Clc01G12830 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G12830
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransport and Golgi organization 2-like protein
LocationClcChr01: 24567239 .. 24572417 (-)
RNA-Seq ExpressionClc01G12830
SyntenyClc01G12830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAAAGCAGACGAGAGGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGGAATGGTGGCTTTTACTGCCGTCGATTGCTTGGTAGGTGGTATCGTTACACTGGATTTGGGCTTTGGTAGGGGAGGGCTCCTTCCAACTTATATGGTGAGTATGTGGGGGTTTTTTTTTTTTTTTTTTTCATCTTCCGGTGTTGTATGTTCATATAGTCGTTCGATTTTTTGTTCTTTTCAACATTTGGCCGAGATTAGGTGCAGATTTGTTTGCCATTTCTTTTTTCTTCGGATATCTGTTGTTTTATAATTTTTTCCTTTCTCATCTTGTTACATGTTCATGGATCTATGGTCTAATCTTCTTCCTTTCATGTTTTGCATATTTATCATACTCATCTTCGATGTTGCATGTTCATATATTTGTTCCATTTTTTTTTCGACATTCGGCCGAGATTGGATGTAGACTTGTGTTCCATTATTTTTTTCATTGAAGATCTGTTGTTGTATAATTTTTTCGTCTTCTGATTTTGTTACATGTTTGTAGATATATGGTTCTTTCATGTTTAGATGAATCTCTTTTGATAGATCTTATTGCCATTTTTTTCCTCTTCTGATTATGTTGCATGTTCATAGATTCATAGTTTCAATTTTTTTTTGTCATTTTCGGATGGGTTTGCATTTTGTTACTCTATTCCTTCCATTTTTTGGATGTTTACATATATGTGGTTTTCATTTTCCATATTGGCCGATGATGATGGTTTTTCCAATTTTCCTTCAAACTGTTTTATCTGGATAATTTTCTTTCCTCGATTACCATTTCGAACTCTACAATTTTCATCTTACCTTTTCAAATGAACATTTGTTTGAAGCATGCTAGATTTTTTCTTTGATTTTAACCAGTTGATCGGTTCCGTTTCTATTTTCTAACTAAAAATGATTGTTTATTTCGTTTTTTTTTACCACACCTGAGGCCATTTTCAAAAAGTAAAATCATAGTAATTGAGTAATTGGATATCTAGTTCTATTCAAACCGAATCTGTTGGATCACAACTATTTTTTTAATTATTATGTTATTATTGTATGTGGTTGTTGGTTTATTAAAATGGTTGTCATTTCTATTAAAAACGTGCACTGTTCCTCATTTTAATTTGGGTGGTTGGATTGCTTAACCTCATTAACTCTATGTTTATATTCACTCTTATTCTTGATCGCACACCATTTGAAGAAGAAATTCTCTCTCCAACTTGTTCCTGTCTAGTGGTGAGTCCCCTTGAAGCCCGACCCCCCTTTTTTTCCTCCTTATGTTATGAATTTGTTTTCATCAAACTTTGTTCTCAATTTGTTCTACTTCCTTGTTTCATGTGACGGTGGACTTGTTATTTCTTCTATGTCTTATTCATTTGCTTGTTCAACCCAATTGATAGTCGGTTTTTAACGGGTACGTACATATGCTTCGGTCTTTTCTATATTTCTGTTCTTGTTCGTAATCTTTACTTAATTAATATATATATATATATTTTTTTTGTCAATGTAGGGTGGAAATTGACATTTAACCAATCTACCCTGTCCAATCGTCACTACATTATACATAAATCATTTGTACTACTCTTTTTTGTTTTTTAAGTACATGTTATTTGTAGAACTTGTTGTTTGAAAAATGTATGTTTTATTTTGTTTGAAATGTTTCTGTATAATTCATTTTGTTCCACCTTTGTTTAAAAACAGTTTGAAAAATTAATGTGTATTTTACGTATTTCATTATTGATCAATGAATTTGAATTGTATATTTTAGTTTATCATTTGTATTATACAATTTTCTTTTTATTTTATATAAAACGCATCTTAGGATATGTGATTAAATATGTGTATTCAAGGTGTAAAAATAAAAAATAAAAAATAATACAGTCAAGAACAACAAAAAAAAATTTTAAGTCAAATTTTCTTTCACCTAATTCATGAGAGCATAAAAGAAAGAACCAAAAAAATAAAATAAAATAAAATACCAATTCAATTCTCGATCCTATTTGAAAGATTTATACGAAAAAGAATTTTTACTTTCAAAATATAAGGTATAATTTATAATTAAAATACAAATGTTCCATCATGAAAAAATAAATGAAGAAGAAGAAGCACAAGAAAGATTTCTTGGTGGTGTCCCAAGAAGAACTACTGCATTCCTTGGAGGAGTTTTCATACTTGTCGGGATTTTGGTGAAAAGATTTACATCCTACCTAAAGACGGTTATTAAAGGTGGAAGTATTTCTAATCCTTAATTCTTCTTAATAGCATGCTAATTGTATTAGTTTATCAAAATTGTTTATTCTTTGTAATTTGTATTTTTCAAAAGAAACTTATTGGCATAAGGCGATCGTTCGTTTCTACTAAGGATTCAAATCCTTCAATTTTTAACACTTATATAAATTTGAGGGCTCCATTTTCAAAATTGAAAGTTGGGTATAATTGCAGCTGCTAAAATATTTGTAGGAAATTTTTGCAAATTTGCCTTCTTTTTATAAGTAGTTTAGTATTTGTAAGATAAATCAAAGTTCTAGGCAAGAAATTCTCCATTCTTGAAAATTTTAAAAGCAAGACAACAATTTTTACTTTTTTTTATTTTATATTCTTAATTAAAGTTTCTTTGTCCAGGTTTATCTTGTTGCATTCACCACCATTCCACTTTATTTAAGTGATTGTAGTGGTTTTTTTTTTTTTTCCCACTCTTTTGTTTGTGTTAAGATTTTCTTTTCCATGTACCAAATGTTGTCAAGTAAAAAAAATAAAAGATTTAAAAAGTAATAATACCGTTATTGACACTTAAAGTTAAATAATTCAAATCACAATAAGATAATATGATTTTCCTCAATGGAGAGGGTGCATATGTTATGTCAAACATTGACCCATTCATCACCATTTATATAGTTTAGACACTCACCGAAAACCTAAGTGAATTTCCTGAGTTATTCAACTTTAGATTGTATGATTTAGTCTTCTACCTGGTAGTAATATAATTTAATTAATCATGAGTTAAAATGAGTTTGACTCAATAGTATTGGCATGTGCTCCGTCCCTAGAGGCTAGAAGTTTAATCCACCTCGCAATTGATGTACTAAAAAAAATAATAAATTAAAATAAAATAATTCATGATCTTTAGAGTGTAACAATTTTGTCCATGTACTTTCAAATTTGTAATAGTTTAGAATCCAATTGGTTTTTTATTTTTAAAAATTAAGTATATTTTCTCCATATTTGTTATAATGATTTGCATCTTTCTTAAATACAATAGTTGAATTCTTAGCTAAATTCTAAAAACAAAAAAAAGTTTTTAAAAGCTACTTTTTTAGTTTTCAAAATTTGATTTGGTTTTTTAAACCATTGATAAAAAGGTAGATAACAAAGGAAGAAAATTGGAGGTAGAAGTAGTTTCTATAAGCTTAATTTTCAAAAACAAAAAAACCATTTATCAAACGGGGCCATAATTACTACTATAAAATATTTTATCAAAATTCAATGCCAATTTCTATTATTTAATGATGTAGACTTCATAATTTATAAACATATTGGATCTCTACTTAGTTTATCAATCTACCTTTCCATGAAATCTCATTAAATCTTAACATTTATTTTAATTACTATAGAGACTAATTAAATCGTTGCAATTTTTAAAGTACAAAAATTTAATTATTTATATAGTAAAATTTAAGAATTAAAATGTTATAAAATTGAAAGTAGGCAAAATAAATCATTACAAACCAAAATTAAATTGAGGAATGATACTAACATAAAAATTGGTTGTTGATGAGAAAGAGAAATAAAGTAAATGTATATAGATACGTTATAATATAAAGTATAAATTTTGAATCTCATTCAAAATAAACTTTATATTATAAGAGAGATGAATATTTAAATGAGATTTAAATATTAATTATATGAATGAGATTCATGTAAAAACTATAGGTTAAAATTAATATGAATGAGATTCATATGAACAACCTAACAATCTCATTCATGGAGGGAGGTCCATGAGATAGCCGGATGGAGAGGCGAGGTCTGGGTCGGAACTTTGTTAGGTTGTTCAAGGAAAGGCAGGGTTGCATTTGTTACTAATGTGTTTTTGTATGTATGATATATCATTTGGAAGGGCTTTCAACTAAAGAAAAAATGCATTTAAAAGTTTTGAAGTTCCTACCTTGAATGTACTTTATACATGACGAGGAAGTAAAGATATTTTAACTATTGAGCTATGTTCATTTTCGAAATTCATTCTTAATCTATTAATTCTTAATATGCCTTCTTTTTGGTATTATTTTCTGCACGTACTCTACTAACTTTTCAAAGAGCAAATTTTCTCTTACCAACTTTTTTATTTTCTCTACAGACATTTCTTCCCAATCTCTCATCAACACACACTTACTCATTACACATGTAGTTCATCTCATTGTTCTGTTTTCAAACTTATCTCACTCAATTTTTTTTCGTTGTAATTTAAAATTTTCAAATATAGAAATAGATCAACATCAAAATGTTAAATACTTTTTGTTAAAAACAGTTTTTATAGAACTTCTATAGAATCATTCGTAAACACCCTTGCTGCTGAAGTCACTTTCAACTCTAGAATCTATCTTAGGTTCCATATAATTGAATCCATTTACTGTTATTCTCAGAGCACAAAGAGTATCAATATAATGGATTTAACCTAGTAGTAGGTGACATATGTCCAAAAACCATGGCTTACATGTGCTAGCTGATGCAGAACTTGATTCCGCTTGGCATAAGGTTTGTAACTTGTAACCTTAATATTATTCAAGTCACATAAATAAATAAATAAATAAATATATATATATATATAATATATATATATATTATATATATATATATATATATATATATATATATATATATATATATATATGCACATGAAAAGCCAAACCAACATGGAAGAAAGAAAAAGTGAAGAAAAATAAAATAGTGAGTGGCTGAAGGCTTTGACTTGCATACAGGCGCAACACTTGAGGCTAAAATTTAATGAACAGCTTCGTGCATTTGCCGAAGGTGAAATACCTAAGAAAGGGTGGATTGAGAGGTTAATGAGGGACGTCGTTAAAGCTGATGAAGGCAAACTTCCTCATATATGCTCCCCTGACTTCGACCCGTCTTTGTCCAATTTCACACCCTTCTGGTAA

mRNA sequence

ATGCTTCAAAGCAGACGAGAGGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGGAATGGTGGCTTTTACTGCCGTCGATTGCTTGGTAGGTGGTATCGTTACACTGGATTTGGGCTTTGGTAGGGGAGGGCTCCTTCCAACTTATATGGCGCAACACTTGAGGCTAAAATTTAATGAACAGCTTCGTGCATTTGCCGAAGGTGAAATACCTAAGAAAGGGTGGATTGAGAGGTTAATGAGGGACGTCGTTAAAGCTGATGAAGGCAAACTTCCTCATATATGCTCCCCTGACTTCGACCCGTCTTTGTCCAATTTCACACCCTTCTGGTAA

Coding sequence (CDS)

ATGCTTCAAAGCAGACGAGAGGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGGAATGGTGGCTTTTACTGCCGTCGATTGCTTGGTAGGTGGTATCGTTACACTGGATTTGGGCTTTGGTAGGGGAGGGCTCCTTCCAACTTATATGGCGCAACACTTGAGGCTAAAATTTAATGAACAGCTTCGTGCATTTGCCGAAGGTGAAATACCTAAGAAAGGGTGGATTGAGAGGTTAATGAGGGACGTCGTTAAAGCTGATGAAGGCAAACTTCCTCATATATGCTCCCCTGACTTCGACCCGTCTTTGTCCAATTTCACACCCTTCTGGTAA

Protein sequence

MLQSRREGTLKPSLAALTAGMVAFTAVDCLVGGIVTLDLGFGRGGLLPTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSNFTPFW
Homology
[Close]
BLAST of Clc01G12830 vs. NCBI nr
Match: XP_008462211.1 (PREDICTED: transport and Golgi organization 2 homolog [Cucumis melo] >XP_008462220.1 PREDICTED: transport and Golgi organization 2 homolog [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 50  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Sbjct: 157 HKVQRLRLKFNEQLRIYGEGEIPEKAMVERLMRDHVKADESKLPHISSPDWEYNTSS 213

[Close]
BLAST of Clc01G12830 vs. NCBI nr
Match: KAA0052070.1 (transport and Golgi organization 2-like protein [Cucumis melo var. makuwa] >TYK00685.1 transport and Golgi organization 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 50  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Sbjct: 157 HKVQRLRLKFNEQLRIYGEGEIPEKAMVERLMRDHVKADESKLPHISSPDWEYNTSS 213

[Close]
BLAST of Clc01G12830 vs. NCBI nr
Match: XP_022153121.1 (transport and Golgi organization 2 homolog [Momordica charantia] >XP_022153123.1 transport and Golgi organization 2 homolog [Momordica charantia] >XP_022153124.1 transport and Golgi organization 2 homolog [Momordica charantia] >XP_022153125.1 transport and Golgi organization 2 homolog [Momordica charantia] >XP_022153126.1 transport and Golgi organization 2 homolog [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 5.0e-11
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 48  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLS 106
           P + AQ LRLKFNEQL     GEIP K  IERLMRD VKADE KLPHICS D++  LS
Sbjct: 155 PWHKAQRLRLKFNEQLHKCDGGEIPVKEMIERLMRDTVKADESKLPHICSLDWELDLS 212

[Close]
BLAST of Clc01G12830 vs. NCBI nr
Match: XP_011654181.1 (transport and Golgi organization 2 homolog [Cucumis sativus] >XP_011654185.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739931.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739936.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739942.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739946.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739952.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739957.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739963.1 transport and Golgi organization 2 homolog [Cucumis sativus] >XP_031739965.1 transport and Golgi organization 2 homolog [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-10
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 50  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           +  Q LRLKFNEQL  +AEGEIP+K  +ERLMRD VKADE KLP I SPD++ + S+
Sbjct: 157 HKVQRLRLKFNEQLCIYAEGEIPEKEMVERLMRDHVKADESKLPRISSPDWEYNTSS 213

[Close]
BLAST of Clc01G12830 vs. NCBI nr
Match: KAF3973804.1 (hypothetical protein CMV_002802 [Castanea mollissima])

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-09
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 48  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           P + AQ L L F E+L    +GEIP K  +E+LMRD VKADE KLPHICS D++ +LS+
Sbjct: 155 PWHKAQRLGLSFKERLAKHGKGEIPLKEMVEKLMRDTVKADESKLPHICSLDWEFNLSS 213

[Close]
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match: A0A1S3CGF4 (transport and Golgi organization 2 homolog OS=Cucumis melo OX=3656 GN=LOC103500621 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 50  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Sbjct: 157 HKVQRLRLKFNEQLRIYGEGEIPEKAMVERLMRDHVKADESKLPHISSPDWEYNTSS 213

[Close]
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match: A0A5A7UA61 (Transport and Golgi organization 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00250 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 50  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           +  Q LRLKFNEQLR + EGEIP+K  +ERLMRD VKADE KLPHI SPD++ + S+
Sbjct: 157 HKVQRLRLKFNEQLRIYGEGEIPEKAMVERLMRDHVKADESKLPHISSPDWEYNTSS 213

[Close]
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match: A0A6J1DFX0 (transport and Golgi organization 2 homolog OS=Momordica charantia OX=3673 GN=LOC111020699 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 48  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLS 106
           P + AQ LRLKFNEQL     GEIP K  IERLMRD VKADE KLPHICS D++  LS
Sbjct: 155 PWHKAQRLRLKFNEQLHKCDGGEIPVKEMIERLMRDTVKADESKLPHICSLDWELDLS 212

[Close]
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match: A0A0A0LSJ0 (Sterile domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G144330 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 50  YMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           +  Q LRLKFNEQL  +AEGEIP+K  +ERLMRD VKADE KLP I SPD++ + S+
Sbjct: 295 HKVQRLRLKFNEQLCIYAEGEIPEKEMVERLMRDHVKADESKLPRISSPDWEYNTSS 351

[Close]
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match: A0A5N6RBW6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014100 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.9e-09
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 48  PTYMAQHLRLKFNEQLRAFAEGEIPKKGWIERLMRDVVKADEGKLPHICSPDFDPSLSN 107
           P + AQ LRL F EQL  + +GE+P K   E+LMRD VKADE KLP ICS D++ +LS+
Sbjct: 155 PWHKAQRLRLSFKEQLGKYGKGELPVKEMAEKLMRDTVKADESKLPRICSLDWEFNLSS 213

The following BLAST results are available for this feature:
BLAST of Clc01G12830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462211.17.8e-1264.91PREDICTED: transport and Golgi organization 2 homolog [Cucumis melo] >XP_0084622... [more]
KAA0052070.17.8e-1264.91transport and Golgi organization 2-like protein [Cucumis melo var. makuwa] >TYK0... [more]
XP_022153121.15.0e-1167.24transport and Golgi organization 2 homolog [Momordica charantia] >XP_022153123.1... [more]
XP_011654181.13.3e-1063.16transport and Golgi organization 2 homolog [Cucumis sativus] >XP_011654185.1 tra... [more]
KAF3973804.18.0e-0955.93hypothetical protein CMV_002802 [Castanea mollissima][more]
BLAST of Clc01G12830 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CGF43.8e-1264.91transport and Golgi organization 2 homolog OS=Cucumis melo OX=3656 GN=LOC1035006... [more]
A0A5A7UA613.8e-1264.91Transport and Golgi organization 2-like protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A6J1DFX02.4e-1167.24transport and Golgi organization 2 homolog OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0LSJ01.6e-1063.16Sterile domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G144330 PE=... [more]
A0A5N6RBW63.9e-0955.93Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014100 PE=4 SV=1[more]
BLAST of Clc01G12830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G12830.1Clc01G12830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane