Clc01G12340 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTACATCATATGGGGGTTGGATTGATCTTTACCACCTTCCAGTCACCCTCTGGACTGAAGCCATATTCAAATTTATCGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGGTCTAAACCTCTCATTTGTTCACATCAAAATCAAAGAAAATTAGTGTGGCCTCATTCCTTGTGAAGTTTGCCTTCCTATTGAAGTCGCGGGACCCGCATCACCGTTTCCATCATTGCCCCCAATCTAATATCTCCGGGCCGGCGAGATGATTTGAAACTGACGCACGAAGCTAGCATTAATGGTTCGGCTGAAATTGTGGATCACAATCAATTTCGAAGGATTAACAAGGGTAAATTTATTGTCGAAGATACAATCCAAGCCGAAATGCCCTCTCTCTCCCCATATTTGGAGCATCCTTTTGATTAAGTTTCTCTCTCTCCTAACCATCAACCAAAGCCTTTGACCAAATCTCCACAAATTATGGAAAATAATATCCCTCTTTCTCCTCAAATAACTGAATCACCCACCCCCCTCTCTCCTCCAATTAAGTGAAATTTAATCATCTCTCCTCAGCCAAATACATCGGTGGACCCCCCTCTCGAAATACAATCTTCTTCCACACTATCGGTCAACCCTAGCCGAAATACCCCTTCCTTTATTTTCCATAATCAGAATCTCAGCGCTGAAAATTCAGCATCTCCTTCCATTACAAAACCTTCTCTCTCCACTGTCACCTTTCGTGAGGGTCCCACTAATCTCCAAGTTGGTCAATCTTTCTCCACATCAGTAGGAAAACAGAATCTTCCCTTTGCTGGATCTAACACAAAAGCCTACCTTTCCAGCCTGCAAATGATGTGGCACTACTAATCCGGCTGATGTTGAAGAATTTACCCCCTGCCCTCTTGACATGGCCATTTATGGTGATGAACCGGATGAAACTCATAACTTACCACTATACACTTTTCCTCCTCTCCCATCGGACATTAGTCCTCAAGATCATATTTTGGGGCCCACTCCATCACAAAATATGACAGCTCCTTACAGCCCCTCTTTTTCGAATTATGAACAATCGGCCCCAATCTCATCAAACTTACCATTCAGCCCCCATGACCTTGCCTCCCTACTGTCTACCCATGGCTTATGTGCCATCCCCTCCATTCCTCAACAATCCAAATCCAAAGGTCCAGCGCATGCTAAAAGCAAAAAATCTAAGCTACAAAGAGAGTTGCAAGGCCTTTATTCCTCGATACACTATGATAAGACAGCAACATTGGCCATTAGGGAGGGAACTTCTGTAGCTCAATGA ATGACTACATCATATGGGGGTTGGATTGATCTTTACCACCTTCCAGTCACCCTCTGGACTGAAGCCATATTCAAATTTATCGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGAATTTACCCCCTGCCCTCTTGACATGGCCATTTATGGTGATGAACCGGATGAAACTCATAACTTACCACTATACACTTTTCCTCCTCTCCCATCGGACATTAGTCCTCAAGATCATATTTTGGGGCCCACTCCATCACAAAATATGACAGCTCCTTACAGCCCCTCTTTTTCGAATTATGAACAATCGGCCCCAATCTCATCAAACTTACCATTCAGCCCCCATGACCTTGCCTCCCTACTGTCTACCCATGGCTTATGTGCCATCCCCTCCATTCCTCAACAATCCAAATCCAAAGGTCCAGCGCATGCTAAAAGCAAAAAATCTAAGCTACAAAGAGAGTTGCAAGGCCTTTATTCCTCGATACACTATGATAAGACAGCAACATTGGCCATTAGGGAGGGAACTTCTGTAGCTCAATGA ATGACTACATCATATGGGGGTTGGATTGATCTTTACCACCTTCCAGTCACCCTCTGGACTGAAGCCATATTCAAATTTATCGGAGATTTTTGTGGAGGCTACCTTCATCCCTCTAATCAGACTGAAAGAGAATTTACCCCCTGCCCTCTTGACATGGCCATTTATGGTGATGAACCGGATGAAACTCATAACTTACCACTATACACTTTTCCTCCTCTCCCATCGGACATTAGTCCTCAAGATCATATTTTGGGGCCCACTCCATCACAAAATATGACAGCTCCTTACAGCCCCTCTTTTTCGAATTATGAACAATCGGCCCCAATCTCATCAAACTTACCATTCAGCCCCCATGACCTTGCCTCCCTACTGTCTACCCATGGCTTATGTGCCATCCCCTCCATTCCTCAACAATCCAAATCCAAAGGTCCAGCGCATGCTAAAAGCAAAAAATCTAAGCTACAAAGAGAGTTGCAAGGCCTTTATTCCTCGATACACTATGATAAGACAGCAACATTGGCCATTAGGGAGGGAACTTCTGTAGCTCAATGA MTTSYGGWIDLYHLPVTLWTEAIFKFIGDFCGGYLHPSNQTEREFTPCPLDMAIYGDEPDETHNLPLYTFPPLPSDISPQDHILGPTPSQNMTAPYSPSFSNYEQSAPISSNLPFSPHDLASLLSTHGLCAIPSIPQQSKSKGPAHAKSKKSKLQRELQGLYSSIHYDKTATLAIREGTSVAQ Homology
BLAST of Clc01G12340 vs. NCBI nr
Match: TYK05133.1 (hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa]) HSP 1 Score: 85.5 bits (210), Expect = 5.2e-13 Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0
BLAST of Clc01G12340 vs. NCBI nr
Match: KAA0050510.1 (hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa]) HSP 1 Score: 69.3 bits (168), Expect = 3.9e-08 Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 0
BLAST of Clc01G12340 vs. NCBI nr
Match: KAE8648340.1 (hypothetical protein Csa_023105, partial [Cucumis sativus]) HSP 1 Score: 58.5 bits (140), Expect = 6.8e-05 Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0
BLAST of Clc01G12340 vs. NCBI nr
Match: TYK14201.1 (hypothetical protein E5676_scaffold5G00230 [Cucumis melo var. makuwa]) HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A5D3BZG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00370 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13 Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 0
BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A5A7U5M3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001530 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08 Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 0
BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A0A0KND3 (DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G467400 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 8.7e-06 Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 0
BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A0A0LHM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05 Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 0
BLAST of Clc01G12340 vs. ExPASy TrEMBL
Match: A0A0A0KPT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314850 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05 Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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