Clc01G12325 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G12325
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionDDE Tnp4 domain-containing protein
LocationClcChr01: 21650599 .. 21652184 (+)
RNA-Seq ExpressionClc01G12325
SyntenyClc01G12325
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAATATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAGTCACTGAGAATTGTACAGATGACAGATGGCGCTGGTTCCAGGTATAGTCATTATGTTGTTTTAATGGTATTGTTTGGGGTTTTAGAAATTACCTTAAACTTATCATTTAAACAACGTTTCTTCACAGAATTGCTTAGGTGCACTTGACGGAACCCACATAAAGGTAAATGTCAGTGCAGCTGATCGACCACGCTATAGGACTAGAAAGGGCGAGATTGCAACGAACGTTCTTGCTGTATGCAATCAAACGTGTGAGTTCATATTCGTTTTCGCTGGATGGGAAGGATCAGCTGCTGACTCGAGGGTTCTGCGAGATGCAGTTTCTAGGCCAACTGGATTGAAAGTCCCAAGGGGTTAGTTTGTAGATATCGTTATACCCTTGCATACAAAAAAAAAATGTTCGCCAAGTGATAACTTGGCCCAATTTCGCAGGATACTATTATCTATGCGACGCCGGTTATCCAAACGCTAAGGGATTTTTGGCTTCTTATCGGGGACAAAGATACCATTTGACTGAGTGGCGTGGAGGGAGTCCGCCAACAAGCCCTATGGAGCTTTTCAATATGAGACATTCATCTGCCCGTAATGTTATTGAGAGAGCGTTTGGGATGTTGAAAGGTCGATGGGCAATCCTCCGAGGAAAATCATACTACCCGGTTGATGTGCAGTGCAAGACCATACATGCATGTTGTCTCCTGCATAATTTAATAATTCGAGAAATGGGACCAAATTCCTTACTCGACGAAGGAGAGGGAAGTCAGGGGGGACCAATACCAACAGACAATGAGAATATCGAATTTGTGGAGACATTTGATGCATTCACTGCATGGAGGGATAATATCGCAAATCAGATGTGGGCTGAATGGAATGCAAACTAAAGACGCCCTTGGGAAATTCTATGTATTCCTTTTTTTTTTTTTTGAGAAGATTGGAATTGAATTTTTTTTGTATGTATAAAGTATTTTGTTGGTGCCCGACGTGTACGCTTTGCAATTTTTTGTATAACATATGTGAATATTTCAATGTTATAGTGTGAATGGATTGATTCCCCACATTTTTTTCGCAATGTTATATCCTGCATGTGTTGACAAATTCAATTTCAGATGGAAGCATCCGGGTCACGCGCAAGAGCCACAAAACATATATGGACGGATGAGGAGGATAGAATCCTTGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGATGAGCTGATAACGAGACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAGAGACAGTACAGCGCGATCGCTGAAATGTTGGGTCTAGGCTGTAGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA

mRNA sequence

ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAATATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA

Coding sequence (CDS)

ATGGAGGAAATGGTGGCTATCTTCTTGCACATAGTCACACACGATGTCAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGAGACGGTTTCCAGGCACTTCAATATTATGCTCAATGCAATATTGAGACTGTACGACGTTCTATTGCGGAAACCAAAGCCAACTTTCCAACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGTGGGTTTGGGTAGAATGCGGAGCGCAAATGTATTGA

Protein sequence

MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTFQPGFLSNILRMMQQRIPGCSIQVSPHLESRWVWVECGAQMY
Homology
BLAST of Clc01G12325 vs. NCBI nr
Match: XP_030483302.1 (protein ALP1-like [Cannabis sativa])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 42/54 (77.78%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKP 55
          +EEMVAIFLHI+ HDVKNR++RRQFARSGETVSRHFN++LNA+L L+D+LL+KP
Sbjct: 27 VEEMVAIFLHIIAHDVKNRIVRRQFARSGETVSRHFNMVLNALLHLHDLLLKKP 80

BLAST of Clc01G12325 vs. NCBI nr
Match: KAA0050107.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
          +EEMVAIFLHIV HDVKNRV RR FARSGETVSRHFN +LNA+LRL+++LL++P P
Sbjct: 27 VEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLRLHEILLKQPDP 82

