Clc01G12340 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G12340
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionDUF4283 domain-containing protein
LocationClcChr01: 21663814 .. 21665130 (-)
RNA-Seq ExpressionClc01G12340
SyntenyClc01G12340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACATCATATGGGGGTTGGATTGATCTTTACCACCTTCCAGTCACCCTCTGGACTGAAGCCATATTCAAATTTATCGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGGTCTAAACCTCTCATTTGTTCACATCAAAATCAAAGAAAATTAGTGTGGCCTCATTCCTTGTGAAGTTTGCCTTCCTATTGAAGTCGCGGGACCCGCATCACCGTTTCCATCATTGCCCCCAATCTAATATCTCCGGGCCGGCGAGATGATTTGAAACTGACGCACGAAGCTAGCATTAATGGTTCGGCTGAAATTGTGGATCACAATCAATTTCGAAGGATTAACAAGGGTAAATTTATTGTCGAAGATACAATCCAAGCCGAAATGCCCTCTCTCTCCCCATATTTGGAGCATCCTTTTGATTAAGTTTCTCTCTCTCCTAACCATCAACCAAAGCCTTTGACCAAATCTCCACAAATTATGGAAAATAATATCCCTCTTTCTCCTCAAATAACTGAATCACCCACCCCCCTCTCTCCTCCAATTAAGTGAAATTTAATCATCTCTCCTCAGCCAAATACATCGGTGGACCCCCCTCTCGAAATACAATCTTCTTCCACACTATCGGTCAACCCTAGCCGAAATACCCCTTCCTTTATTTTCCATAATCAGAATCTCAGCGCTGAAAATTCAGCATCTCCTTCCATTACAAAACCTTCTCTCTCCACTGTCACCTTTCGTGAGGGTCCCACTAATCTCCAAGTTGGTCAATCTTTCTCCACATCAGTAGGAAAACAGAATCTTCCCTTTGCTGGATCTAACACAAAAGCCTACCTTTCCAGCCTGCAAATGATGTGGCACTACTAATCCGGCTGATGTTGAAGAATTTACCCCCTGCCCTCTTGACATGGCCATTTATGGTGATGAACCGGATGAAACTCATAACTTACCACTATACACTTTTCCTCCTCTCCCATCGGACATTAGTCCTCAAGATCATATTTTGGGGCCCACTCCATCACAAAATATGACAGCTCCTTACAGCCCCTCTTTTTCGAATTATGAACAATCGGCCCCAATCTCATCAAACTTACCATTCAGCCCCCATGACCTTGCCTCCCTACTGTCTACCCATGGCTTATGTGCCATCCCCTCCATTCCTCAACAATCCAAATCCAAAGGTCCAGCGCATGCTAAAAGCAAAAAATCTAAGCTACAAAGAGAGTTGCAAGGCCTTTATTCCTCGATACACTATGATAAGACAGCAACATTGGCCATTAGGGAGGGAACTTCTGTAGCTCAATGA

mRNA sequence

ATGACTACATCATATGGGGGTTGGATTGATCTTTACCACCTTCCAGTCACCCTCTGGACTGAAGCCATATTCAAATTTATCGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGAATTTACCCCCTGCCCTCTTGACATGGCCATTTATGGTGATGAACCGGATGAAACTCATAACTTACCACTATACACTTTTCCTCCTCTCCCATCGGACATTAGTCCTCAAGATCATATTTTGGGGCCCACTCCATCACAAAATATGACAGCTCCTTACAGCCCCTCTTTTTCGAATTATGAACAATCGGCCCCAATCTCATCAAACTTACCATTCAGCCCCCATGACCTTGCCTCCCTACTGTCTACCCATGGCTTATGTGCCATCCCCTCCATTCCTCAACAATCCAAATCCAAAGGTCCAGCGCATGCTAAAAGCAAAAAATCTAAGCTACAAAGAGAGTTGCAAGGCCTTTATTCCTCGATACACTATGATAAGACAGCAACATTGGCCATTAGGGAGGGAACTTCTGTAGCTCAATGA

Coding sequence (CDS)

ATGACTACATCATATGGGGGTTGGATTGATCTTTACCACCTTCCAGTCACCCTCTGGACTGAAGCCATATTCAAATTTATCGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGAATTTACCCCCTGCCCTCTTGACATGGCCATTTATGGTGATGAACCGGATGAAACTCATAACTTACCACTATACACTTTTCCTCCTCTCCCATCGGACATTAGTCCTCAAGATCATATTTTGGGGCCCACTCCATCACAAAATATGACAGCTCCTTACAGCCCCTCTTTTTCGAATTATGAACAATCGGCCCCAATCTCATCAAACTTACCATTCAGCCCCCATGACCTTGCCTCCCTACTGTCTACCCATGGCTTATGTGCCATCCCCTCCATTCCTCAACAATCCAAATCCAAAGGTCCAGCGCATGCTAAAAGCAAAAAATCTAAGCTACAAAGAGAGTTGCAAGGCCTTTATTCCTCGATACACTATGATAAGACAGCAACATTGGCCATTAGGGAGGGAACTTCTGTAGCTCAATGA

Protein sequence

MTTSYGGWIDLYHLPVTLWTEAIFKFIGDFCGGYLHPSNQTEREFTPCPLDMAIYGDEPDETHNLPLYTFPPLPSDISPQDHILGPTPSQNMTAPYSPSFSNYEQSAPISSNLPFSPHDLASLLSTHGLCAIPSIPQQSKSKGPAHAKSKKSKLQRELQGLYSSIHYDKTATLAIREGTSVAQ
Homology
BLAST of Clc01G12340 vs. NCBI nr
Match: TYK05133.1 (hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-13
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0

Query: 44  EFTPCPLDMAIYGDEPDETHNLPLYTFPPLPSDI-SPQDHILGPTPSQNMTAPYSPSFSN 103
           +F    L+ A++G+ P E+ +LP+   PP+P+D  SP  H   P PS+  +    PS   
Sbjct: 47  DFATHSLENAVFGENPSES-DLPITILPPVPTDFHSPMQH---PIPSKQPSTSDIPS--- 106

Query: 104 YEQSAPISSNLPFSPHDLASLLSTHGLC--AIPSIPQQSKSKGPAHAKSKKSKLQRELQG 163
                  S+  P S  D+AS+L  HGLC  AIPS+P   K K P  A ++++KLQRELQ 
Sbjct: 107 ------TSTATPISLRDIASILLQHGLCVMAIPSLP-PPKLKKPYTANTERNKLQRELQN 166

Query: 164 LYSSIHYDKTATLAIREGTSVAQ 184
           L SSI YDK+  LA REG +VA+
Sbjct: 167 LQSSICYDKSLALANREGPNVAK 175

BLAST of Clc01G12340 vs. NCBI nr
Match: KAA0050510.1 (hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-08
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 0

Query: 50  LDMAIYGDEPDETHNLPLYTFPPLPSDISPQDHILGPTP-----SQNMTAPYSPSFSNYE 109
           LD+AI+G++P E H L L   PP+P D++   H   PTP     SQ +  P+ P+ S   
Sbjct: 48  LDVAIFGEDPTEAHQL-LLILPPIPKDLNRLVH-SSPTPLTSTSSQTINVPHPPANSLNL 107

Query: 110 QSAPISSNLPFSPHDLASLLSTHGLCAIPSIPQQSKSKGPAHAKSKKSKLQRELQGLYSS 169
           Q  P             SLL    +  +  +    K+K  A   SK++KLQRELQ L+ S
Sbjct: 108 QGLP------------QSLLHMDLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCS 167

Query: 170 IHYDKTATLAIREG 179
           I+YDK+ATLAI EG
Sbjct: 168 INYDKSATLAISEG 167

BLAST of Clc01G12340 vs. NCBI nr
Match: KAE8648340.1 (hypothetical protein Csa_023105, partial [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-05
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 2  TTSYGGWIDLYHLPVTLWTEAIFKFIGDFCGGYLHPSNQTER 44
          T SYGGWID++ LP  L  E I KFIG+ CGGY+  +NQT R
Sbjct: 42 TASYGGWIDIFDLPPILCYEQIVKFIGNHCGGYVGCANQTGR 83

BLAST of Clc01G12340 vs. NCBI nr
Match: TYK14201.1 (hypothetical protein E5676_scaffold5G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 4  SYGGWIDLYHLPVTLWTEAIFKFIGDFCGGYLHPSNQTER 44
          S+GGWID++ LP  LW E I +FIG+ CGG++  SNQT+R
Sbjct: 46 SHGGWIDVFDLP-PLWNEQIVQFIGNHCGGFIGSSNQTDR 84

BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A5D3BZG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00370 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0

Query: 44  EFTPCPLDMAIYGDEPDETHNLPLYTFPPLPSDI-SPQDHILGPTPSQNMTAPYSPSFSN 103
           +F    L+ A++G+ P E+ +LP+   PP+P+D  SP  H   P PS+  +    PS   
Sbjct: 47  DFATHSLENAVFGENPSES-DLPITILPPVPTDFHSPMQH---PIPSKQPSTSDIPS--- 106

Query: 104 YEQSAPISSNLPFSPHDLASLLSTHGLC--AIPSIPQQSKSKGPAHAKSKKSKLQRELQG 163
                  S+  P S  D+AS+L  HGLC  AIPS+P   K K P  A ++++KLQRELQ 
Sbjct: 107 ------TSTATPISLRDIASILLQHGLCVMAIPSLP-PPKLKKPYTANTERNKLQRELQN 166

Query: 164 LYSSIHYDKTATLAIREGTSVAQ 184
           L SSI YDK+  LA REG +VA+
Sbjct: 167 LQSSICYDKSLALANREGPNVAK 175

BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A5A7U5M3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001530 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 0

Query: 50  LDMAIYGDEPDETHNLPLYTFPPLPSDISPQDHILGPTP-----SQNMTAPYSPSFSNYE 109
           LD+AI+G++P E H L L   PP+P D++   H   PTP     SQ +  P+ P+ S   
Sbjct: 48  LDVAIFGEDPTEAHQL-LLILPPIPKDLNRLVH-SSPTPLTSTSSQTINVPHPPANSLNL 107

Query: 110 QSAPISSNLPFSPHDLASLLSTHGLCAIPSIPQQSKSKGPAHAKSKKSKLQRELQGLYSS 169
           Q  P             SLL    +  +  +    K+K  A   SK++KLQRELQ L+ S
Sbjct: 108 QGLP------------QSLLHMDLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCS 167

Query: 170 IHYDKTATLAIREG 179
           I+YDK+ATLAI EG
Sbjct: 168 INYDKSATLAISEG 167

BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A0A0KND3 (DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G467400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-06
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 0

Query: 2  TTSYGGWIDLYHLPVTLWTEAIFKFIGDFCGGYLHPSNQTER 44
          T S+GGWID++ LP+ L  E IF+FIG+ CGG++  SN+T+R
Sbjct: 18 TASHGGWIDVFDLPLNLLNEQIFRFIGNCCGGFIGSSNRTDR 59

BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A0A0LHM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 114 PFSPHDLASLLSTHGLC--AIPSIPQQSKSKGPAHAKSKKSKLQRELQGLYSSIHYDKTA 173
           P S  D+A +L  HGLC  A+PS+P + K+K P    +K++KLQR+LQ L SSI YDKT+
Sbjct: 183 PISLRDMAFILLQHGLCVMAVPSLPLK-KAKKPCTDNNKRNKLQRKLQTLQSSICYDKTS 242

Query: 174 TLAIREGTSVAQ 184
           +L  R+G+   Q
Sbjct: 243 SLDNRKGSEAIQ 253

BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A0A0KPT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314850 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 2   TTSYGGWIDLYHLPVTLWTEAIFKFIGDFCGGYLHPSNQTER 44
           T SYGGWID++ LP  L  E I KFIG+ CGGY+  +NQT R
Sbjct: 93  TASYGGWIDIFDLPPILCYEQIVKFIGNHCGGYVGCANQTGR 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05133.15.2e-1342.66hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa][more]
KAA0050510.13.9e-0839.55hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa][more]
KAE8648340.16.8e-0559.52hypothetical protein Csa_023105, partial [Cucumis sativus][more]
TYK14201.11.5e-0457.50hypothetical protein E5676_scaffold5G00230 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZG42.5e-1342.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U5M31.9e-0839.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KND38.7e-0654.76DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G467400 PE=... [more]
A0A0A0LHM73.3e-0548.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1[more]
A0A0A0KPT13.3e-0559.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G12340.1Clc01G12340.1mRNA