Clc01G12870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G12870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	1-deoxy-D-xylulose-5-phosphate synthase
Location	ClcChr01: 24607872 .. 24612508 (+)
RNA-Seq Expression	Clc01G12870
Synteny	Clc01G12870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCATACTTGCCATAAAGTCTCATCAAGTTAGTGGCTTCCATTCCCTTCGGCACTACTGTGTATTGAGATCGGAAACTTGGGTTGCGATTGCGACTTCGATCGTTGAGACGGAACCATGCCTGGACCTGGGCCTCACATGCTCTACGCCATGGGCTCAGGCATGGCTCTGACCACTCTCACCGACGGTCGATTCAGCCCCCACCATACCCTCGTTTACACCCTCAACGCCTTCTTCGGCCCCGACATCGGCTCCTTCTCCGATTGGCTCTCCTCCGTTCTCGGTTTCTCAGCATCTTCCCTTCCCGACGCAATCCATCATCCCCTCTTCTACGTCCTCATTTTGGGTCTTCCTCTCTGCCTCTTCTACTCCTGGCTCTCCTCTTTTCTACTCCACAAGGCCCTCCTCGATTCCGTCTTTGGGGTGAGTCAATTCACTCCACGATTGGCAGATTTAGAAATTCTGTGTTCCATTTTTTGGATCATTGTATTTGTTGTTTGTTACTTGAATCTGCAGAATTGTGTGGATGACGTAATTGGGTCTCTCGATTTTTTTGTGATTGATTATATTTGATTTTCTTTGTTGTAAGATGATTATTAAGTTATGCTCTCGCGTCGATTGATTGCAAGCATGATGATGAATTTGTTAGAACGATGTGGTTTTTTGCTTTTATCTTATGGTTTGAAATTGTGCTGTGAAATATTACTCTTTACTTTCTTCGATTAACGCATTTATGAATATGCTGCTTCTAGTGAAAAGAAATGGAAAATAATGCCATCTTTTAGAAGATTGTCCGAGAGATTTAATCTTCATCCTTGTTCATTTTGCTCTAATGATGTAGGTATCTCTTAATAGAAGGCAATGCTTGTTGTTAATCTCTGCTGGTTCTTTCTCACACTTCTTTCTTGACCATTTGTTTGAGGTAAGCTTTACATCATCAAGAATTTAAATTGCCCCATCACCAAGCTTTCTGCCTCAGTAAGTTCTTTGATCATTTTGAAAAATAAATATTCTTGCTTCGTATATTAATTTGTGACAATACTACTTAGTGGTACATGGGTAAGATGAATAGGATATGTTGGAACAACTACTTTCTTGACCGTCAGGAAGAACAACATCTTTTGTTTCTACTGTTGGAAATTCGCCCCTACAAAACGGAAAGGACAGTTGAGATCAGAGGACATGATGTCGTTTTGGGTTGACAGTGCCATCACAGTAGCGGTTATGATGTCATAAAATTGTTCGAACAGCTTTTCTGATTGACAGCAACAAACAACACGAACTGCAACCGTCAGTAATAAATGACCCGAACAAACCCTGCAAAATTGAAACTTGTGATAGGCTGAGTCGCGGAGCTCGCTCTCTTTAAGACGTTTCGCAGCTCTGTTAGAGTGCAAACAGTTCTTCAAGATACCACGTCATCCCCAGGATAAAATGGTCTTTAACGGTCAACCGAACTTGCCCCTAGATCGGTTGATAATGCTATCACCCTTAATTTTCTCGGAAATGTGAATAAAATAAATTATTTTTGGAAAGAGGATTTTTGTGAAGGAGAATTGGGAGACAAAGGTGTGGGAAGTGAAGATGAGAAGAAGAAGTGAGGAAGAAGCAAGGGGAGGAGGTAGTATATATAGTGCTGATGACCAACGGGCAGATGCGTATGTCTAGGAGGGAACTCGACGACTAATCTCAACCTGACACGTGGAATCACTTTGTTGATTGTTCTCGACCGAACACGTGGACTGAGGTTTTAAAAAAGTGTTAAATAAAAATTCTTTCTTTATTCCACGCCATGTTCGAACGGACGGTGATGGCACGCTTATGGAGATCCTGATAAGCCCAGCTTGGCCTATCTCCTCACCCTTTCTAGAACTCGGGTTCCCCGTTGAGCCCAAAGCCAAAAGGGTAAGAGGGAGTTAATAAAGAGGAGTACCACCCATAAAATAACTGATGTGGGATTTTTTAAAAAACAAAACTTCTTTCTTCAAAACAAAATTTTCCACCAGCAATAAAATTTTTGCAAAGAAAATCTTTTTCCTTAATTAACTCCCACATCGGTTATTTTAAACCTCGGTCCATGTGTTCGGTCGAGAACAGTCAACAAAGTGATTCCACATGTCAGATTGAGATTAGTCGTTGGGTTCCCCTCCTAGACGTACATACACGTTCTTTGGACTGTATGCTTCCACGTGTCAGGCTGGGAGAAAGTAGTGCATTTGACCGTTGGTCACCAGCACTATATATATTGCCTCATCCCCTCACTTCTTTCTCACTTCTTCTTCTCATCTTCCCTACCCACACCTTGTCTCCCAACTCTCCTTTATAAAAATCTTCTTTCCAAAAATAATTTAGTTTTCGAGCAAATTATTAGAAGGGTGTTAGCATTATCAACCGATCTAGGTGCAAGTTCGGTTGACCGTTAAAGGTTGTTTTATCCTGGGGACGACGTGTTATCTTGAAGAACTGCTTGTACTTTGGCAAAGCCGCAAAACGTCTTAAAGAGAGCGAGCTCTACGACTCAGCCTATCACAATTTTCTATTTTGCAGGGTCTGTTCGGGTCATTCGTTACTGACGGTGGCAGTTCGTGCTGTTTGCTGCTGTCAATTAGAGTAGTTGTTCCAACAGGATATTAGTTAGAGGTATTTTGGGTTATTAACTAGTGGTGTTTTAGTTATAAATAAAAGGAGTTGGACACCTTAGGGTGTGTGGTTCATTTTGTTGAAAGTTTTGATTGTGGGACTTTAAGAAAGAGATCAAAAGACTTATTACTATTAGTATATTATAACTTCTCTTGATATTGCAATATATTCCGATCCTTGTGTTCTTTGTGTTTCTTTGAATTTTCTCATTGGGTGGTTTCCTAACATAATGCTGCTAAACTAAGCATCTCCTCTGGTAAAGCACCTTCCGTGAAGAGATGTGATGAGTGTTCAAATAGAAGTTTTCTTATTTTCTAGGAGGGTGCAAGGGAAAATAAATGTGGTAATCTGGTTAATGGTGTTTGAGATCTTTGTTGTTTTAACAAGTTAGTTGAAAATCGTTCACGATGAGATGGGAAGTACAACTGATATATCTTGTCTTTGATAAATCAGTTTGTCAATGTTCAACTCTCTTTAACTCATGTTGTATGGAGTGGGATTGCTCTTTCCTGTTTTATATTGCTCAGAAACTTTTATAATTAAACAAGATGGGTTGTACTATTATATATCTCTATTGCCAAATTTGCAGGAAAATGGGCATTCGTCAATGTACACTTGGATATTGAGCACTGGTTGGTGGGAGAACCGAGCACCAATTAATCCAGATGCTGTTCTCGTTGTTGGATTCTTGTGCACTTGCTTAATTGGCGGCTTTGTATACATTAACAGGTTCTTAAATACCAATTATACTCATTCTATTCATTTACTCCGTGTGCCATTTGAGTTTTTTTTTTAATCTTTAGCATGCCCTTAATATACCATTCATGCTTCTTTTATGAGACAGAGTGAAGTCTGCAAAGTCGATTTCAGAACAATCGTATCAGTCGGTAAAGCTTATCGTAGTTGTAGCTACCCTATATTCCATGTGGTGTGCAAGCCAGATATACTGGGCTAGCCCTCGTCGACCAGCTGTCGGTGAAGAAGCCGACCTTGGAGTTTTAGTGTTTCTGGTTGTCTATTTTTTTCTACCTCATTATCTTTGTATGAAGTCCATGCAACCAAAAGATCTCGAAATCAAACATCTCCCATTGTGATAGATGAGATATTCATTTATATTAGAAAAGTCTCAATTGACAACAGTTCCCTTTTCCCACTTTGACATTACAGCCTACAGTTGAGAAACCACTGAATTTGCTCTAGACTTTAGTCTCGCATAATTTGTTCGCATACATATGATTCTGACTTTCTCATGCATATTTGGAACCCATTGCCAACTTTGCGAATGCAGGAAGACAAAACGCAGCAGTATGGATCTAAACAGCAGAGTTAAACAGCCAATTAGTTAGATCATAGAAGGGGCAAGCATAGAGCATAGGCTTATGAACAAATGTGAGCAAAAGAAAGAAGAAACCACCTCAGAGTTGTAGAACTTGGGGGGTCCTTTTGCAACACCAAAATTTTCTGGATCCAACAGGTTCACTGGCTGTTTGAAGTCGACTGATGGACCGTCGGTTGAACAGAGCATGAACCCGATTGCCCCACTGAGTTTGGATCATTTAGCAGGGGAAAGAAAGGCATTAGAGAGAACTCCAGATTGTGCAGAAGCATAAAAGTAGAGAATTTTGGAAATGAAACAAAGCTTTAAATGGTTGTGGTTGGGTTTGCCTTGGATATGAAGGAACCGAGGTCCAAGCATAGTTTACAGAGCCTTTGAATATGTCACGACAGAGAGTTATGGTATCTTCCATGGCGAAATTGTTGAGCCATATGCTGTCCGCCGGAGTTGACATTACCCCGCCGGGCTTCAAAGCCTTTGCTATTGATTTAAGTAAGTCTTCATTTGAAAGCTCTGTTGCATAAGCCCCTGATATCCATATTCAATTATATAGGTTTTAACTTCACTTTGTATAGTGAAAACAAATATCATGATTGGTACTGTTCGGTTGTCAGATTTTTTTTTTCTTTTTAATCTATTACTATGTGTTTTCATCTTT

mRNA sequence

CTTCTTCATACTTGCCATAAAGTCTCATCAAGTTAGTGGCTTCCATTCCCTTCGGCACTACTGTGTATTGAGATCGGAAACTTGGGTTGCGATTGCGACTTCGATCGTTGAGACGGAACCATGCCTGGACCTGGGCCTCACATGCTCTACGCCATGGGCTCAGGCATGGCTCTGACCACTCTCACCGACGGTCGATTCAGCCCCCACCATACCCTCGTTTACACCCTCAACGCCTTCTTCGGCCCCGACATCGGCTCCTTCTCCGATTGGCTCTCCTCCGTTCTCGGTTTCTCAGCATCTTCCCTTCCCGACGCAATCCATCATCCCCTCTTCTACGTCCTCATTTTGGGTCTTCCTCTCTGCCTCTTCTACTCCTGGCTCTCCTCTTTTCTACTCCACAAGGCCCTCCTCGATTCCGTCTTTGGGGTATCTCTTAATAGAAGGCAATGCTTGTTGTTAATCTCTGCTGGTTCTTTCTCACACTTCTTTCTTGACCATTTGTTTGAGGAAAATGGGCATTCGTCAATGTACACTTGGATATTGAGCACTGGTTGGTGGGAGAACCGAGCACCAATTAATCCAGATGCTGTTCTCGTTGTTGGATTCTTGTGCACTTGCTTAATTGGCGGCTTTGTATACATTAACAGAGTGAAGTCTGCAAAGTCGATTTCAGAACAATCGTATCAGTCGGTAAAGCTTATCGTAGTTGTAGCTACCCTATATTCCATGTGGTGTGCAAGCCAGATATACTGGGCTAGCCCTCGTCGACCAGCTGTCGGTGAAGAAGCCGACCTTGGAGTTTTAGTGTTTCTGGTTGTCTATTTTTTTCTACCTCATTATCTTTGTATGAAGTCCATGCAACCAAAAGATCTCGAAATCAAACATCTCCCATTGTGATAGATGAGATATTCATTTATATTAGAAAAGTCTCAATTGACAACAGTTCCCTTTTCCCACTTTGACATTACAGCCTACAGTTGAGAAACCACTGAATTTGCTCTAGACTTTAGTCTCGCATAATTTGTTCGCATACATATGATTCTGACTTTCTCATGCATATTTGGAACCCATTGCCAACTTTGCGAATGCAGGAAGACAAAACGCAGCAGTATGGATCTAAACAGCAGAGTTAAACAGCCAATTAGTTAGATCATAGAAGGGGCAAGCATAGAGCATAGGCTTATGAACAAATGTGAGCAAAAGAAAGAAGAAACCACCTCAGAGTTGTAGAACTTGGGGGGTCCTTTTGCAACACCAAAATTTTCTGGATCCAACAGGTTCACTGGCTGTTTGAAGTCGACTGATGGACCGTCGGTTGAACAGAGCATGAACCCGATTGCCCCACTGAGTTTGGATCATTTAGCAGGGGAAAGAAAGGCATTAGAGAGAACTCCAGATTGTGCAGAAGCATAAAAGTAGAGAATTTTGGAAATGAAACAAAGCTTTAAATGGTTGTGGTTGGGTTTGCCTTGGATATGAAGGAACCGAGGTCCAAGCATAGTTTACAGAGCCTTTGAATATGTCACGACAGAGAGTTATGGTATCTTCCATGGCGAAATTGTTGAGCCATATGCTGTCCGCCGGAGTTGACATTACCCCGCCGGGCTTCAAAGCCTTTGCTATTGATTTAAGTAAGTCTTCATTTGAAAGCTCTGTTGCATAAGCCCCTGATATCCATATTCAATTATATAGGTTTTAACTTCACTTTGTATAGTGAAAACAAATATCATGATTGGTACTGTTCGGTTGTCAGATTTTTTTTTTCTTTTTAATCTATTACTATGTGTTTTCATCTTT

Coding sequence (CDS)

ATGCCTGGACCTGGGCCTCACATGCTCTACGCCATGGGCTCAGGCATGGCTCTGACCACTCTCACCGACGGTCGATTCAGCCCCCACCATACCCTCGTTTACACCCTCAACGCCTTCTTCGGCCCCGACATCGGCTCCTTCTCCGATTGGCTCTCCTCCGTTCTCGGTTTCTCAGCATCTTCCCTTCCCGACGCAATCCATCATCCCCTCTTCTACGTCCTCATTTTGGGTCTTCCTCTCTGCCTCTTCTACTCCTGGCTCTCCTCTTTTCTACTCCACAAGGCCCTCCTCGATTCCGTCTTTGGGGTATCTCTTAATAGAAGGCAATGCTTGTTGTTAATCTCTGCTGGTTCTTTCTCACACTTCTTTCTTGACCATTTGTTTGAGGAAAATGGGCATTCGTCAATGTACACTTGGATATTGAGCACTGGTTGGTGGGAGAACCGAGCACCAATTAATCCAGATGCTGTTCTCGTTGTTGGATTCTTGTGCACTTGCTTAATTGGCGGCTTTGTATACATTAACAGAGTGAAGTCTGCAAAGTCGATTTCAGAACAATCGTATCAGTCGGTAAAGCTTATCGTAGTTGTAGCTACCCTATATTCCATGTGGTGTGCAAGCCAGATATACTGGGCTAGCCCTCGTCGACCAGCTGTCGGTGAAGAAGCCGACCTTGGAGTTTTAGTGTTTCTGGTTGTCTATTTTTTTCTACCTCATTATCTTTGTATGAAGTCCATGCAACCAAAAGATCTCGAAATCAAACATCTCCCATTGTGA

Protein sequence

MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSASSLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFSHFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSAKSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHYLCMKSMQPKDLEIKHLPL

Homology

[Close]

BLAST of Clc01G12870 vs. NCBI nr
Match: XP_004152468.1 (uncharacterized protein LOC101221499 isoform X1 [Cucumis sativus] >KGN64298.1 hypothetical protein Csa_013362 [Cucumis sativus])

HSP 1 Score: 508.1 bits (1307), Expect = 4.6e-140
Identity = 241/258 (93.41%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMALTTL+DGRFSPHHTL YT+NAFFGPDIGSFSDWLSSVLGFSAS
Sbjct: 1   MPGPGPHMLYAMGSGMALTTLSDGRFSPHHTLFYTINAFFGPDIGSFSDWLSSVLGFSAS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PD IHHP+FY+LILGLPLCLFYSWLSSFLLHK LLDSVFGVSLNRRQCLLLISAGSFS
Sbjct: 61  SVPDVIHHPVFYILILGLPLCLFYSWLSSFLLHKGLLDSVFGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSS YTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINRVKS 
Sbjct: 121 HFFLDHLFEENGHSSTYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRVKSG 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSIS+QSYQSVKL+VVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLV YFFLPHY
Sbjct: 181 KSISKQSYQSVKLMVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVFYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKD E KHLPL
Sbjct: 241 LCIKSMQPKDSETKHLPL 258

[Close]

BLAST of Clc01G12870 vs. NCBI nr
Match: XP_038893660.1 (uncharacterized protein LOC120082528 isoform X1 [Benincasa hispida])

HSP 1 Score: 505.8 bits (1301), Expect = 2.3e-139
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSG ALTTLTDGRFSPHHTL+YT+NAFFGPDIGSFSDWLSSVLGFS S
Sbjct: 1   MPGPGPHMLYAMGSGTALTTLTDGRFSPHHTLIYTVNAFFGPDIGSFSDWLSSVLGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHP+FY+LILGLPLCLFYSWLSSFLL K LL+SV GVSLNRRQCLLLISAGSFS
Sbjct: 61  SVPDAIHHPVFYILILGLPLCLFYSWLSSFLLQKGLLESVSGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSS YTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINR KSA
Sbjct: 121 HFFLDHLFEENGHSSTYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRAKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSIS+QSYQSVKLI+VVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLV YFFLPHY
Sbjct: 181 KSISKQSYQSVKLIIVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVFYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKDLEIKHLPL
Sbjct: 241 LCIKSMQPKDLEIKHLPL 258

[Close]

BLAST of Clc01G12870 vs. NCBI nr
Match: XP_023519820.1 (uncharacterized protein LOC111783152 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 503.1 bits (1294), Expect = 1.5e-138
Identity = 235/258 (91.09%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMAL +L+DGRFSPHHTL+YT+NAFFGPDIGSFS+WLSSVLGFS S
Sbjct: 1   MPGPGPHMLYAMGSGMALMSLSDGRFSPHHTLIYTINAFFGPDIGSFSEWLSSVLGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHP+FY+LILGLPLCLFY+WLSS LLHK LLDSVFGVSLNRRQCLLLISAGSFS
Sbjct: 61  SVPDAIHHPVFYILILGLPLCLFYAWLSSVLLHKGLLDSVFGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAV+V+GFLCTCLIGGFVYINRVKSA
Sbjct: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVMVIGFLCTCLIGGFVYINRVKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSI +QSYQSVKLI+VVATLYSMWCASQIYW +PRRPAVGEEADLGVLVFL VYFFLPHY
Sbjct: 181 KSIPKQSYQSVKLIIVVATLYSMWCASQIYWTNPRRPAVGEEADLGVLVFLFVYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKDLEI+HLPL
Sbjct: 241 LCIKSMQPKDLEIRHLPL 258

[Close]

BLAST of Clc01G12870 vs. NCBI nr
Match: XP_022923863.1 (uncharacterized protein LOC111431454 [Cucurbita moschata] >KAG6584231.1 hypothetical protein SDJN03_20163, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 501.9 bits (1291), Expect = 3.3e-138
Identity = 236/258 (91.47%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMAL +L+DGRFSPHHTL+YT+NAFFGPDIGSFS+WLSSVLGFS S
Sbjct: 1   MPGPGPHMLYAMGSGMALMSLSDGRFSPHHTLIYTINAFFGPDIGSFSEWLSSVLGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHP+FY+LILGLPLCLFY+WLSS LL K LLDSVFGVSLNRRQCLLLISAGSFS
Sbjct: 61  SVPDAIHHPVFYILILGLPLCLFYAWLSSVLLRKGLLDSVFGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINRVKSA
Sbjct: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRVKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSI +QSYQSVKLI+VVATLYSMWCASQIYWA+PRRPAVGEEADLGVLVFL VYFFLPHY
Sbjct: 181 KSIPKQSYQSVKLIIVVATLYSMWCASQIYWANPRRPAVGEEADLGVLVFLFVYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKDLEI+HLPL
Sbjct: 241 LCIKSMQPKDLEIRHLPL 258

[Close]

BLAST of Clc01G12870 vs. NCBI nr
Match: KAG7019828.1 (hypothetical protein SDJN02_18792 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 500.4 bits (1287), Expect = 9.5e-138
Identity = 235/258 (91.09%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMAL +L+DGRFSPHHTL+YT+NAFFGPDIGSFS+WLSSVLGFS S
Sbjct: 1   MPGPGPHMLYAMGSGMALMSLSDGRFSPHHTLIYTINAFFGPDIGSFSEWLSSVLGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHP+FY+LILGLPLCLFY+WLSS LL K LLDSVFGVSLNRRQCL LISAGSFS
Sbjct: 61  SVPDAIHHPVFYILILGLPLCLFYAWLSSVLLRKGLLDSVFGVSLNRRQCLFLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINRVKSA
Sbjct: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRVKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSI +QSYQSVKLI+VVATLYSMWCASQIYWA+PRRPAVGEEADLGVLVFL VYFFLPHY
Sbjct: 181 KSIPKQSYQSVKLIIVVATLYSMWCASQIYWANPRRPAVGEEADLGVLVFLFVYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKDLEI+HLPL
Sbjct: 241 LCIKSMQPKDLEIRHLPL 258

[Close]

BLAST of Clc01G12870 vs. ExPASy TrEMBL
Match: A0A0A0LR72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045960 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.2e-140
Identity = 241/258 (93.41%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMALTTL+DGRFSPHHTL YT+NAFFGPDIGSFSDWLSSVLGFSAS
Sbjct: 1   MPGPGPHMLYAMGSGMALTTLSDGRFSPHHTLFYTINAFFGPDIGSFSDWLSSVLGFSAS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PD IHHP+FY+LILGLPLCLFYSWLSSFLLHK LLDSVFGVSLNRRQCLLLISAGSFS
Sbjct: 61  SVPDVIHHPVFYILILGLPLCLFYSWLSSFLLHKGLLDSVFGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSS YTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINRVKS 
Sbjct: 121 HFFLDHLFEENGHSSTYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRVKSG 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSIS+QSYQSVKL+VVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLV YFFLPHY
Sbjct: 181 KSISKQSYQSVKLMVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVFYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKD E KHLPL
Sbjct: 241 LCIKSMQPKDSETKHLPL 258

[Close]

BLAST of Clc01G12870 vs. ExPASy TrEMBL
Match: A0A6J1EAR6 (uncharacterized protein LOC111431454 OS=Cucurbita moschata OX=3662 GN=LOC111431454 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 236/258 (91.47%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMAL +L+DGRFSPHHTL+YT+NAFFGPDIGSFS+WLSSVLGFS S
Sbjct: 1   MPGPGPHMLYAMGSGMALMSLSDGRFSPHHTLIYTINAFFGPDIGSFSEWLSSVLGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHP+FY+LILGLPLCLFY+WLSS LL K LLDSVFGVSLNRRQCLLLISAGSFS
Sbjct: 61  SVPDAIHHPVFYILILGLPLCLFYAWLSSVLLRKGLLDSVFGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINRVKSA
Sbjct: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRVKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSI +QSYQSVKLI+VVATLYSMWCASQIYWA+PRRPAVGEEADLGVLVFL VYFFLPHY
Sbjct: 181 KSIPKQSYQSVKLIIVVATLYSMWCASQIYWANPRRPAVGEEADLGVLVFLFVYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKDLEI+HLPL
Sbjct: 241 LCIKSMQPKDLEIRHLPL 258

[Close]

BLAST of Clc01G12870 vs. ExPASy TrEMBL
Match: A0A6J1KN89 (uncharacterized protein LOC111495033 OS=Cucurbita maxima OX=3661 GN=LOC111495033 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.0e-137
Identity = 233/258 (90.31%), Postives = 249/258 (96.51%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMAL +L+DGRFSPHHTL+YT+NAFFGPDIGSFS+WLSSVLGFS S
Sbjct: 1   MPGPGPHMLYAMGSGMALMSLSDGRFSPHHTLIYTINAFFGPDIGSFSEWLSSVLGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHP+FY+LILGLPLCLFY+WLSSFLL K LLDSVFGV LN+ QCLLLISAGSFS
Sbjct: 61  SVPDAIHHPVFYILILGLPLCLFYAWLSSFLLRKGLLDSVFGVPLNKMQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAV+VVGFLCTCLIGGFVYINRVKSA
Sbjct: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVMVVGFLCTCLIGGFVYINRVKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSI +QSYQSVKLI+VVATLYSMWCASQIYWA+PRRPA GEEADLGVLVFL VYFFLPHY
Sbjct: 181 KSIPKQSYQSVKLIIVVATLYSMWCASQIYWANPRRPAAGEEADLGVLVFLFVYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKDLEI+HLPL
Sbjct: 241 LCIKSMQPKDLEIRHLPL 258

[Close]

BLAST of Clc01G12870 vs. ExPASy TrEMBL
Match: A0A1S3AWH9 (uncharacterized protein LOC103483387 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483387 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.3e-136
Identity = 236/258 (91.47%), Postives = 244/258 (94.57%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTL Y++NAFFGPDIGSFSDWLSSVLGF AS
Sbjct: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLFYSINAFFGPDIGSFSDWLSSVLGFPAS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           SLPDAIHHP+FY+LILGLPLCLFYSWLSSFLL K LLDSV GVSLNRRQCLLLISAGSFS
Sbjct: 61  SLPDAIHHPVFYILILGLPLCLFYSWLSSFLLRKGLLDSVCGVSLNRRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSS YTWILSTGWWENRAPINPDAV VVGFLC CLIGGFVYINRVKS 
Sbjct: 121 HFFLDHLFEENGHSSTYTWILSTGWWENRAPINPDAVFVVGFLCACLIGGFVYINRVKSG 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSIS+Q +QSVKL+VVVATLYSMWCASQIYWASPRRPAVGEEAD GVLVFLV YFFLPHY
Sbjct: 181 KSISKQWFQSVKLMVVVATLYSMWCASQIYWASPRRPAVGEEADFGVLVFLVFYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSMQPKD E KHLPL
Sbjct: 241 LCIKSMQPKDSETKHLPL 258

[Close]

BLAST of Clc01G12870 vs. ExPASy TrEMBL
Match: A0A6J1C7B1 (uncharacterized protein LOC111009054 OS=Momordica charantia OX=3673 GN=LOC111009054 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.5e-133
Identity = 230/258 (89.15%), Postives = 243/258 (94.19%), Query Frame = 0


Query: 1   MPGPGPHMLYAMGSGMALTTLTDGRFSPHHTLVYTLNAFFGPDIGSFSDWLSSVLGFSAS 60
           MPGPGPHMLYAMGSGMAL TL+DGRFSPHH LVYT+NAFFGPDIGSFS+WL+S+LGFS S
Sbjct: 1   MPGPGPHMLYAMGSGMALMTLSDGRFSPHHALVYTINAFFGPDIGSFSEWLASILGFSGS 60

Query: 61  SLPDAIHHPLFYVLILGLPLCLFYSWLSSFLLHKALLDSVFGVSLNRRQCLLLISAGSFS 120
           S+PDAIHHPLFY+LILGLPLCLFYS+LSS LL K  LDSVFGVSLN RQCLLLISAGSFS
Sbjct: 61  SIPDAIHHPLFYILILGLPLCLFYSFLSSVLLQKGALDSVFGVSLNTRQCLLLISAGSFS 120

Query: 121 HFFLDHLFEENGHSSMYTWILSTGWWENRAPINPDAVLVVGFLCTCLIGGFVYINRVKSA 180
           HFFLDHLFEENGHSSMYTWILSTGWW NRAPINPDAV++VGFLC CLIGGFVYINRVKSA
Sbjct: 121 HFFLDHLFEENGHSSMYTWILSTGWWANRAPINPDAVVIVGFLCICLIGGFVYINRVKSA 180

Query: 181 KSISEQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLVVYFFLPHY 240
           KSI +QSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFL  YFFLPHY
Sbjct: 181 KSIWKQSYQSVKLIVVVATLYSMWCASQIYWASPRRPAVGEEADLGVLVFLAFYFFLPHY 240

Query: 241 LCMKSMQPKDLEIKHLPL 259
           LC+KSM PKDLEI+ LPL
Sbjct: 241 LCIKSMHPKDLEIRQLPL 258

The following BLAST results are available for this feature:

BLAST of Clc01G12870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152468.1	4.6e-140	93.41	uncharacterized protein LOC101221499 isoform X1 [Cucumis sativus] >KGN64298.1 hy...	[more]
XP_038893660.1	2.3e-139	93.02	uncharacterized protein LOC120082528 isoform X1 [Benincasa hispida]	[more]
XP_023519820.1	1.5e-138	91.09	uncharacterized protein LOC111783152 [Cucurbita pepo subsp. pepo]	[more]
XP_022923863.1	3.3e-138	91.47	uncharacterized protein LOC111431454 [Cucurbita moschata] >KAG6584231.1 hypothet...	[more]
KAG7019828.1	9.5e-138	91.09	hypothetical protein SDJN02_18792 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Clc01G12870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G12870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR72	2.2e-140	93.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045960 PE=4 SV=1	[more]
A0A6J1EAR6	1.6e-138	91.47	uncharacterized protein LOC111431454 OS=Cucurbita moschata OX=3662 GN=LOC1114314...	[more]
A0A6J1KN89	3.0e-137	90.31	uncharacterized protein LOC111495033 OS=Cucurbita maxima OX=3661 GN=LOC111495033...	[more]
A0A1S3AWH9	3.3e-136	91.47	uncharacterized protein LOC103483387 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1C7B1	4.5e-133	89.15	uncharacterized protein LOC111009054 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]

BLAST of Clc01G12870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38543	OS04G0465800 PROTEIN	coord: 1..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G12870.1	Clc01G12870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane