Clc01G11720 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G11720
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Poly(A)-specific ribonuclease
Location	ClcChr01: 18558087 .. 18558923 (-)
RNA-Seq Expression	Clc01G11720
Synteny	Clc01G11720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATCCACGATCTGAACACCGTCAATAAAACCATCAAAATCCGTGAAGTTTGGGCTTCCAATCTCGAATTCGAATTCCAGTTGATTCGCAATCTCATCGATCAATTCCCTTGCGTTTCAATGGACACGGAATTCCCCGGAATCGTTTTCGCCGATCCAACCAGACCCTTCAACTCTCAAAATCAGCCTTCCGATCACTACAGACTCCTCAAATCCAACGTCGACGCTCTCAACCTCATCCAGATCGGAATCACTCTCTCCGATTCCCACGGAAACTTGCCGGATCTCGGCACCGACGACACCCGATTCATCTGGGAGTTCAATTTCATGGATTTCGACGTGGCGCGTGACCTCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCAACCGGAATCGGGTAGAAGGGATCGACTCGTCCCGCTTCGCCGAGTTGATGATGTCATCAGGACTCGTCTGTAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCCTACGATTTTGGGTATTTGGTTAAGATTTTGACTCAGCGAAGCCTTCCAGATCGGGTAGACGAATTCCTCGGCGTTCTTAGGGTTTTCTTCGGCGATAACGTGTACGATATGAAGTACTTGATGCGGTTTTGCGAGAGTCTCTACGGCGGTTTGGACCGGATTGCTAAAATTCTGAACGTGAACCGGGCGGTTGGAAAGTGCCATCAGGCCGGGTCCGATAGCTTGCTGACGTGGCAAGCGTTTCAGAAGATGAGAGATACCTATTTTGTACAGAATGAGGTGCAGAAACATGCTGGGGTTCTCTATGGATTAGAGATCTTCTAA

mRNA sequence

ATGGTTATCCACGATCTGAACACCGTCAATAAAACCATCAAAATCCGTGAAGTTTGGGCTTCCAATCTCGAATTCGAATTCCAGTTGATTCGCAATCTCATCGATCAATTCCCTTGCGTTTCAATGGACACGGAATTCCCCGGAATCGTTTTCGCCGATCCAACCAGACCCTTCAACTCTCAAAATCAGCCTTCCGATCACTACAGACTCCTCAAATCCAACGTCGACGCTCTCAACCTCATCCAGATCGGAATCACTCTCTCCGATTCCCACGGAAACTTGCCGGATCTCGGCACCGACGACACCCGATTCATCTGGGAGTTCAATTTCATGGATTTCGACGTGGCGCGTGACCTCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCAACCGGAATCGGGTAGAAGGGATCGACTCGTCCCGCTTCGCCGAGTTGATGATGTCATCAGGACTCGTCTGTAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCCTACGATTTTGGGTATTTGGTTAAGATTTTGACTCAGCGAAGCCTTCCAGATCGGGTAGACGAATTCCTCGGCGTTCTTAGGGTTTTCTTCGGCGATAACGTGTACGATATGAAGTACTTGATGCGGTTTTGCGAGAGTCTCTACGGCGGTTTGGACCGGATTGCTAAAATTCTGAACGTGAACCGGGCGGTTGGAAAGTGCCATCAGGCCGGGTCCGATAGCTTGCTGACGTGGCAAGCGTTTCAGAAGATGAGAGATACCTATTTTGTACAGAATGAGGTGCAGAAACATGCTGGGGTTCTCTATGGATTAGAGATCTTCTAA

Coding sequence (CDS)

ATGGTTATCCACGATCTGAACACCGTCAATAAAACCATCAAAATCCGTGAAGTTTGGGCTTCCAATCTCGAATTCGAATTCCAGTTGATTCGCAATCTCATCGATCAATTCCCTTGCGTTTCAATGGACACGGAATTCCCCGGAATCGTTTTCGCCGATCCAACCAGACCCTTCAACTCTCAAAATCAGCCTTCCGATCACTACAGACTCCTCAAATCCAACGTCGACGCTCTCAACCTCATCCAGATCGGAATCACTCTCTCCGATTCCCACGGAAACTTGCCGGATCTCGGCACCGACGACACCCGATTCATCTGGGAGTTCAATTTCATGGATTTCGACGTGGCGCGTGACCTCCACGCTCCGGACTCCATCGAGCTTCTCCGCCGTCAGGGCATCGACTTCAACCGGAATCGGGTAGAAGGGATCGACTCGTCCCGCTTCGCCGAGTTGATGATGTCATCAGGACTCGTCTGTAACGACTCAGTGAGTTGGGTGACGTTTCACAGCGCCTACGATTTTGGGTATTTGGTTAAGATTTTGACTCAGCGAAGCCTTCCAGATCGGGTAGACGAATTCCTCGGCGTTCTTAGGGTTTTCTTCGGCGATAACGTGTACGATATGAAGTACTTGATGCGGTTTTGCGAGAGTCTCTACGGCGGTTTGGACCGGATTGCTAAAATTCTGAACGTGAACCGGGCGGTTGGAAAGTGCCATCAGGCCGGGTCCGATAGCTTGCTGACGTGGCAAGCGTTTCAGAAGATGAGAGATACCTATTTTGTACAGAATGAGGTGCAGAAACATGCTGGGGTTCTCTATGGATTAGAGATCTTCTAA

Protein sequence

MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF

Homology

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BLAST of Clc01G11720 vs. NCBI nr
Match: XP_038877224.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 544.3 bits (1401), Expect = 6.2e-151
Identity = 263/278 (94.60%), Postives = 270/278 (97.12%), Query Frame = 0


Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNS 60
           MVIHDLN  NK+IKIREVWASNLE EFQLIR+LIDQFPCVSMDTEFPGIVFADP RPFN 
Sbjct: 1   MVIHDLNINNKSIKIREVWASNLESEFQLIRDLIDQFPCVSMDTEFPGIVFADPARPFNF 60

Query: 61  QNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120
           Q+QPSDHYRLLKSNVDAL+LIQIGITLSDS GNLPDLGTDDTRFIWEFNFMDFDVARDLH
Sbjct: 61  QSQPSDHYRLLKSNVDALHLIQIGITLSDSDGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120

Query: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCN+SVSWVTFHSAYDFGYLVKI
Sbjct: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNNSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240
           LTQR LPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ
Sbjct: 181 LTQRRLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           AGSDSLLTW AFQKMRDTYFVQNE+QKHAGVLYGLE+F
Sbjct: 241 AGSDSLLTWHAFQKMRDTYFVQNEMQKHAGVLYGLEVF 278

[Close]

BLAST of Clc01G11720 vs. NCBI nr
Match: XP_022142408.1 (probable CCR4-associated factor 1 homolog 11 [Momordica charantia])

HSP 1 Score: 501.1 bits (1289), Expect = 6.0e-138
Identity = 236/277 (85.20%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNS 60
           MV+ DL   +K I+IREVWASNLE EF+LIR+LIDQFPCVSMDTEFPG+VF DP +P++ 
Sbjct: 1   MVVQDLKNNSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHR 60

Query: 61  QNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120
           QN+PSDHYRLLKSNVDALNLIQIGITLSDS GNLPDLGT  +RFIWEFNFMDFDVARD+H
Sbjct: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDVH 120

Query: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           APDSIELLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK+
Sbjct: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKV 180

Query: 181 LTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240
           LT+RSLP R++EFLGVLRVFFGD VYD+KY+MRFC+SLYGGLDRIAKILNV+RAVGKCHQ
Sbjct: 181 LTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQ 240

Query: 241 AGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEI 278
           AGSDSLLTW AFQKMRDTYFVQN ++KHAGVLYGLE+
Sbjct: 241 AGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV 277

[Close]

BLAST of Clc01G11720 vs. NCBI nr
Match: XP_022967098.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 495.7 bits (1275), Expect = 2.5e-136
Identity = 241/280 (86.07%), Postives = 260/280 (92.86%), Query Frame = 0


Query: 1   MVIHDLNTVN-KTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFN 60
           MV HDLN  + K+IKIREVWASNLE EFQLIR+LID FPCVSMDTEFPGIVF  PT PFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  SQNQ-PSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARD 120
           S N+  SDHY+LLKSNVDALNLIQIGITLSDS GNLPDLGTDD+RFIWEFNFMDFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 LHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
           ++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+ LP+RVDEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           HQAGSDSLLTW AFQKMRDT+FVQNEV+KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Clc01G11720 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 495.4 bits (1274), Expect = 3.3e-136
Identity = 240/280 (85.71%), Postives = 261/280 (93.21%), Query Frame = 0


Query: 1   MVIHDLNTVN-KTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFN 60
           MV HDLN  + K+IKIREVWASNLE EFQLIR+LID FPCVSMDTEFPGIVF  PT PFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  SQNQ-PSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARD 120
           + N+  SDHY+LLKSNVDALNLIQIGITLSDS GNLPDLGTDD+RFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 LHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
           ++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+SLP+R+DEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           HQAGSDSLLTW AFQKMRDT+FVQNEV+KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Clc01G11720 vs. NCBI nr
Match: XP_023541056.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 495.0 bits (1273), Expect = 4.3e-136
Identity = 240/281 (85.41%), Postives = 261/281 (92.88%), Query Frame = 0


Query: 1   MVIHDLNTVN-KTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFN 60
           MV HDLN  + K+IKIREVWASNLE EFQLIR+LID FPCVSMDTEFPGIVF  PT PFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  SQNQ--PSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVAR 120
           + N+   SDHY+LLKSNVDALNLIQIGITLSDS GNLPDLGTDD+RFIWEFNFMDFD+AR
Sbjct: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYL 180
           D++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 VKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGK 240
           +KILTQ+SLP+R+DEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           CHQAGSDSLLTW AFQKMRDT+FVQNEV+KHAGVLYGLE F
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281

[Close]

BLAST of Clc01G11720 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.3e-108
Identity = 189/272 (69.49%), Postives = 224/272 (82.35%), Query Frame = 0


Query: 9   VNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHY 68
           ++  I IR+VWA NLE EF LIR +++ +P +SMDTEFPG+++          N P+  Y
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGN-PNYLY 67

Query: 69  RLLKSNVDALNLIQIGITLSDSHGNLPDL-GTDDTRFIWEFNFMDFDVARDLHAPDSIEL 128
            LLKSNVDAL+LIQ+G+TLSD+ GNLPDL G  + R+IWEFNF DFDV RD HAPDSIEL
Sbjct: 68  NLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIEL 127

Query: 129 LRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLP 188
           LRR GIDF RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT+R LP
Sbjct: 128 LRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLP 187

Query: 189 DRVDEFLGVLRVFFGDNVYDMKYLMRFCES-LYGGLDRIAKILNVNRAVGKCHQAGSDSL 248
             + EFLG+LR FFGD VYD+K++MRFCE  LYGGLDR+A+ L VNRAVGKCHQAGSDSL
Sbjct: 188 VALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSL 247

Query: 249 LTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           LTWQAFQ+MRD YFV++  +KHAGVLYGLE+F
Sbjct: 248 LTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Clc01G11720 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.0e-107
Identity = 190/276 (68.84%), Postives = 222/276 (80.43%), Query Frame = 0


Query: 5   DLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQP 64
           DL     T+  REVWA NLE EF+LI  +ID +P +SMDTEFPG++F    R  N    P
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN----P 68

Query: 65  SDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTR-FIWEFNFMDFDVARDLHAPD 124
            D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFDVARD HAPD
Sbjct: 69  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 128

Query: 125 SIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQ 184
           SIELLRRQGIDF RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KILT+
Sbjct: 129 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 188

Query: 185 RSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCE-SLYGGLDRIAKILNVNRAVGKCHQAG 244
           R LP  + EF  V+RV FG+ VYD+K++M+FCE  L+GGLDR+A+ L VNRAVGKCHQAG
Sbjct: 189 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 248

Query: 245 SDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           SDSLLTW AFQ+MRD YFVQ+  +KHAGVLYGLE+F
Sbjct: 249 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Clc01G11720 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 295.4 bits (755), Expect = 6.6e-79
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 0


Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLL 71
           +I+IREVW  NLE E  LIR ++D FP V+MDTEFPGIV   P   F +  +   HY  L
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTE--YHYETL 68

Query: 72  KSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQ 131
           K+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FD+  D++A DSIELLR+ 
Sbjct: 69  KTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQS 128

Query: 132 GIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVD 191
           GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP+   
Sbjct: 129 GIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQT 188

Query: 192 EFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQA 251
            F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   
Sbjct: 189 GFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCT 248

Query: 252 FQKMRDTYFVQNEVQKHAGVLYGLEI 278
           F+K+++ +F+   ++K++GVLYGL +
Sbjct: 249 FRKLQENFFI-GSMEKYSGVLYGLGV 268

[Close]

BLAST of Clc01G11720 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.6e-77
Identity = 144/267 (53.93%), Postives = 198/267 (74.16%), Query Frame = 0


Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSD-HYRL 71
           +I+IREVW  NL+ E  LIR+++D FP V+MDTEFPGIV     RP  +    +D HY  
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 72  LKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRR 131
           LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FD+  D+ A DSIELL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 132 QGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRV 191
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LPD  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 192 DEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQ 251
            +F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 252 AFQKMRDTYFVQNEVQKHAGVLYGLEI 278
            F+K+++ +FV   + K++GVLYGL +
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGLGV 267

[Close]

BLAST of Clc01G11720 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-75
Identity = 144/266 (54.14%), Postives = 190/266 (71.43%), Query Frame = 0


Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLL 71
           +I IREVW  NL  EF LIR ++D+F  ++MDTEFPG+V   P   F   N    +YR L
Sbjct: 9   SIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVL-KPVATFKYNNDL--NYRTL 68

Query: 72  KSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQ 131
           K NVD L LIQ+G+T SD +GNLP  GTD    IW+FNF +F++  D++A +SIELLR+ 
Sbjct: 69  KENVDLLKLIQVGLTFSDENGNLPTCGTDKF-CIWQFNFREFNIGEDIYASESIELLRQC 128

Query: 132 GIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVD 191
           GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDFGYLVK+LT + LP +  
Sbjct: 129 GIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQA 188

Query: 192 EFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQA 251
           +F  +L V+F   VYD+K+LM FC  L+GGL+R+A+++ V R VG CHQAGSDSLLT  +
Sbjct: 189 DFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGS 248

Query: 252 FQKMRDTYFVQNEVQKHAGVLYGLEI 278
           F+K+++ YF     +K+ GVLYGL +
Sbjct: 249 FRKLKERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of Clc01G11720 vs. ExPASy TrEMBL
Match: A0A6J1CN71 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.9e-138
Identity = 236/277 (85.20%), Postives = 260/277 (93.86%), Query Frame = 0


Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNS 60
           MV+ DL   +K I+IREVWASNLE EF+LIR+LIDQFPCVSMDTEFPG+VF DP +P++ 
Sbjct: 1   MVVQDLKNNSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYHR 60

Query: 61  QNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120
           QN+PSDHYRLLKSNVDALNLIQIGITLSDS GNLPDLGT  +RFIWEFNFMDFDVARD+H
Sbjct: 61  QNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDVH 120

Query: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           APDSIELLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK+
Sbjct: 121 APDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKV 180

Query: 181 LTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240
           LT+RSLP R++EFLGVLRVFFGD VYD+KY+MRFC+SLYGGLDRIAKILNV+RAVGKCHQ
Sbjct: 181 LTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCHQ 240

Query: 241 AGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEI 278
           AGSDSLLTW AFQKMRDTYFVQN ++KHAGVLYGLE+
Sbjct: 241 AGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV 277

[Close]

BLAST of Clc01G11720 vs. ExPASy TrEMBL
Match: A0A6J1HU54 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 241/280 (86.07%), Postives = 260/280 (92.86%), Query Frame = 0


Query: 1   MVIHDLNTVN-KTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFN 60
           MV HDLN  + K+IKIREVWASNLE EFQLIR+LID FPCVSMDTEFPGIVF  PT PFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  SQNQ-PSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARD 120
           S N+  SDHY+LLKSNVDALNLIQIGITLSDS GNLPDLGTDD+RFIWEFNFMDFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 LHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
           ++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+ LP+RVDEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           HQAGSDSLLTW AFQKMRDT+FVQNEV+KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Clc01G11720 vs. ExPASy TrEMBL
Match: A0A6J1G223 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 240/280 (85.71%), Postives = 261/280 (93.21%), Query Frame = 0


Query: 1   MVIHDLNTVN-KTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFN 60
           MV HDLN  + K+IKIREVWASNLE EFQLIR+LID FPCVSMDTEFPGIVF  PT PFN
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  SQNQ-PSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARD 120
           + N+  SDHY+LLKSNVDALNLIQIGITLSDS GNLPDLGTDD+RFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 LHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLV 180
           ++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKC 240
           KILTQ+SLP+R+DEFLGVLRV FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           HQAGSDSLLTW AFQKMRDT+FVQNEV+KHAGVLYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]

BLAST of Clc01G11720 vs. ExPASy TrEMBL
Match: A0A0A0LYC8 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 2.0e-131
Identity = 229/278 (82.37%), Postives = 252/278 (90.65%), Query Frame = 0


Query: 1   MVIHDLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNS 60
           M+IHDLNT +K+I+IREVWASNLE EF+LIR+LIDQFPCVSMDTEFPG++F     P  S
Sbjct: 1   MLIHDLNTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIP-KS 60

Query: 61  QNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLH 120
            N PS HY+ LKSNVD L+LIQIGITLSDS GNLPDLGT DTRFIWEFNF DFDVARDLH
Sbjct: 61  PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLH 120

Query: 121 APDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180
           AP+SIELLRRQGIDF+RNR EGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI
Sbjct: 121 APNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQ 240
           LT + LP  +++FLGV+R+FFGDNVYDMKYLMRFC+SLYGGLDRIAK +NVNRAVGKCHQ
Sbjct: 181 LTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           AGSDSLLTW AFQKMRDT+FVQ E+ KHAGVLYGLE+F
Sbjct: 241 AGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]

BLAST of Clc01G11720 vs. ExPASy TrEMBL
Match: A0A5A7T1W0 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001920 PE=3 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 3.2e-129
Identity = 226/282 (80.14%), Postives = 252/282 (89.36%), Query Frame = 0


Query: 1   MVIHDLN----TVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTR 60
           M+IHDLN    +++K I+IREVWASNL+ EF+LI +LID+FPCVSMDTEFPG++F   T+
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  PFNSQNQPSDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVA 120
           P    N PS HY+ LKSNVD L+LIQIGITLSDS GNLPDLGT DTRFIWEFNF DFDVA
Sbjct: 61  P-KFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVA 120

Query: 121 RDLHAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGY 180
           RD HAPDSIELLRRQGIDF RNR EGIDSSRFAELMMSSGLVCN+SVSWVTFHSAYDFGY
Sbjct: 121 RDPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGY 180

Query: 181 LVKILTQRSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVG 240
           LVKILTQ+ LP  ++EFLGV+RVFFGDNVYDMKY+MRFC+SLYGGLDRIAK +NVNRAVG
Sbjct: 181 LVKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVG 240

Query: 241 KCHQAGSDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           KCHQAGSDSLLTW AFQKMRDT+FV+NE+ KHAGVLYGLE+F
Sbjct: 241 KCHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]

BLAST of Clc01G11720 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 393.3 bits (1009), Expect = 1.6e-109
Identity = 189/272 (69.49%), Postives = 224/272 (82.35%), Query Frame = 0


Query: 9   VNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHY 68
           ++  I IR+VWA NLE EF LIR +++ +P +SMDTEFPG+++          N P+  Y
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGN-PNYLY 67

Query: 69  RLLKSNVDALNLIQIGITLSDSHGNLPDL-GTDDTRFIWEFNFMDFDVARDLHAPDSIEL 128
            LLKSNVDAL+LIQ+G+TLSD+ GNLPDL G  + R+IWEFNF DFDV RD HAPDSIEL
Sbjct: 68  NLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIEL 127

Query: 129 LRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLP 188
           LRR GIDF RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDFGYLVKILT+R LP
Sbjct: 128 LRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLP 187

Query: 189 DRVDEFLGVLRVFFGDNVYDMKYLMRFCES-LYGGLDRIAKILNVNRAVGKCHQAGSDSL 248
             + EFLG+LR FFGD VYD+K++MRFCE  LYGGLDR+A+ L VNRAVGKCHQAGSDSL
Sbjct: 188 VALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSL 247

Query: 249 LTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           LTWQAFQ+MRD YFV++  +KHAGVLYGLE+F
Sbjct: 248 LTWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Clc01G11720 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-108
Identity = 190/276 (68.84%), Postives = 222/276 (80.43%), Query Frame = 0


Query: 5   DLNTVNKTIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQP 64
           DL     T+  REVWA NLE EF+LI  +ID +P +SMDTEFPG++F    R  N    P
Sbjct: 9   DLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTN----P 68

Query: 65  SDHYRLLKSNVDALNLIQIGITLSDSHGNLPDLGTDDTR-FIWEFNFMDFDVARDLHAPD 124
            D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFNF DFDVARD HAPD
Sbjct: 69  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 128

Query: 125 SIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQ 184
           SIELLRRQGIDF RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDFGYL+KILT+
Sbjct: 129 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 188

Query: 185 RSLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCE-SLYGGLDRIAKILNVNRAVGKCHQAG 244
           R LP  + EF  V+RV FG+ VYD+K++M+FCE  L+GGLDR+A+ L VNRAVGKCHQAG
Sbjct: 189 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 248

Query: 245 SDSLLTWQAFQKMRDTYFVQNEVQKHAGVLYGLEIF 279
           SDSLLTW AFQ+MRD YFVQ+  +KHAGVLYGLE+F
Sbjct: 249 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Clc01G11720 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 295.4 bits (755), Expect = 4.7e-80
Identity = 145/266 (54.51%), Postives = 198/266 (74.44%), Query Frame = 0


Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSDHYRLL 71
           +I+IREVW  NLE E  LIR ++D FP V+MDTEFPGIV   P   F +  +   HY  L
Sbjct: 9   SIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTE--YHYETL 68

Query: 72  KSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRRQ 131
           K+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF +FD+  D++A DSIELLR+ 
Sbjct: 69  KTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQS 128

Query: 132 GIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRVD 191
           GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LP+   
Sbjct: 129 GIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQT 188

Query: 192 EFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQA 251
            F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L+V R VG CHQAGSDSLLT   
Sbjct: 189 GFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCT 248

Query: 252 FQKMRDTYFVQNEVQKHAGVLYGLEI 278
           F+K+++ +F+   ++K++GVLYGL +
Sbjct: 249 FRKLQENFFI-GSMEKYSGVLYGLGV 268

[Close]

BLAST of Clc01G11720 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-78
Identity = 144/267 (53.93%), Postives = 198/267 (74.16%), Query Frame = 0


Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSD-HYRL 71
           +I+IREVW  NL+ E  LIR+++D FP V+MDTEFPGIV     RP  +    +D HY  
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 72  LKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRR 131
           LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FD+  D+ A DSIELL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 132 QGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRV 191
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LPD  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 192 DEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQ 251
            +F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 252 AFQKMRDTYFVQNEVQKHAGVLYGLEI 278
            F+K+++ +FV   + K++GVLYGL +
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGLGV 267

[Close]

BLAST of Clc01G11720 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-78
Identity = 144/267 (53.93%), Postives = 198/267 (74.16%), Query Frame = 0


Query: 12  TIKIREVWASNLEFEFQLIRNLIDQFPCVSMDTEFPGIVFADPTRPFNSQNQPSD-HYRL 71
           +I+IREVW  NL+ E  LIR+++D FP V+MDTEFPGIV     RP  +    +D HY  
Sbjct: 9   SIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV----VRPVGTFKSNADYHYET 68

Query: 72  LKSNVDALNLIQIGITLSDSHGNLPDLGTDDTRFIWEFNFMDFDVARDLHAPDSIELLRR 131
           LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF +FD+  D+ A DSIELL++
Sbjct: 69  LKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQ 128

Query: 132 QGIDFNRNRVEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTQRSLPDRV 191
            GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDFGYL+K+LT ++LPD  
Sbjct: 129 SGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 188

Query: 192 DEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCHQAGSDSLLTWQ 251
            +F  ++ V+F   VYD+K+LM+FC SL+GGL+++A++L V R VG CHQAGSDSLLT  
Sbjct: 189 TDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSC 248

Query: 252 AFQKMRDTYFVQNEVQKHAGVLYGLEI 278
            F+K+++ +FV   + K++GVLYGL +
Sbjct: 249 TFRKLKENFFV-GPLHKYSGVLYGLGV 267

The following BLAST results are available for this feature:

BLAST of Clc01G11720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877224.1	6.2e-151	94.60	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]
XP_022142408.1	6.0e-138	85.20	probable CCR4-associated factor 1 homolog 11 [Momordica charantia]	[more]
XP_022967098.1	2.5e-136	86.07	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]
XP_022945861.1	3.3e-136	85.71	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 ...	[more]
XP_023541056.1	4.3e-136	85.41	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc01G11720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS6	2.3e-108	69.49	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	2.0e-107	68.84	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	6.6e-79	54.51	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	3.6e-77	53.93	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	1.5e-75	54.14	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Clc01G11720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN71	2.9e-138	85.20	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=...	[more]
A0A6J1HU54	1.2e-136	86.07	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 S...	[more]
A0A6J1G223	1.6e-136	85.71	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3...	[more]
A0A0A0LYC8	2.0e-131	82.37	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV...	[more]
A0A5A7T1W0	3.2e-129	80.14	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Clc01G11720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22250.1	1.6e-109	69.49	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	1.4e-108	68.84	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	4.7e-80	54.51	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	2.6e-78	53.93	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	2.6e-78	53.93	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..277 e-value: 3.8E-96 score: 323.4
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 18..143 e-value: 1.2E-10 score: 41.2
None	No IPR available	PANTHER	PTHR10797:SF59	RIBONUCLEASE CAF1, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 7..278
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 7..278
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G11720.1	Clc01G11720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity