Clc01G12060 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G12060
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CASP-like protein
Location	ClcChr01: 20094318 .. 20099139 (-)
RNA-Seq Expression	Clc01G12060
Synteny	Clc01G12060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATGGCAAAGCTGAAATTGAAGTTAATCATGTGAATCTTTAGGTAAAAGCAGCGCTTACAGGATTGTTAAGCAATCTGGAGCAGCATGAAGTGATTTTGGAATAACTAGAGAACGAAGAAGAGTTAAGCCTTGAAATTTTGAGATAAGCTGTGAAACTCAATTATCTACAAGTTTGTAGAAGGGAAGAAGTTCTAAATCCATCTGAATTTATGACTTTTAACAGATAGAAATAAGAACAAGAGGAAAGGAAGAAATCACAGTTGCAGGGTGCCGCTAAGAACCAAGTATCATTGCGCTGTTTAAGTACTGATAGCGAGACGAGTGTTGCTGAGACGCAAAGGAGTCTTCCGTCTCACAAAACTCGCTAGATATCGCTGGGTGTCGTTACTAAGGTAAGGTAACGCTAGTGTCGCTCAACCTAGTATCGCTAGTAACAGGTTCTGTTGGGTAGTACTGCTAGGAATCTCGCTTATGATGTTTGTTTCGGGAAAAGGGGAAGATTAAATGATAAGTAACAATTAGAATTTATGCATATTTAATGATCAAATGAAAGACAATGTAATGCAAGGTAAAATGTCTATTTCAGGCCAGGAAGAGATAGGGAAGGCGTATAACCCACGCAAGGCCTAGGAAGAGTAGTGAGTGACTCCTTTATTCTTCAATTCGATTTTTATTAAAAATGTTCTTATGAAATATGGTTTTGCGATGAACTGTTTAAAATGCATAATGTTTGATTGTATTACTCACAAGGCATGTTATATGTTTTCTAAAGTTGATAGAAAACATTTTCTTTTATGAAATGTTATTGAATAAAGATCTGTATGATTTTCTATGAAAGGATTTTCATATGAACTGTTATGTGAGTGGATTTCTAAAATGTTTTAGAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGAAGGACATGAGAAGGTACTTGGGCAACCTGTCATATTCCTATGTGCACATAAAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGGGATGATTTCGACATTAGATGTGTTGAGCCTTGCTCCAACCCCAACTAAGGTTGTTTTCGACGTTGAGAATGTTGAGCATTGCTCCGCCTCAACTAAGGGAAAAGTTTGAAAAACCAAACTGTTTACTGTTTAACTTCTTTTGGAAAACAATCATATACGATTTAAAATCGGATTCATGAGATTGATAGATTTGTGGAAAGTATGCTTTAGCTGAATAATATGTTAAATCCTCGTTTATTTGTTCATATGTAACATGTCTGTTTTCAATAAATGTTCGTTTTACAAAGATTAGTCACTCACTGGGCTGTTAGCTTATGTTTTCAATGTTTTCTTCCCCCCCCCCCCCAAAGTAGCAAGGACGTTCCCAGTGCTTAGCCTACTTCAGCTCACCCTGCCTAAGTCTCGAGTTCTCAAAATTCAGTCACGTCTGAGAGTTGTACGTTATATAACCTTATGTAGGTGGCATGTAGATCTAGTTGTGTAAAGAGTGGGGATTGTAATGTGGTTTTGTACAAATGTACGGTGGATCTATGGAAGTTTAATTATGTTATGTGATAAAAGTGTACTCTGTGCAGGAAGAATTGTTATATTATGATCATGTGTAGTATGGCTGAGTTCTATGAATGTATATGTATGAAATGTGTGTACAGGAAGTTATGTAGGATGGGACAATATGCGTCACAAGAGGGGTGATGTTTATTGTCTTCACATTCCCTTTCAGGATAAGTAGGTAATCCGGGAGGGGGTGTGACACAAATAAATAGTTATCAAACAAATTTATGTTTCTGTTTCTTTTTTCCAAGAAATAGGAATAATTATAAAACATAGTCTTATTTCTTGTTTAAAAAAAAAACAGGAAACAAGCAACAAGGAACGAGAAACAAAAAGCAAGAAACAAGAACATTATCAAACGGACGCTTAGCTTCTTGTTTTTCTTTTGCAAGTTCCACCTTGACCCTGAAAGAGAAAGCAGCCACTTAGAGAACCGAGAGTACCACCACCACTCAAAGATCCATGCACGAAACATTTCAAGGGAGAGTTTTTGTTCCTTTGTCTTTTCTTTAATGTGTTCTGATTAGAGATATATTGAGGAGAACGTATCATTTTAGGTTATGGTAGTTGGATATGCATGTCTAGCAAATCCTTGAGCACTTGAGCTTGGACCTTGTGGTTGGGTTTTAAGATGACGTTGCATGTTCTGTGATGATGACGACCGGTGATATTCTTTAGTTAATTTCTATTCGCATTAGTTTTTATTCATGAGAATGCATGCATGATTTTGGGTCAAATTAAAAAAAAAAAATATTTCTTGAATCCCTTATAAATTTATTGAGTACACCAATGTATCATTAGTCTATCTAACATCAATCACACATTTTAACGATGAATTATTGGAATACATTTTTTTTTAAAAAAAAATCATTAGACTATAAGTTTAGTTTCCATTATGTGTTTTACCATTATTGCGAGTGACCCCTTTTTTTAATAGTACTTGTAATTAATTATCCAATCAAAATGATTATTTTATGATTAATTATCATATTAACATTATATAAGGTTACAAAATTAATTTTATCAAATAATTATAAACATAATTTGTTACTTTCAAATATTATAAATATTATAACAGGTACAACTTTTACTACAAGCAATCTTATTCCAAGACATGTTATCTGCATCCGTCATCCCACTGTCATTTTTCTCTTGTTCTTCTCTCTAGAAAAATTTATTTAATAATAATAGTAAGGGTAAATTGCAAAAATTACCCATGTATATGGTGCTAGTAACAATTAAACTACTAAACTTTCAAATTGAAAAATTAAACCTTCATACTATTAAAATTGTTAAAATTGAATCCCTAAACTTTCAAGTAAAAAAAATAAACCCTCAAACTTTAATAAAACAAGTTAAACCTTGAAACTCTTGAAAATTTAGGGGTTTAGGAGTTTAGGGGTTGTTTGGATTGAGGGAATTGGGATGGGAATGGAGAAGAGATACACATCCTTTTATTTGGTATATGTTTTGAAGTTTTAACATGGGAATGCATTCTATATACCCATGAAGGATACCATCCAAAAGGTGTGTGTTTTCTTAATGCCCACCCTCTATCCTCCTTTAATACATGGAGTTTATTTTTTTTATTTTATATATTATTAAAATTAATTAAAATTAATTAAAATATGAATATTAAATTTATACTTTAAAAAATTATAATAAATCAATCAATTAATCATATATATATACACACTTATTTTTTCAATAAACTTTAAATAATTGATGCATTAATACTATCAATTTATTAATAAATTATATATGTGGCTAATTAATATCATTATGATTAATATTTTACGAGACTATTTTGTAATAATTATAATTATTTTATCATTGATTAATTATAATTAATTAATTTTTAATCACAGAATGTTATGTTTGTTTTCTCAAACTAATTTTGATTGTTTTATTAATCAATACATCATAATTATATAAATTCATCAAATTGATACATCAAATTATGATTAAAGGTTGTTTTCAAATATAATAAAATGAGCCAAACTATTTACAAATATAGAAAAATTTCTATTTATCAGCGATAGATTATGATAGGTTTCTATCAATAAAGTGATAGAAGTCTATCGCGATTTATTATTATTGAAAATGAAAATTTTCTATATTTGTAAATAGTTTGATGTTTATCTATTTATAATAATTTTCCTAATTTTGATTATAAATTACTCATTTTACAAATACTTGTAATTAATATTTTAATTAATATTATAATTTGATTGTTAAATAATTAATTTTGCTTAAAACTTTGGATTGAATTTATTGTTCATCAACTAATTTATATAAAATTTTATAGAGGTGTTCATGATTAATTTTATAAATTGAATACAAAGATAATTTGTTTCAAAAATATTTTGATAATATTTCCATGTGCAATAAATTACAATTATTCTTGATAAATCTTATTCCTATACTTTTTATTTTGAGACATTCTTAATTTATAGACATCTATAAAATCTTAAACCGAACCATCCTTAATTGTGACTATTACCATGGTTGAAGGGTGTTGTTTGCAATTTACCCTAATAGTAATACTGTTAGAGCTAGCCCCCAAGTTAGTTTTCCCTCTTTCGGGTGCAAAAACCCTAAAATAATTTTCCCTCTTTTCAATTCATTCCTTTCTTTTCTTTCTTTTTGTTGCTCTCCACTCGTTTTTTCTTCTCCACTTCCTTCCTTCCTTCCCAGATCCAACATTCCGAGCTTTCTTCTCCTCCAGGTGAGCATCTTACTCCTCGTCAGTCAACTTTACCATTTCCCCCTTTTAATTCTTCCTTTTTTCTTTCTGGGGTTGTTGATCGGATCTTTTCTTTTCATTTCTCCGGGTTTCTCTCTGCTTTAATCCAGAAATCAGAAATGTTTTCGGTAGATAATTAATTGTCTCCTTTTTCTGCCTTTGATCATCGTATAATTCTCTGTGTTTATCGATTTTTCTTTTTGATACATGGTTTTTGATTGCAGCTTGGAATTGTGGAAGCGCCTCTCTGATCATTTCCGGGTAAATTCGACTACTTAAAAGAGGGTTTTCTTGTTTAAAGTTCGAGGTCTGGGTCTCATGAGAATTTTTAGGGGAATGCAGAAATCGTTTTGCAAGGAGCAGCAGAAGGAGCTGGGCTGGAAGAATATTTTCTGCCGAGGGTTGGGTGTCACTGCTCCCAAAGCAAGAACTCGTGACAAACCCATGTCTACTGCCTTGTTCTTCACTCTCTGA

mRNA sequence

ATGAAGGATGGCAAAGCTGAAATTGAAGTTAATCATAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGAAGGACATGAGAAGGTACTTGGGCAACCTGTCATATTCCTATGTGCACATAAAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGGGATGATTTCGACATTAGATGTGTTGAGCCTTGCTCCAACCCCAACTAAGGTTGTTTTCGACGTTGAGAATGTTGAGCATTGCTCCGCCTCAACTAAGGGAAAAATCCAACATTCCGAGCTTTCTTCTCCTCCAGGTGAGCATCTTACTCCTCGTCAGTCAACTTTACCATTTCCCCCTTTTAATTCTTCCTTTTTTCTTTCTGGGGTTGTTGATCGGATCTTTTCTTTTCATTTCTCCGGCTTGGAATTGTGGAAGCGCCTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGCAGAAGGAGCTGGGCTGGAAGAATATTTTCTGCCGAGGGTTGGGTGTCACTGCTCCCAAAGCAAGAACTCGTGACAAACCCATGTCTACTGCCTTGTTCTTCACTCTCTGA

Coding sequence (CDS)

ATGAAGGATGGCAAAGCTGAAATTGAAGTTAATCATAGGAGGCTCAGTGCTCAAGGACACGAGAAGGCACGTGAGTTTCCCCAGGACCCAGTACTGAAGGACATGAGAAGGTACTTGGGCAACCTGTCATATTCCTATGTGCACATAAAGGTTGATTTGGCTGGTGCGTCGAGTTTGCTCCGCATTGAGCCAGGGATGATTTCGACATTAGATGTGTTGAGCCTTGCTCCAACCCCAACTAAGGTTGTTTTCGACGTTGAGAATGTTGAGCATTGCTCCGCCTCAACTAAGGGAAAAATCCAACATTCCGAGCTTTCTTCTCCTCCAGGTGAGCATCTTACTCCTCGTCAGTCAACTTTACCATTTCCCCCTTTTAATTCTTCCTTTTTTCTTTCTGGGGTTGTTGATCGGATCTTTTCTTTTCATTTCTCCGGCTTGGAATTGTGGAAGCGCCTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGCAGAAGGAGCTGGGCTGGAAGAATATTTTCTGCCGAGGGTTGGGTGTCACTGCTCCCAAAGCAAGAACTCGTGACAAACCCATGTCTACTGCCTTGTTCTTCACTCTCTGA

Protein sequence

MKDGKAEIEVNHRRLSAQGHEKAREFPQDPVLKDMRRYLGNLSYSYVHIKVDLAGASSLLRIEPGMISTLDVLSLAPTPTKVVFDVENVEHCSASTKGKIQHSELSSPPGEHLTPRQSTLPFPPFNSSFFLSGVVDRIFSFHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL

Homology

[Close]

BLAST of Clc01G12060 vs. NCBI nr
Match: KAG6583714.1 (hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 5.3e-19
Identity = 50/60 (83.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 141 FHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL 200
           F FS L+LW RLSDHFRKSFCKE QKELGWKNIFCRGLGVTAPKARTRDKPM    F TL
Sbjct: 16  FFFSSLDLWNRLSDHFRKSFCKE-QKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 74

[Close]

BLAST of Clc01G12060 vs. NCBI nr
Match: KAE8652815.1 (hypothetical protein Csa_023994, partial [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-18
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 140 SFHFSGLELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFT 199
           +F  S L+LWKR SDHFRKSFCKEQQ+ELGW NIF RGLGVTAPKARTRDKPM TA F T
Sbjct: 5   AFFSSSLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPMPTA-FLT 64

Query: 200 L 201
           L
Sbjct: 65  L 64

[Close]

BLAST of Clc01G12060 vs. NCBI nr
Match: KAG7019361.1 (hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-17
Identity = 47/55 (85.45%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 146 LELWKRLSDHFRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTALFFTL 201
           L+LW RLSDHFRKSFCKE QKELGWKNIFCRGLGVTAPKARTRDKPM    F TL
Sbjct: 7   LDLWNRLSDHFRKSFCKE-QKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 60

[Close]

BLAST of Clc01G12060 vs. NCBI nr
Match: TKR98526.1 (Casparian strip membrane protein [Populus alba])

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-05
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 150 KRLSDHFRKSF-CKEQQ-KELGWKNIFCRGLGVTAPKARTRDKPMS 194
           K L   FRKSF C  ++   LGWKN F  G+G+TAPKARTRDKPMS
Sbjct: 201 KSLDFFFRKSFRCDNKELNALGWKNSFSHGIGITAPKARTRDKPMS 246

[Close]

BLAST of Clc01G12060 vs. NCBI nr
Match: KAF5470938.1 (hypothetical protein F2P56_011422, partial [Juglans regia])

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-04
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 156 FRKSFCKEQQKELGWKNIFCRGLGVTAPKARTRDKPMSTAL 197
           FR+SF +E+ K LGWK  F +G+GVT PKARTRDKP++  L
Sbjct: 77  FRRSF-REEHKALGWKKAFSQGIGVTVPKARTRDKPINMVL 116

[Close]

BLAST of Clc01G12060 vs. ExPASy TrEMBL
Match: A0A4U5PQ38 (CASP-like protein OS=Populus alba OX=43335 GN=D5086_0000202630 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 150 KRLSDHFRKSF-CKEQQ-KELGWKNIFCRGLGVTAPKARTRDKPMS 194
           K L   FRKSF C  ++   LGWKN F  G+G+TAPKARTRDKPMS
Sbjct: 201 KSLDFFFRKSFRCDNKELNALGWKNSFSHGIGITAPKARTRDKPMS 246

The following BLAST results are available for this feature:

BLAST of Clc01G12060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583714.1	5.3e-19	83.33	hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652815.1	2.6e-18	80.33	hypothetical protein Csa_023994, partial [Cucumis sativus]	[more]
KAG7019361.1	1.7e-17	85.45	hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
TKR98526.1	9.7e-05	63.04	Casparian strip membrane protein [Populus alba]	[more]
KAF5470938.1	3.7e-04	60.98	hypothetical protein F2P56_011422, partial [Juglans regia]	[more]

BLAST of Clc01G12060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G12060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5PQ38	4.7e-05	63.04	CASP-like protein OS=Populus alba OX=43335 GN=D5086_0000202630 PE=3 SV=1	[more]

BLAST of Clc01G12060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G12060.2	Clc01G12060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane