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Clc01G11950 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCTGAACATCCCACCACCACACACCACAAATAATTGTTTTTGTTTGATGAAAAATACTTTGATACATAAGTAGAAAACGGCCCACTTTATCCAAAAAATTCCGAGGTGTCAAAGCTTGATTCATCAGAAATTGATTCACTATCCAAAGCAATCAAATCCACAATCCCCAAAATCTCATCCACACAAATTTCCCAACAAAATCCCAACCTCTTTCCCTCACTTCTACAAAACAACCGCACCACCCAAGCTCTGATCCGCACCAATCCTCTCAAAAAATGGCCACCGCCTTCGCTACCTCCTCCTCCGTCGTCGGTCTCGGAACCTCCTCCCTTTCTTCTCCTTCCTCCAGAACTCCCCGTCTCGTCTCCGGTAATCCACCGCTACCTCCAATCAACCCATCTCCAACTTTCTGCTGCACATCTGTAATTGATTTTGGGCATTTTTCTTGTCTTCCCAGGGTTCGTCAGGTCACCGCTCGCCGCCAGGAATCCTCTCGCTGTGGCACGTGCATCCGGCGGAAGATTCACCTGGTATGTGATTAGTGATTGTCCGATTTGGAGAATGATTGGTTGTTTGTTGTGATTTTGATTTTGTGTGGGGGAATGAAGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGCACTGATCGGGTGGATTGCGCCATCGAGCATTCCGGTAATCAATGGGAAGAGCTTGACGGGACTATTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCTTCTCCACCTGCCCTCACTTCTCAGTTCTGGTAAATTACATTTCCCGCTAACTTCTTTTTTTTTTAACAAAAAAGAATTAATTTAATTTTAGTATTTAGGCCATTTCATATTTATTTGATTTTTTATTTTTGAAATTTAAAAAACGAGTGAAATTAAAAGAACAAAGTAGTTTTTGGTTTTTACATTTTAATTAAGAATTCAAATATTTCTTTTAAATAGGAGGAATTATGGTAAAAGATTTGGGAAGAAATAAATATGAACTTCTAAAATAAAAAATTAAAATTGAAATGGTATCTAATGAGGTCTTATTTATTTGATTTGGATTTGAATCTCCAATTTCAAAATTCAAATGAAAATATGTCAATTATTATTTGCGCTATAATTGCTTGCATTCAAATTTTGCTTGGATTTGTACTCATTCTACTCTAAACTCTTTATAGATTATTATTTTTTCTAATTAAAAATGAGTATGATATAGTTAAAAAATGTAGGAGAAACATGAAGCACTTTAAAATTGTAGTAATAACATGATGCACGTTTGTAACTAAAACTATATAATCTCTTTATTAAATAATTAAATATCAATCAATAATAATGACGAACTTAAATATTTTGGACAAATATGAATTTATGTCTTCAAATTTTGGGAGTTGTATTAATTAAAATTTTGAACTCATAACTTTATCAATTTAAATCATGAACTTTCTTAAGTGTATCAATAAGTCTTTCTGTAGATTTCATTGGATTAATATTGTGGAAACTTATGATTTGAGCCAATTAAACCCTCAATTTTCATTACTAAATTAATTTAGATATGTCATTACAATTACGTTTGAAAATCATATATGCATTGATTCTTAAACGCGTGTACACTTCTTCAAATGTCGATTTTACAAAACGAACAATATTATAGTAAATGCATGAATGATTATCAAAGAAAATTTTGACCAAGAGTCTAAATTGGTCAATTTATGAAAGTTTAGGGGTTTAATTAATATAATTATGAGTTTCACACAAGATTTTTTAAAATGGAACGTAATGGAAGGTGTAAATTGATACACGTACAAAAGTTAAAAGTTTATATTAATACTTTCAACAATAAATTTTTTATAACTATTTGACTTTTGTTTTGTCATTCACCTTCACCAATGTTTTTGAAAATCAAACCAACATTTAAAAATAAAAAAAATGTAGTTTTTAAAAATTTATTTTTATTTTAGAATTTGACTAAGAATTAAAGTGTTTCTTTAAGAAATTTACCTACCCAAAATGGAATATATGAGAAATTAAACATAATTTCAAAAATAAAAAATAAAAAATTAAATTGTTACTTATTGAGGCTGTAGTTATTAAATTTTTATTTTATTATTATTATTTTTTGTTGAAATTTGGTTAAAAGACCTAATGTTTACCTTGGGAAGAGGAAAACCATGATTAAAGAATGGTGAGAAAACACAAAACCAAAAAGTTAAATAGTTATTCAAGTAAGCCTTAAATTTTTTAAAAATCTTTAGAAATTATTTAGAAGTAAGAATTATTTAAGGTTGAATTACCATGTTCATCCTTTACTGTTGAATTTGAGTTTTTCTATATTTAAATATTTAATTTCAGTTTTTTAGTCTCAATATATCTTAAATTTAGTCACCACCATTAGTTTATGGTTGGTTTTTTATAAAACTTTTGTTATCTATTATCATTTTTCTATAAATTTTAAAAACATATTTATATATTATATTTATTTGTATGAAAATTATTATTATTATATAACCAATTTTAATGAAAATTAACTCCGAAGAACAAAGTTCAAAGTTTATTAAAAATACAGACTAAAATTGAATCCAACCTGGAACAACGACCAAAATGATATTTTAATTACAATGATTGAGATAAAATTAAAATGTGTGTATTTCAGGTTGTGGCTTATTACGTGGCACTTGGGCCTCTTCATAATGCTTACCTTCGGACAAATCGGGTTCAAGGGGAGGACCGAAGACTATTTTTCAAAGTGAAAATGTAATAATTCTTAAAAAGGAGAGGGAATTCTAGTATTTATTATTCATGTTTATAAGTTATAAGTAGTGTTTGTGGCCATCATTTTCTTCATGTAAATCGCAACCTCCAAATCTTGGTATAACCTTGTGTTTATTAATGAAATGCCGCCTCGCTAATCCTACTCAACTCAGTTGTTTGAACTATTAAGTTCAAAGGAAAAGTGATAAGTAACACTCGAGGACATGTGATATGAACGGAGGAACCTTAAACATGCAATATGAACATAAACAATGAGCCATACATGCTGCTGTCCAAGTTTACACTAGGCAAAGAAGAAGAATTATATGAAGTCAAGTGGAATTTATGAAGAATGAAGCTTCATTTAATGAACAAAGACTTCAAGCTACTTCAAATGGGATGTTATTTACTCTTAGATGGTTACAAATGCATGAAATATGGTTAAAAAATATTAATCTCGGATTTATTGTATTTATTAAATGTATTTTTCAGTTTTGAGTCATTTTATGTGATTTTATGTTACAATTTCATCATGGCTTATAATGGTCATTAATTATGAGTGTTATAACTCTTTGAATGCCTCATAGAATGTTTAAGGTTAGATTTTGAGACCTATATAATCCCATGTAATTATTCAAAAATGAGAGATGGAAGAGATTTGAAAATGTAGTAAAAGAGCCTTTGAGCTAGAAACCTTGTGCTATGTTTCTTTTGCGATTCTATGGTGTTTAGGTTGCATGTCCAAAACCATGCAAACTTGACTTGATCGATCTTGTTTGTGGAGTGATTCGAAGATCAAGGATCAATGGAAGCATGAATTTTTGTTCGATCCGTGGTTTTGTTGATCTTCTAAGTAATGACCATTATAAGTAACACTCGAGGACTCTGATACCAAATAATAAGTAACACTCAATGACTTAGATTTAACAACCTTGACGACAAACAAGACTTTTAGATCTCAAACTCAAACACTTGAAATTAAGATGATCTCAGCCCCTAGGAATGACTAGATGACG ATCTGAACATCCCACCACCACACACCACAAATAATTGTTTTTGTTTGATGAAAAATACTTTGATACATAAGTAGAAAACGGCCCACTTTATCCAAAAAATTCCGAGGTGTCAAAGCTTGATTCATCAGAAATTGATTCACTATCCAAAGCAATCAAATCCACAATCCCCAAAATCTCATCCACACAAATTTCCCAACAAAATCCCAACCTCTTTCCCTCACTTCTACAAAACAACCGCACCACCCAAGCTCTGATCCGCACCAATCCTCTCAAAAAATGGCCACCGCCTTCGCTACCTCCTCCTCCGTCGTCGGTCTCGGAACCTCCTCCCTTTCTTCTCCTTCCTCCAGAACTCCCCGTCTCGTCTCCGGGTTCGTCAGGTCACCGCTCGCCGCCAGGAATCCTCTCGCTGTGGCACGTGCATCCGGCGGAAGATTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGCACTGATCGGGTGGATTGCGCCATCGAGCATTCCGGTAATCAATGGGAAGAGCTTGACGGGACTATTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCTTCTCCACCTGCCCTCACTTCTCAGTTCTGGTTGTGGCTTATTACGTGGCACTTGGGCCTCTTCATAATGCTTACCTTCGGACAAATCGGGTTCAAGGGGAGGACCGAAGACTATTTTTCAAAGTGAAAATGTAATAATTCTTAAAAAGGAGAGGGAATTCTAGTATTTATTATTCATGTTTATAAGTTATAAGTAGTGTTTGTGGCCATCATTTTCTTCATGTAAATCGCAACCTCCAAATCTTGGTATAACCTTGTGTTTATTAATGAAATGCCGCCTCGCTAATCCTACTCAACTCAGTTGTTTGAACTATTAAGTTCAAAGGAAAAGTGATAAGTAACACTCGAGGACATGTGATATGAACGGAGGAACCTTAAACATGCAATATGAACATAAACAATGAGCCATACATGCTGCTGTCCAAGTTTACACTAGGCAAAGAAGAAGAATTATATGAAGTCAAGTGGAATTTATGAAGAATGAAGCTTCATTTAATGAACAAAGACTTCAAGCTACTTCAAATGGGATGTTATTTACTCTTAGATGGTTACAAATGCATGAAATATGGTTAAAAAATATTAATCTCGGATTTATTGTATTTATTAAATGTATTTTTCAGTTTTGAGTCATTTTATGTGATTTTATGTTACAATTTCATCATGGCTTATAATGGTCATTAATTATGAGTGTTATAACTCTTTGAATGCCTCATAGAATGTTTAAGGTTAGATTTTGAGACCTATATAATCCCATGTAATTATTCAAAAATGAGAGATGGAAGAGATTTGAAAATGTAGTAAAAGAGCCTTTGAGCTAGAAACCTTGTGCTATGTTTCTTTTGCGATTCTATGGTGTTTAGGTTGCATGTCCAAAACCATGCAAACTTGACTTGATCGATCTTGTTTGTGGAGTGATTCGAAGATCAAGGATCAATGGAAGCATGAATTTTTGTTCGATCCGTGGTTTTGTTGATCTTCTAAGTAATGACCATTATAAGTAACACTCGAGGACTCTGATACCAAATAATAAGTAACACTCAATGACTTAGATTTAACAACCTTGACGACAAACAAGACTTTTAGATCTCAAACTCAAACACTTGAAATTAAGATGATCTCAGCCCCTAGGAATGACTAGATGACG ATGGCCACCGCCTTCGCTACCTCCTCCTCCGTCGTCGGTCTCGGAACCTCCTCCCTTTCTTCTCCTTCCTCCAGAACTCCCCGTCTCGTCTCCGGGTTCGTCAGGTCACCGCTCGCCGCCAGGAATCCTCTCGCTGTGGCACGTGCATCCGGCGGAAGATTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGCACTGATCGGGTGGATTGCGCCATCGAGCATTCCGGTAATCAATGGGAAGAGCTTGACGGGACTATTCTTTGAGAGCATTGGAGCAGAGCTTGCGCATTTTCCTTCTCCACCTGCCCTCACTTCTCAGTTCTGGTTGTGGCTTATTACGTGGCACTTGGGCCTCTTCATAATGCTTACCTTCGGACAAATCGGGTTCAAGGGGAGGACCGAAGACTATTTTTCAAAGTGA MATAFATSSSVVGLGTSSLSSPSSRTPRLVSGFVRSPLAARNPLAVARASGGRFTCFERDWLRRDLNVIGFALIGWIAPSSIPVINGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLITWHLGLFIMLTFGQIGFKGRTEDYFSK Homology
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_038895620.1 (photosystem I subunit O [Benincasa hispida]) HSP 1 Score: 281.2 bits (718), Expect = 5.2e-72 Identity = 138/147 (93.88%), Postives = 142/147 (96.60%), Query Frame = 0
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_022142590.1 (photosystem I subunit O [Momordica charantia]) HSP 1 Score: 271.9 bits (694), Expect = 3.1e-69 Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 0
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_008463649.1 (PREDICTED: photosystem I subunit O [Cucumis melo]) HSP 1 Score: 270.4 bits (690), Expect = 9.2e-69 Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_004139499.1 (photosystem I subunit O [Cucumis sativus] >KGN64958.1 hypothetical protein Csa_022779 [Cucumis sativus]) HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68 Identity = 133/147 (90.48%), Postives = 141/147 (95.92%), Query Frame = 0
BLAST of Clc01G11950 vs. NCBI nr
Match: XP_022973174.1 (photosystem I subunit O [Cucurbita maxima]) HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68 Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0
BLAST of Clc01G11950 vs. ExPASy Swiss-Prot
Match: Q949Q5 (Photosystem I subunit O OS=Arabidopsis thaliana OX=3702 GN=PSAO PE=1 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 4.9e-57 Identity = 106/145 (73.10%), Postives = 122/145 (84.14%), Query Frame = 0
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A6J1CLD0 (photosystem I subunit O OS=Momordica charantia OX=3673 GN=LOC111012668 PE=4 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69 Identity = 134/148 (90.54%), Postives = 142/148 (95.95%), Query Frame = 0
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A1S3CJR4 (photosystem I subunit O OS=Cucumis melo OX=3656 GN=LOC103501744 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69 Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A0A0LT61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168350 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 5.8e-69 Identity = 133/147 (90.48%), Postives = 141/147 (95.92%), Query Frame = 0
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A6J1IDS7 (photosystem I subunit O OS=Cucurbita maxima OX=3661 GN=LOC111471677 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 7.6e-69 Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 0
BLAST of Clc01G11950 vs. ExPASy TrEMBL
Match: A0A6J1EID2 (photosystem I subunit O OS=Cucurbita moschata OX=3662 GN=LOC111434359 PE=4 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 2.7e-66 Identity = 127/147 (86.39%), Postives = 135/147 (91.84%), Query Frame = 0
BLAST of Clc01G11950 vs. TAIR 10
Match: AT1G08380.1 (photosystem I subunit O ) HSP 1 Score: 221.9 bits (564), Expect = 3.5e-58 Identity = 106/145 (73.10%), Postives = 122/145 (84.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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