVSPT------RKLPVPHLIDQATSYMIQLK 70

Query: 72  ERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTLPVVELRDLDNG 131
           E V  L ++K+ L                      +  + N  + +  LP + +R  D+ 
Sbjct: 71  ENVNYLKEKKRTL---------------------LQGELGNLYEGSFLLPKLSIRSRDST 130

Query: 132 IVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLSTIGNKVFYSLHIEAKISRVGIETS 191
           I   L++    +  MLH+++ + EEEG +V++A+L  + ++  Y++  +A ISR+GI+ S
Sbjct: 131 IEMNLIMDLNMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPS 173

Query: 192 RIQQRLLNLV 202
           RI++R+  ++
Sbjct: 191 RIEERVRKII 173

[Close]

BLAST of Clc01G12920 vs. TAIR 10
Match: AT1G10586.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 6.8e-12
Identity = 45/151 (29.80%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 53  LLSQQNQISYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVN 112
           LL     I   ++Y+ +LKE+V  L + K+                     R+    + N
Sbjct: 5   LLPVPQLIDQAVSYMIQLKEKVNYLNEMKR---------------------RMLGGEVKN 64

Query: 113 NDDLTLTLPVVELRDLDNGIVHILLISSLN-RTFMLHQIIGVVEEEGGEVVNASLSTIGN 172
             + +  LP + +R LD+ I+ + L+  LN +  MLH+++ V EEEG +V++A+L  + +
Sbjct: 65  RSEGSSLLPKLSIRSLDS-IIEMNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLND 124

Query: 173 KVFYSLHIEAKISRVGIETSRIQQRLLNLVS 203
           + FY++  +A I R+GI+ SRI++RL +++S
Sbjct: 125 RTFYTIIAQAIICRIGIDPSRIEERLRDIIS 133

[Close]

BLAST of Clc01G12920 vs. TAIR 10
Match: AT3G56970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 47/205 (22.93%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 1   MAKPGNNAETSSSSSLKLDRKTIEKNRRILMKSLCSKLFNLVPPSHFKISKELLSQQNQI 60
           ++  GN  + +     KL+    E++RR  + +L S L + +P S      + LS    +
Sbjct: 57  VSSEGNEIDNNPVVVKKLNHNASERDRRKKINTLFSSLRSCLPASD---QSKKLSIPETV 116

Query: 61  SYVIAYINELKERVENLGKRKQALQLRNHSHNHNNHQAADDLDRVAKRMIVNNDDLTLTL 120
           S  + YI EL+++V+ L ++K+ + +R      +  +  +  D+   + + +       L
Sbjct: 117 SKSLKYIPELQQQVKRLIQKKEEILVR-----VSGQRDFELYDKQQPKAVAS------YL 176

Query: 121 PVVELRDLDNGIVHILLISSLNRTFMLHQIIGVVEEEGGEVVNASLS-TIGNKVFYSLHI 180
             V    L +  V + + SS    F +  ++G +EE+G  +V+ S S + G ++FY+LH+
Sbjct: 177 STVSATRLGDNEVMVQVSSSKIHNFSISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHL 236

Query: 181 EAK-ISRVGIETSRIQQRLLNLVSR 204
           + + +    I    + +R+L L  +
Sbjct: 237 QVENMDDYKINCEELSERMLYLYEK 247

The following BLAST results are available for this feature:

BLAST of Clc01G12920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438283.1	1.3e-60	70.10	PREDICTED: uncharacterized protein LOC103483440 [Cucumis melo]	[more]
XP_022994121.1	2.7e-55	63.68	transcription factor bHLH168-like [Cucurbita maxima]	[more]
XP_031737508.1	5.2e-54	57.98	transcription factor bHLH162-like [Cucumis sativus]	[more]
XP_023542199.1	6.8e-54	62.69	transcription factor bHLH168-like [Cucurbita pepo subsp. pepo]	[more]
XP_022954432.1	1.2e-53	62.69	transcription factor bHLH168-like [Cucurbita moschata]	[more]

BLAST of Clc01G12920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIJ1	2.4e-14	31.25	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]
F4JIJ7	1.2e-13	31.82	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	3.3e-11	28.42	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q0JFZ0	8.7e-04	25.38	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Clc01G12920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AW43	6.2e-61	70.10	uncharacterized protein LOC103483440 OS=Cucumis melo OX=3656 GN=LOC103483440 PE=...	[more]
A0A6J1JY79	1.3e-55	63.68	transcription factor bHLH168-like OS=Cucurbita maxima OX=3661 GN=LOC111489950 PE...	[more]
A0A6J1GQZ4	5.6e-54	62.69	transcription factor bHLH168-like OS=Cucurbita moschata OX=3662 GN=LOC111456691 ...	[more]
A0A6J1C669	1.1e-41	61.85	transcription factor bHLH162-like OS=Momordica charantia OX=3673 GN=LOC111008798...	[more]
A0A067KH05	2.5e-38	49.74	BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11490 PE=4 S...	[more]

BLAST of Clc01G12920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10586.1	1.7e-15	31.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G20970.1	8.6e-15	31.82	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	2.3e-12	28.42	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.2	6.8e-12	29.80	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G56970.1	1.1e-04	22.93	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	PANTHER	PTHR13935:SF52	OS01G0108400 PROTEIN	coord: 14..200
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 15..101 e-value: 2.8E-7 score: 32.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 15..92
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 14..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G12920.2	Clc01G12920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity