Clc01G12325 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAATATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAGTCACTGAGAATTGTACAGATGACAGATGGCGCTGGTTCCAGGTATAGTCATTATGTTGTTTTAATGGTATTGTTTGGGGTTTTAGAAATTACCTTAAACTTATCATTTAAACAACGTTTCTTCACAGAATTGCTTAGGTGCACTTGACGGAACCCACATAAAGGTAAATGTCAGTGCAGCTGATCGACCACGCTATAGGACTAGAAAGGGCGAGATTGCAACGAACGTTCTTGCTGTATGCAATCAAACGTGTGAGTTCATATTCGTTTTCGCTGGATGGGAAGGATCAGCTGCTGACTCGAGGGTTCTGCGAGATGCAGTTTCTAGGCCAACTGGATTGAAAGTCCCAAGGGGTTAGTTTGTAGATATCGTTATACCCTTGCATACAAAAAAAAAATGTTCGCCAAGTGATAACTTGGCCCAATTTCGCAGGATACTATTATCTATGCGACGCCGGTTATCCAAACGCTAAGGGATTTTTGGCTTCTTATCGGGGACAAAGATACCATTTGACTGAGTGGCGTGGAGGGAGTCCGCCAACAAGCCCTATGGAGCTTTTCAATATGAGACATTCATCTGCCCGTAATGTTATTGAGAGAGCGTTTGGGATGTTGAAAGGTCGATGGGCAATCCTCCGAGGAAAATCATACTACCCGGTTGATGTGCAGTGCAAGACCATACATGCATGTTGTCTCCTGCATAATTTAATAATTCGAGAAATGGGACCAAATTCCTTACTCGACGAAGGAGAGGGAAGTCAGGGGGGACCAATACCAACAGACAATGAGAATATCGAATTTGTGGAGACATTTGATGCATTCACTGCATGGAGGGATAATATCGCAAATCAGATGTGGGCTGAATGGAATGCAAACTAAAGACGCCCTTGGGAAATTCTATGTATTCCTTTTTTTTTTTTTTGAGAAGATTGGAATTGAATTTTTTTTGTATGTATAAAGTATTTTGTTGGTGCCCGACGTGTACGCTTTGCAATTTTTTGTATAACATATGTGAATATTTCAATGTTATAGTGTGAATGGATTGATTCCCCACATTTTTTTCGCAATGTTATATCCTGCATGTGTTGACAAATTCAATTTCAGATGGAAGCATCCGGGTCACGCGCAAGAGCCACAAAACATATATGGACGGATGAGGAGGATAGAATCCTTGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGATGAGCTGATAACGAGACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGTCTAGGCTGTAGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAATATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAATATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTFQPGFLSNILRMMQQRIPGCSIQVSPHLESRWVWVECGAQMY Homology
BLAST of Clc01G12325 vs. NCBI nr
Match: XP_030483302.1 (protein ALP1-like [Cannabis sativa]) HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15 Identity = 42/54 (77.78%), Postives = 52/54 (96.30%), Query Frame = 0
BLAST of Clc01G12325 vs. NCBI nr
Match: KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15 Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Clc01G12325 vs. NCBI nr
Match: XP_008466673.1 (PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo] >KAA0063228.1 putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13478.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14 Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = 0
BLAST of Clc01G12325 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14 Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0
BLAST of Clc01G12325 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14 Identity = 41/56 (73.21%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15 Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A803QNC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15 Identity = 42/54 (77.78%), Postives = 52/54 (96.30%), Query Frame = 0
BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A2N9H5S7 (DDE Tnp4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34871 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15 Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A2N9F8R4 (DDE Tnp4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11141 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15 Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A2N9FLC7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15416 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15 Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0
BLAST of Clc01G12325 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 3.2e-07 Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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