Clc01G11950 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G11950
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionphotosystem I subunit O
LocationClcChr01: 19181662 .. 19185447 (-)
RNA-Seq ExpressionClc01G11950
SyntenyClc01G11950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTGAACATCCCACCACCACACACCACAAATAATTGTTTTTGTTTGATGAAAAATACTTTGATACATAAGTAGAAAACGGCCCACTTTATCCAAAAAATTCCGAGGTGTCAAAGCTTGATTCATCAGAAATTGATTCACTATCCAAAGCAATCAAATCCACAATCCCCAAAATCTCATCCACACAAATTTCCCAACAAAATCCCAACCTCTTTCCCTCACTTCTACAAAACAACCGCACCACCCAAGCTCTGATCCGCACCAATCCTCTCAAAAAATGGCCACCGCCTTCGCTACCTCCTCCTCCGTCGTCGGTCTCGGAACCTCCTCCCTTTCTTCTCCTTCCTCCAGAACTCCCCGTCTCGTCTCCGGTAATCCACCGCTACCTCCAATCAACCCATCTCCAACTTTCTGCTGCACATCTGTAATTGATTTTGGGCATTTTTCTTGTCTTCCCAGGGTTCGTCAGGTCACCGCTCGCCGCCAGGAATCCTCTCGCTGTGGCACGTGCATCCGGCGGAAGATTCACCTGGTATGTGATTAGTGATTGTCCGATTTGGAGAATGATTGGTTGTTTGTTGTGATTTTGATTTTGTGTGGGGGAATGAAGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGCACTGATCGGGTGGATTGCGCCATCGAGCATTCCGGTAATCAATGGGAAGAGCTTGACGGGACTATTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCTTCTCCACCTGCCCTCACTTCTCAGTTCTGGTAAATTACATTTCCCGCTAACTTCTTTTTTTTTTAACAAAAAAGAATTAATTTAATTTTAGTATTTAGGCCATTTCATATTTATTTGATTTTTTATTTTTGAAATTTAAAAAACGAGTGAAATTAAAAGAACAAAGTAGTTTTTGGTTTTTACATTTTAATTAAGAATTCAAATATTTCTTTTAAATAGGAGGAATTATGGTAAAAGATTTGGGAAGAAATAAATATGAACTTCTAAAATAAAAAATTAAAATTGAAATGGTATCTAATGAGGTCTTATTTATTTGATTTGGATTTGAATCTCCAATTTCAAAATTCAAATGAAAATATGTCAATTATTATTTGCGCTATAATTGCTTGCATTCAAATTTTGCTTGGATTTGTACTCATTCTACTCTAAACTCTTTATAGATTATTATTTTTTCTAATTAAAAATGAGTATGATATAGTTAAAAAATGTAGGAGAAACATGAAGCACTTTAAAATTGTAGTAATAACATGATGCACGTTTGTAACTAAAACTATATAATCTCTTTATTAAATAATTAAATATCAATCAATAATAATGACGAACTTAAATATTTTGGACAAATATGAATTTATGTCTTCAAATTTTGGGAGTTGTATTAATTAAAATTTTGAACTCATAACTTTATCAATTTAAATCATGAACTTTCTTAAGTGTATCAATAAGTCTTTCTGTAGATTTCATTGGATTAATATTGTGGAAACTTATGATTTGAGCCAATTAAACCCTCAATTTTCATTACTAAATTAATTTAGATATGTCATTACAATTACGTTTGAAAATCATATATGCATTGATTCTTAAACGCGTGTACACTTCTTCAAATGTCGATTTTACAAAACGAACAATATTATAGTAAATGCATGAATGATTATCAAAGAAAATTTTGACCAAGAGTCTAAATTGGTCAATTTATGAAAGTTTAGGGGTTTAATTAATATAATTATGAGTTTCACACAAGATTTTTTAAAATGGAACGTAATGGAAGGTGTAAATTGATACACGTACAAAAGTTAAAAGTTTATATTAATACTTTCAACAATAAATTTTTTATAACTATTTGACTTTTGTTTTGTCATTCACCTTCACCAATGTTTTTGAAAATCAAACCAACATTTAAAAATAAAAAAAATGTAGTTTTTAAAAATTTATTTTTATTTTAGAATTTGACTAAGAATTAAAGTGTTTCTTTAAGAAATTTACCTACCCAAAATGGAATATATGAGAAATTAAACATAATTTCAAAAATAAAAAATAAAAAATTAAATTGTTACTTATTGAGGCTGTAGTTATTAAATTTTTATTTTATTATTATTATTTTTTGTTGAAATTTGGTTAAAAGACCTAATGTTTACCTTGGGAAGAGGAAAACCATGATTAAAGAATGGTGAGAAAACACAAAACCAAAAAGTTAAATAGTTATTCAAGTAAGCCTTAAATTTTTTAAAAATCTTTAGAAATTATTTAGAAGTAAGAATTATTTAAGGTTGAATTACCATGTTCATCCTTTACTGTTGAATTTGAGTTTTTCTATATTTAAATATTTAATTTCAGTTTTTTAGTCTCAATATATCTTAAATTTAGTCACCACCATTAGTTTATGGTTGGTTTTTTATAAAACTTTTGTTATCTATTATCATTTTTCTATAAATTTTAAAAACATATTTATATATTATATTTATTTGTATGAAAATTATTATTATTATATAACCAATTTTAATGAAAATTAACTCCGAAGAACAAAGTTCAAAGTTTATTAAAAATACAGACTAAAATTGAATCCAACCTGGAACAACGACCAAAATGATATTTTAATTACAATGATTGAGATAAAATTAAAATGTGTGTATTTCAGGTTGTGGCTTATTACGTGGCACTTGGGCCTCTTCATAATGCTTACCTTCGGACAAATCGGGTTCAAGGGGAGGACCGAAGACTATTTTTCAAAGTGAAAATGTAATAATTCTTAAAAAGGAGAGGGAATTCTAGTATTTATTATTCATGTTTATAAGTTATAAGTAGTGTTTGTGGCCATCATTTTCTTCATGTAAATCGCAACCTCCAAATCTTGGTATAACCTTGTGTTTATTAATGAAATGCCGCCTCGCTAATCCTACTCAACTCAGTTGTTTGAACTATTAAGTTCAAAGGAAAAGTGATAAGTAACACTCGAGGACATGTGATATGAACGGAGGAACCTTAAACATGCAATATGAACATAAACAATGAGCCATACATGCTGCTGTCCAAGTTTACACTAGGCAAAGAAGAAGAATTATATGAAGTCAAGTGGAATTTATGAAGAATGAAGCTTCATTTAATGAACAAAGACTTCAAGCTACTTCAAATGGGATGTTATTTACTCTTAGATGGTTACAAATGCATGAAATATGGTTAAAAAATATTAATCTCGGATTTATTGTATTTATTAAATGTATTTTTCAGTTTTGAGTCATTTTATGTGATTTTATGTTACAATTTCATCATGGCTTATAATGGTCATTAATTATGAGTGTTATAACTCTTTGAATGCCTCATAGAATGTTTAAGGTTAGATTTTGAGACCTATATAATCCCATGTAATTATTCAAAAATGAGAGATGGAAGAGATTTGAAAATGTAGTAAAAGAGCCTTTGAGCTAGAAACCTTGTGCTATGTTTCTTTTGCGATTCTATGGTGTTTAGGTTGCATGTCCAAAACCATGCAAACTTGACTTGATCGATCTTGTTTGTGGAGTGATTCGAAGATCAAGGATCAATGGAAGCATGAATTTTTGTTCGATCCGTGGTTTTGTTGATCTTCTAAGTAATGACCATTATAAGTAACACTCGAGGACTCTGATACCAAATAATAAGTAACACTCAATGACTTAGATTTAACAACCTTGACGACAAACAAGACTTTTAGATCTCAAACTCAAACACTTGAAATTAAGATGATCTCAGCCCCTAGGAATGACTAGATGACG

mRNA sequence

ATCTGAACATCCCACCACCACACACCACAAATAATTGTTTTTGTTTGATGAAAAATACTTTGATACATAAGTAGAAAACGGCCCACTTTATCCAAAAAATTCCGAGGTGTCAAAGCTTGATTCATCAGAAATTGATTCACTATCCAAAGCAATCAAATCCACAATCCCCAAAATCTCATCCACACAAATTTCCCAACAAAATCCCAACCTCTTTCCCTCACTTCTACAAAACAACCGCACCACCCAAGCTCTGATCCGCACCAATCCTCTCAAAAAATGGCCACCGCCTTCGCTACCTCCTCCTCCGTCGTCGGTCTCGGAACCTCCTCCCTTTCTTCTCCTTCCTCCAGAACTCCCCGTCTCGTCTCCGGGTTCGTCAGGTCACCGCTCGCCGCCAGGAATCCTCTCGCTGTGGCACGTGCATCCGGCGGAAGATTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGCACTGATCGGGTGGATTGCGCCATCGAGCATTCCGGTAATCAATGGGAAGAGCTTGACGGGACTATTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCTTCTCCACCTGCCCTCACTTCTCAGTTCTGGTTGTGGCTTATTACGTGGCACTTGGGCCTCTTCATAATGCTTACCTTCGGACAAATCGGGTTCAAGGGGAGGACCGAAGACTATTTTTCAAAGTGAAAATGTAATAATTCTTAAAAAGGAGAGGGAATTCTAGTATTTATTATTCATGTTTATAAGTTATAAGTAGTGTTTGTGGCCATCATTTTCTTCATGTAAATCGCAACCTCCAAATCTTGGTATAACCTTGTGTTTATTAATGAAATGCCGCCTCGCTAATCCTACTCAACTCAGTTGTTTGAACTATTAAGTTCAAAGGAAAAGTGATAAGTAACACTCGAGGACATGTGATATGAACGGAGGAACCTTAAACATGCAATATGAACATAAACAATGAGCCATACATGCTGCTGTCCAAGTTTACACTAGGCAAAGAAGAAGAATTATATGAAGTCAAGTGGAATTTATGAAGAATGAAGCTTCATTTAATGAACAAAGACTTCAAGCTACTTCAAATGGGATGTTATTTACTCTTAGATGGTTACAAATGCATGAAATATGGTTAAAAAATATTAATCTCGGATTTATTGTATTTATTAAATGTATTTTTCAGTTTTGAGTCATTTTATGTGATTTTATGTTACAATTTCATCATGGCTTATAATGGTCATTAATTATGAGTGTTATAACTCTTTGAATGCCTCATAGAATGTTTAAGGTTAGATTTTGAGACCTATATAATCCCATGTAATTATTCAAAAATGAGAGATGGAAGAGATTTGAAAATGTAGTAAAAGAGCCTTTGAGCTAGAAACCTTGTGCTATGTTTCTTTTGCGATTCTATGGTGTTTAGGTTGCATGTCCAAAACCATGCAAACTTGACTTGATCGATCTTGTTTGTGGAGTGATTCGAAGATCAAGGATCAATGGAAGCATGAATTTTTGTTCGATCCGTGGTTTTGTTGATCTTCTAAGTAATGACCATTATAAGTAACACTCGAGGACTCTGATACCAAATAATAAGTAACACTCAATGACTTAGATTTAACAACCTTGACGACAAACAAGACTTTTAGATCTCAAACTCAAACACTTGAAATTAAGATGATCTCAGCCCCTAGGAATGACTAGATGACG

Coding sequence (CDS)

ATGGCCACCGCCTTCGCTACCTCCTCCTCCGTCGTCGGTCTCGGAACCTCCTCCCTTTCTTCTCCTTCCTCCAGAACTCCCCGTCTCGTCTCCGGGTTCGTCAGGTCACCGCTCGCCGCCAGGAATCCTCTCGCTGTGGCACGTGCATCCGGCGGAAGATTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGCACTGATCGGGTGGATTGCGCCATCGAGCATTCCGGTAATCAATGGGAAGAGCTTGACGGGACTATTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCTTCTCCACCTGCCCTCACTTCTCAGTTCTGGTTGTGGCTTATTACGTGGCACTTGGGCCTCTTCATAATGCTTACCTTCGGACAAATCGGGTTCAAGGGGAGGACCGAAGACTATTTTTCAAAGTGA

Protein sequence

MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERDWLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLITWHLGLFIMLTFGQIGFKGRTEDYFSK
Homology
[Close]
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_038895620.1 (photosystem I subunit O [Benincasa hispida])

HSP 1 Score: 281.2 bits (718), Expect = 5.2e-72
Identity = 138/147 (93.88%), Postives = 142/147 (96.60%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MATAFATSSSVVGLGT+SLSSPSSR+PRLVSGFV+ P+ ARNP AVARASGGRFTCFERD
Sbjct: 1   MATAFATSSSVVGLGTASLSSPSSRSPRLVSGFVKLPVTARNPFAVARASGGRFTCFERD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 147

[Close]
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_022142590.1 (photosystem I subunit O [Momordica charantia])

HSP 1 Score: 271.9 bits (694), Expect = 3.1e-69
Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLG-TSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFER 60
           MATAFATSS++VGLG +SSLSSPSSR+PRL S FV+SP AARNPL+VARASGGRFTCFER
Sbjct: 1   MATAFATSSTIVGLGRSSSLSSPSSRSPRLASVFVKSPAAARNPLSVARASGGRFTCFER 60

Query: 61  DWLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120
           DWLRRDLNVIGF LIGW+APSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL
Sbjct: 61  DWLRRDLNVIGFGLIGWLAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120

Query: 121 ITWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           +TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 VTWHLGLFITLTFGQIGFKGRTEDYFSK 148

[Close]
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_008463649.1 (PREDICTED: photosystem I subunit O [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 9.2e-69
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSR+PRLVSGF++SP+AARNPL V RAS GRFTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVINGKSLTGLFFESIG ELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 146

[Close]
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_004139499.1 (photosystem I subunit O [Cucumis sativus] >KGN64958.1 hypothetical protein Csa_022779 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 133/147 (90.48%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSR+PRLVSGF++ P+AARNPL+VA ASGG+FTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 146

[Close]
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_022973174.1 (photosystem I subunit O [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MA+AFATSSSVVGLG+SSLSSPSSR+PRLVSGF++ P+ ARNP  VAR+ GGRFTCF+RD
Sbjct: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYF K
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFQK 147

[Close]
BLAST of Clc01G11950 vs. ExPASy Swiss-Prot
Match: Q949Q5 (Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.9e-57
Identity = 106/145 (73.10%), Postives = 122/145 (84.14%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MA  FAT S+V+GLG SS++     T    S F++  L+A+NPL +A ASGGR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSIT-----TKPFSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNV+GF LIGW+APSSIP INGKSLTGLFF+SIG ELAHFP+PPALTSQFWLWL+
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLV 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYF 146
           TWHLGLF+ LTFGQIGFKGRTEDYF
Sbjct: 121 TWHLGLFLCLTFGQIGFKGRTEDYF 140

[Close]
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A6J1CLD0 (photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLG-TSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFER 60
           MATAFATSS++VGLG +SSLSSPSSR+PRL S FV+SP AARNPL+VARASGGRFTCFER
Sbjct: 1   MATAFATSSTIVGLGRSSSLSSPSSRSPRLASVFVKSPAAARNPLSVARASGGRFTCFER 60

Query: 61  DWLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120
           DWLRRDLNVIGF LIGW+APSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL
Sbjct: 61  DWLRRDLNVIGFGLIGWLAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWL 120

Query: 121 ITWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           +TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 VTWHLGLFITLTFGQIGFKGRTEDYFSK 148

[Close]
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A1S3CJR4 (photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSR+PRLVSGF++SP+AARNPL V RAS GRFTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVINGKSLTGLFFESIG ELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 146

[Close]
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A0A0LT61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.8e-69
Identity = 133/147 (90.48%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MATAFAT SSV GLGT+SLSSPSSR+PRLVSGF++ P+AARNPL+VA ASGG+FTCFERD
Sbjct: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYFSK
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFSK 146

[Close]
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A6J1IDS7 (photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.6e-69
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MA+AFATSSSVVGLG+SSLSSPSSR+PRLVSGF++ P+ ARNP  VAR+ GGRFTCF+RD
Sbjct: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSGFIKPPVVARNPFGVARSFGGRFTCFQRD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVI+GKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYF K
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFQK 147

[Close]
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A6J1EID2 (photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.7e-66
Identity = 127/147 (86.39%), Postives = 135/147 (91.84%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MA+AFATSSSVVGLG+SSLSSPSSR+PRLVS FV+ P+ ARNP  V R+ GGR TCF+RD
Sbjct: 1   MASAFATSSSVVGLGSSSLSSPSSRSPRLVSEFVKPPVVARNPFGVPRSFGGRITCFQRD 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNVIGF LIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFWLWLI
Sbjct: 61  WLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGTELAHFPSPPALTSQFWLWLI 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYFSK 148
           TWHLGLFI LTFGQIGFKGRTEDYF K
Sbjct: 121 TWHLGLFITLTFGQIGFKGRTEDYFQK 147

[Close]
BLAST of Clc01G11950 vs. TAIR 10
Match: AT1G08380.1 (photosystem I subunit O )

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-58
Identity = 106/145 (73.10%), Postives = 122/145 (84.14%), Query Frame = 0 

Query: 1   MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERD 60
           MA  FAT S+V+GLG SS++     T    S F++  L+A+NPL +A ASGGR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSIT-----TKPFSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLI 120
           WLRRDLNV+GF LIGW+APSSIP INGKSLTGLFF+SIG ELAHFP+PPALTSQFWLWL+
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLV 120

Query: 121 TWHLGLFIMLTFGQIGFKGRTEDYF 146
           TWHLGLF+ LTFGQIGFKGRTEDYF
Sbjct: 121 TWHLGLFLCLTFGQIGFKGRTEDYF 140

The following BLAST results are available for this feature:
BLAST of Clc01G11950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895620.15.2e-7293.88photosystem I subunit O [Benincasa hispida][more]
XP_022142590.13.1e-6990.54photosystem I subunit O [Momordica charantia][more]
XP_008463649.19.2e-6991.16PREDICTED: photosystem I subunit O [Cucumis melo][more]
XP_004139499.11.2e-6890.48photosystem I subunit O [Cucumis sativus] >KGN64958.1 hypothetical protein Csa_0... [more]
XP_022973174.11.6e-6888.44photosystem I subunit O [Cucurbita maxima][more]
BLAST of Clc01G11950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q949Q54.9e-5773.10Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1[more]
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CLD01.5e-6990.54photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1[more]
A0A1S3CJR44.4e-6991.16photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1[more]
A0A0A0LT615.8e-6990.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1[more]
A0A6J1IDS77.6e-6988.44photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1[more]
A0A6J1EID22.7e-6686.39photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1[more]
BLAST of Clc01G11950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08380.13.5e-5873.10photosystem I subunit O [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017498Photosystem I PsaOTIGRFAMTIGR03059TIGR03059coord: 67..145
e-value: 4.0E-38
score: 127.7
IPR017498Photosystem I PsaOPANTHERPTHR36311PHOTOSYSTEM I SUBUNIT Ocoord: 1..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR36311:SF2BNAC08G43200D PROTEINcoord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G11950.1Clc01G11950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
molecular_function GO:0003729 mRNA binding