BLAST of Clc01G12325 vs. NCBI nr
Match: XP_008466673.1 (PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo] >KAA0063228.1 putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13478.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTF 59
          +EEMVA+FLHI+ HDVKNR+++R+F RSGETVSRHFN++L A+LRL+D LL+KP+P F
Sbjct: 27 VEEMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNLVLLAVLRLHDELLKKPQPNF 84

BLAST of Clc01G12325 vs. NCBI nr
Match: KAA0041970.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
          +EEMVAIFLHIV HD+KNRV RR FARSGET+SRHFN +LN +LRL+++LL++P P
Sbjct: 27 VEEMVAIFLHIVAHDIKNRVARRHFARSGETMSRHFNAVLNTVLRLHEILLKQPDP 82

BLAST of Clc01G12325 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 41/56 (73.21%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
          +EEMVA+FLHI+ HDVKNR+++++FARSGETVSRHFNI+L AILRL+D LL+KP+P
Sbjct: 27 VEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILRLHDELLKKPQP 82

BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A5A7U6W3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001210 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
          +EEMVAIFLHIV HDVKNRV RR FARSGETVSRHFN +LNA+LRL+++LL++P P
Sbjct: 27 VEEMVAIFLHIVAHDVKNRVARRHFARSGETVSRHFNAVLNAVLRLHEILLKQPDP 82

BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A803QNC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 42/54 (77.78%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKP 55
          +EEMVAIFLHI+ HDVKNR++RRQFARSGETVSRHFN++LNA+L L+D+LL+KP
Sbjct: 27 VEEMVAIFLHIIAHDVKNRIVRRQFARSGETVSRHFNMVLNALLHLHDLLLKKP 80

BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A2N9H5S7 (DDE Tnp4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34871 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
          +EEMVA+FLHIV HDVKNRV++RQFARSGET+SR FN +LN+I+RLYD LL KP+P
Sbjct: 41 VEEMVAMFLHIVAHDVKNRVIKRQFARSGETISRQFNKVLNSIIRLYDDLLEKPEP 96

BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A2N9F8R4 (DDE Tnp4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11141 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1  MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
          +EEMVA+FLHIV HDVKNRV++RQFARSGET+SR FN +LN+I+RLYD LL KP+P
Sbjct: 41 VEEMVAMFLHIVAHDVKNRVIKRQFARSGETISRQFNKVLNSIIRLYDDLLEKPEP 96

BLAST of Clc01G12325 vs. ExPASy TrEMBL
Match: A0A2N9FLC7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15416 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 0

Query: 1   MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKP 57
           +EEMVA+FLHIV HDVKNRV++RQFARSGET+SR FN +LN+I+RLYD LL KP+P
Sbjct: 452 VEEMVAMFLHIVAHDVKNRVIKRQFARSGETISRQFNKVLNSIIRLYDDLLEKPEP 507

BLAST of Clc01G12325 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-07
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0

Query: 1   MEEMVAIFLHIVTHDVKNRVMRRQFARSGETVSRHFNIMLNAILRLYDVLLRKPKPTFQP 60
           +E  +AIFL I+ H+++ R ++  F  SGET+SRHFN +LNA++ +        K  FQP
Sbjct: 74  IEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAI-------SKDFFQP 133

Query: 61  GFLSNIL 68
              S+ L
Sbjct: 134 NSNSDTL 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030483302.12.3e-1577.78protein ALP1-like [Cannabis sativa][more]
KAA0050107.12.3e-1576.79putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
XP_008466673.11.9e-1468.97PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo] >KAA0063228.1 put... [more]
KAA0041970.11.9e-1471.43putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK17906.1 putative nucleas... [more]
XP_008441953.13.3e-1473.21PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U6W31.1e-1576.79Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A803QNC51.1e-1577.78Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9H5S77.2e-1575.00DDE Tnp4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34871... [more]
A0A2N9F8R47.2e-1575.00DDE Tnp4 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11141... [more]
A0A2N9FLC77.2e-1575.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15416 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G41980.13.2e-0740.30CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..57
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G12325.1Clc01G12325.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding