Clc01G11460 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G11460
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationClcChr01: 17757285 .. 17757875 (-)
RNA-Seq ExpressionClc01G11460
SyntenyClc01G11460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTGGCAAGGCTTGTCCCTTCAATTGTTACCTATAATCTTCTTATTGATGGATGGTGCAAAAGTGGTGATATTGATCAGGCCATCCTTCTTCTTTCCAAAATGAATGAAGAGAACAGGGACCCAACCATCATCACTTACACGACTTTGATTGATGGATGTTGCAATTCTGGAAGGCCTGACGATGCCGAAATGCTTTGGAATGAAATGCAGCAAAAAGGTTGCTCCCCAAACAGGATCGCTTATATGGCAATTGTACACGGCCTTTGCAAGTGTGGAAGGCCTGATGAAGCTTTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCTGACAGTTATGTCTCTGTTGCATTGATTGATGCTTTCATATCAAAACACCACTTTTTCATGGCTCTTCACATATTGAAGGAGACAATAGAGAAAGGAAACATTCCTGATCAGTCTGACAAGAACTATGTAATCGTAAGAGATGCCATCTTTAAATTGTCTGAAGACGAACAAACTGGCTTGGGAGTTAAATCTCTTATTGAAAAGGGCAGCATTCCGACGATTAGTGTTTCATGTTTGAGGGGCCAAAGTTGA

mRNA sequence

ATGATAGTGGCAAGGCTTGTCCCTTCAATTGTTACCTATAATCTTCTTATTGATGGATGGTGCAAAAGTGGTGATATTGATCAGGCCATCCTTCTTCTTTCCAAAATGAATGAAGAGAACAGGGACCCAACCATCATCACTTACACGACTTTGATTGATGGATGTTGCAATTCTGGAAGGCCTGACGATGCCGAAATGCTTTGGAATGAAATGCAGCAAAAAGGTTGCTCCCCAAACAGGATCGCTTATATGGCAATTGTACACGGCCTTTGCAAGTGTGGAAGGCCTGATGAAGCTTTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCTGACAGTTATGTCTCTGTTGCATTGATTGATGCTTTCATATCAAAACACCACTTTTTCATGGCTCTTCACATATTGAAGGAGACAATAGAGAAAGGAAACATTCCTGATCAGTCTGACAAGAACTATGTAATCGTAAGAGATGCCATCTTTAAATTGTCTGAAGACGAACAAACTGGCTTGGGAGTTAAATCTCTTATTGAAAAGGGCAGCATTCCGACGATTAGTGTTTCATGTTTGAGGGGCCAAAGTTGA

Coding sequence (CDS)

ATGATAGTGGCAAGGCTTGTCCCTTCAATTGTTACCTATAATCTTCTTATTGATGGATGGTGCAAAAGTGGTGATATTGATCAGGCCATCCTTCTTCTTTCCAAAATGAATGAAGAGAACAGGGACCCAACCATCATCACTTACACGACTTTGATTGATGGATGTTGCAATTCTGGAAGGCCTGACGATGCCGAAATGCTTTGGAATGAAATGCAGCAAAAAGGTTGCTCCCCAAACAGGATCGCTTATATGGCAATTGTACACGGCCTTTGCAAGTGTGGAAGGCCTGATGAAGCTTTAGTTTATTACCACAGGATGGAAGAAAAGGAAATGAAACCTGACAGTTATGTCTCTGTTGCATTGATTGATGCTTTCATATCAAAACACCACTTTTTCATGGCTCTTCACATATTGAAGGAGACAATAGAGAAAGGAAACATTCCTGATCAGTCTGACAAGAACTATGTAATCGTAAGAGATGCCATCTTTAAATTGTCTGAAGACGAACAAACTGGCTTGGGAGTTAAATCTCTTATTGAAAAGGGCAGCATTCCGACGATTAGTGTTTCATGTTTGAGGGGCCAAAGTTGA

Protein sequence

MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGRPDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPTISVSCLRGQS
Homology
BLAST of Clc01G11460 vs. NCBI nr
Match: XP_038894372.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Benincasa hispida])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 175/193 (90.67%), Postives = 183/193 (94.82%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M VA LVPS+VTYNLLIDGWCKSGDIDQAI  LSKMNE+NR+PTIITYTTLIDGCCNSGR
Sbjct: 688 MTVAGLVPSVVTYNLLIDGWCKSGDIDQAIFCLSKMNEQNREPTIITYTTLIDGCCNSGR 747

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDAE+ WNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 748 PDDAEIFWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 807

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDAFISKH+F MALHILK+TIEKGNIPD +DK YV +RDAI KLSEDEQTGLGVKSLIE
Sbjct: 808 LIDAFISKHNFSMALHILKDTIEKGNIPDPTDKKYVTIRDAILKLSEDEQTGLGVKSLIE 867

Query: 181 KGSIPTISVSCLR 194
           KGSIPTISVSCLR
Sbjct: 868 KGSIPTISVSCLR 880

BLAST of Clc01G11460 vs. NCBI nr
Match: KAA0056820.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99942.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 361.7 bits (927), Expect = 4.0e-96
Identity = 171/192 (89.06%), Postives = 184/192 (95.83%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVPS+V+YNLLIDGWCK+GDID+AIL LSKMNEENR+PTIITYTTLIDGCCNSGR
Sbjct: 621 MIVAGLVPSVVSYNLLIDGWCKNGDIDKAILCLSKMNEENREPTIITYTTLIDGCCNSGR 680

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDA++LWNEMQQKGCSPNRIAYMAIVHGLCKCG+PDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 681 PDDAKILWNEMQQKGCSPNRIAYMAIVHGLCKCGKPDEALVYYHRMEEKEMKPDSYVSVA 740

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDAFISKH+F MA H+LKETIEKGNIP+ +DKNYV +RDAIFKLSEDEQTGLGVKSLIE
Sbjct: 741 LIDAFISKHNFSMAFHVLKETIEKGNIPNPTDKNYVTIRDAIFKLSEDEQTGLGVKSLIE 800

Query: 181 KGSIPTISVSCL 193
           KG IPTI VSCL
Sbjct: 801 KGHIPTIGVSCL 812

BLAST of Clc01G11460 vs. NCBI nr
Match: XP_008452421.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis melo])

HSP 1 Score: 361.7 bits (927), Expect = 4.0e-96
Identity = 171/192 (89.06%), Postives = 184/192 (95.83%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVPS+V+YNLLIDGWCK+GDID+AIL LSKMNEENR+PTIITYTTLIDGCCNSGR
Sbjct: 687 MIVAGLVPSVVSYNLLIDGWCKNGDIDKAILCLSKMNEENREPTIITYTTLIDGCCNSGR 746

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDA++LWNEMQQKGCSPNRIAYMAIVHGLCKCG+PDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 747 PDDAKILWNEMQQKGCSPNRIAYMAIVHGLCKCGKPDEALVYYHRMEEKEMKPDSYVSVA 806

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDAFISKH+F MA H+LKETIEKGNIP+ +DKNYV +RDAIFKLSEDEQTGLGVKSLIE
Sbjct: 807 LIDAFISKHNFSMAFHVLKETIEKGNIPNPTDKNYVTIRDAIFKLSEDEQTGLGVKSLIE 866

Query: 181 KGSIPTISVSCL 193
           KG IPTI VSCL
Sbjct: 867 KGHIPTIGVSCL 878

BLAST of Clc01G11460 vs. NCBI nr
Match: KAG7032685.1 (putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.4 bits (864), Expect = 8.1e-89
Identity = 160/193 (82.90%), Postives = 178/193 (92.23%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVP++VTYNLLIDGWCKSGDIDQAI  LS+MN ENR+PTIITYTTLIDGCCNSGR
Sbjct: 528 MIVAGLVPTVVTYNLLIDGWCKSGDIDQAIRCLSRMNGENREPTIITYTTLIDGCCNSGR 587

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDAE+LWNEMQQKGC PNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 588 PDDAEILWNEMQQKGCFPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 647

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDA +SK +F MAL+IL++ +E G +PD +DKNYV +RDAIFKLSEDE+TG GV+SLIE
Sbjct: 648 LIDALVSKQNFPMALNILEKMVETGKVPDPADKNYVTIRDAIFKLSEDERTGSGVRSLIE 707

Query: 181 KGSIPTISVSCLR 194
           KGSIPTIS+S L+
Sbjct: 708 KGSIPTISISDLK 720

BLAST of Clc01G11460 vs. NCBI nr
Match: KAG6601988.1 (putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.7 bits (862), Expect = 1.4e-88
Identity = 160/193 (82.90%), Postives = 177/193 (91.71%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVP++VTYNLLIDGWCKSGDIDQAI  LS+MN ENR+PTIITYTTLIDGCCNSGR
Sbjct: 346 MIVAGLVPTVVTYNLLIDGWCKSGDIDQAIRCLSRMNGENREPTIITYTTLIDGCCNSGR 405

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDAE+LWNEMQQKGC PNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 406 PDDAEILWNEMQQKGCFPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 465

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDA +SK +F MAL+IL+  +E G +PD +DKNYV +RDAIFKLSEDE+TG GV+SLIE
Sbjct: 466 LIDALVSKQNFPMALNILETMVETGKVPDPADKNYVTIRDAIFKLSEDERTGSGVRSLIE 525

Query: 181 KGSIPTISVSCLR 194
           KGSIPTIS+S L+
Sbjct: 526 KGSIPTISISDLK 538

BLAST of Clc01G11460 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-46
Identity = 85/189 (44.97%), Postives = 123/189 (65.08%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M+   L P++ TYN +IDGWCK G+ID+ +  + +M E+ ++P +ITYT+LI G C SGR
Sbjct: 640 MVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGR 699

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           P +A   WNEM+ K C PNRI +MA++ GLCKCG   EALVY+  MEEKEM+PDS V ++
Sbjct: 700 PSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLS 759

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           L+ +F+S  +      I +E + KG  P   D+NY++  +   K  ED +T   +  LI+
Sbjct: 760 LVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLAVNVTSKFVEDLRTSCYLTCLIK 819

Query: 181 KGSIPTISV 190
            G IP ++V
Sbjct: 820 DGRIPILAV 828

BLAST of Clc01G11460 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 58/179 (32.40%), Postives = 96/179 (53.63%), Query Frame = 0

Query: 8   PSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGRPDDAEML 67
           PS+VTYN LI+G C +G ++ AI +L  M E+   P +++Y+T++ G C S   D+A  +
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 68  WNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDAFIS 127
             EM +KG  P+ I Y +++ G C+  R  EA   Y  M    + PD +   ALI+A+  
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532

Query: 128 KHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPT 187
           +     AL +  E +EKG +PD     Y ++ + + K S   +    +  L  + S+P+
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDV--VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589

BLAST of Clc01G11460 vs. ExPASy Swiss-Prot
Match: Q9LR67 (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 0

Query: 8   PSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGRPDDAEML 67
           P++  Y +LIDG+ KSG ++ AI LL +M +E   P ++TY+ +++G C +GR ++A   
Sbjct: 360 PNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 419

Query: 68  WNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDAFIS 127
           ++  +  G + N + Y +++ GL K GR DEA   +  M EK    DSY   ALIDAF  
Sbjct: 420 FHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479

Query: 128 KHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPTI 187
                 A+ + K   E+    DQ+   Y I+   +FK   +E+       +I+KG  PT 
Sbjct: 480 HRKVDEAIALFKRMEEEEGC-DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPT- 539

Query: 188 SVSCLRGQS 197
             +C R  S
Sbjct: 540 -AACFRALS 545

BLAST of Clc01G11460 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M+  +++P +VTYN LIDG C+SG+ D A  LLS MN+    P   TYT++ID  C S R
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
            ++A  L++ ++QKG +PN + Y A++ G CK G+ DEA +   +M  K   P+S    A
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVR 160
           LI    +      A  + ++ ++ G  P  S    +I R
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611

BLAST of Clc01G11460 vs. ExPASy Swiss-Prot
Match: Q9CAN0 (Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63130 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.2e-22
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M+V    P +VTY ++++G CK GDID A+ LL KM +   +P ++ Y T+ID  CN   
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKN 271

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
            +DA  L+ EM  KG  PN + Y +++  LC  GR  +A      M E+++ P+     A
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPD 150
           LIDAF+ +     A  +  E I++   PD
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

BLAST of Clc01G11460 vs. ExPASy TrEMBL
Match: A0A5A7UP07 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00750 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.9e-96
Identity = 171/192 (89.06%), Postives = 184/192 (95.83%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVPS+V+YNLLIDGWCK+GDID+AIL LSKMNEENR+PTIITYTTLIDGCCNSGR
Sbjct: 621 MIVAGLVPSVVSYNLLIDGWCKNGDIDKAILCLSKMNEENREPTIITYTTLIDGCCNSGR 680

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDA++LWNEMQQKGCSPNRIAYMAIVHGLCKCG+PDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 681 PDDAKILWNEMQQKGCSPNRIAYMAIVHGLCKCGKPDEALVYYHRMEEKEMKPDSYVSVA 740

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDAFISKH+F MA H+LKETIEKGNIP+ +DKNYV +RDAIFKLSEDEQTGLGVKSLIE
Sbjct: 741 LIDAFISKHNFSMAFHVLKETIEKGNIPNPTDKNYVTIRDAIFKLSEDEQTGLGVKSLIE 800

Query: 181 KGSIPTISVSCL 193
           KG IPTI VSCL
Sbjct: 801 KGHIPTIGVSCL 812

BLAST of Clc01G11460 vs. ExPASy TrEMBL
Match: A0A1S3BTR3 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493457 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.9e-96
Identity = 171/192 (89.06%), Postives = 184/192 (95.83%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVPS+V+YNLLIDGWCK+GDID+AIL LSKMNEENR+PTIITYTTLIDGCCNSGR
Sbjct: 687 MIVAGLVPSVVSYNLLIDGWCKNGDIDKAILCLSKMNEENREPTIITYTTLIDGCCNSGR 746

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDA++LWNEMQQKGCSPNRIAYMAIVHGLCKCG+PDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 747 PDDAKILWNEMQQKGCSPNRIAYMAIVHGLCKCGKPDEALVYYHRMEEKEMKPDSYVSVA 806

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           LIDAFISKH+F MA H+LKETIEKGNIP+ +DKNYV +RDAIFKLSEDEQTGLGVKSLIE
Sbjct: 807 LIDAFISKHNFSMAFHVLKETIEKGNIPNPTDKNYVTIRDAIFKLSEDEQTGLGVKSLIE 866

Query: 181 KGSIPTISVSCL 193
           KG IPTI VSCL
Sbjct: 867 KGHIPTIGVSCL 878

BLAST of Clc01G11460 vs. ExPASy TrEMBL
Match: A0A6J1JSS2 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487519 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 159/193 (82.38%), Postives = 178/193 (92.23%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVP++VTYNLLIDGWCKSGDIDQAI  LS+MN ENR+PTIITYTTLIDGCCNSGR
Sbjct: 619 MIVAGLVPTVVTYNLLIDGWCKSGDIDQAIRCLSRMNGENREPTIITYTTLIDGCCNSGR 678

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDAE+LWNEMQQKGC PNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 679 PDDAEILWNEMQQKGCFPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 738

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           +IDA +SK +F MAL+IL++ +E G +PD +DKNYV +RDAIFKLSEDE+TG GV+SLIE
Sbjct: 739 VIDALVSKQNFPMALNILEKMVETGKVPDPADKNYVTIRDAIFKLSEDERTGPGVRSLIE 798

Query: 181 KGSIPTISVSCLR 194
           KGSIPTIS+S L+
Sbjct: 799 KGSIPTISISDLK 811

BLAST of Clc01G11460 vs. ExPASy TrEMBL
Match: A0A6J1JQU8 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111487519 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 159/193 (82.38%), Postives = 178/193 (92.23%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVP++VTYNLLIDGWCKSGDIDQAI  LS+MN ENR+PTIITYTTLIDGCCNSGR
Sbjct: 551 MIVAGLVPTVVTYNLLIDGWCKSGDIDQAIRCLSRMNGENREPTIITYTTLIDGCCNSGR 610

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDAE+LWNEMQQKGC PNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 611 PDDAEILWNEMQQKGCFPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 670

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           +IDA +SK +F MAL+IL++ +E G +PD +DKNYV +RDAIFKLSEDE+TG GV+SLIE
Sbjct: 671 VIDALVSKQNFPMALNILEKMVETGKVPDPADKNYVTIRDAIFKLSEDERTGPGVRSLIE 730

Query: 181 KGSIPTISVSCLR 194
           KGSIPTIS+S L+
Sbjct: 731 KGSIPTISISDLK 743

BLAST of Clc01G11460 vs. ExPASy TrEMBL
Match: A0A6J1JU29 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487519 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 159/193 (82.38%), Postives = 178/193 (92.23%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           MIVA LVP++VTYNLLIDGWCKSGDIDQAI  LS+MN ENR+PTIITYTTLIDGCCNSGR
Sbjct: 654 MIVAGLVPTVVTYNLLIDGWCKSGDIDQAIRCLSRMNGENREPTIITYTTLIDGCCNSGR 713

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           PDDAE+LWNEMQQKGC PNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA
Sbjct: 714 PDDAEILWNEMQQKGCFPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 773

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           +IDA +SK +F MAL+IL++ +E G +PD +DKNYV +RDAIFKLSEDE+TG GV+SLIE
Sbjct: 774 VIDALVSKQNFPMALNILEKMVETGKVPDPADKNYVTIRDAIFKLSEDERTGPGVRSLIE 833

Query: 181 KGSIPTISVSCLR 194
           KGSIPTIS+S L+
Sbjct: 834 KGSIPTISISDLK 846

BLAST of Clc01G11460 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 188.0 bits (476), Expect = 7.4e-48
Identity = 85/189 (44.97%), Postives = 123/189 (65.08%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M+   L P++ TYN +IDGWCK G+ID+ +  + +M E+ ++P +ITYT+LI G C SGR
Sbjct: 640 MVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGR 699

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
           P +A   WNEM+ K C PNRI +MA++ GLCKCG   EALVY+  MEEKEM+PDS V ++
Sbjct: 700 PSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLS 759

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIE 180
           L+ +F+S  +      I +E + KG  P   D+NY++  +   K  ED +T   +  LI+
Sbjct: 760 LVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNYMLAVNVTSKFVEDLRTSCYLTCLIK 819

Query: 181 KGSIPTISV 190
            G IP ++V
Sbjct: 820 DGRIPILAV 828

BLAST of Clc01G11460 vs. TAIR 10
Match: AT1G03560.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 64/189 (33.86%), Postives = 101/189 (53.44%), Query Frame = 0

Query: 8   PSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGRPDDAEML 67
           P++  Y +LIDG+ KSG ++ AI LL +M +E   P ++TY+ +++G C +GR ++A   
Sbjct: 360 PNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 419

Query: 68  WNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDAFIS 127
           ++  +  G + N + Y +++ GL K GR DEA   +  M EK    DSY   ALIDAF  
Sbjct: 420 FHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479

Query: 128 KHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPTI 187
                 A+ + K   E+    DQ+   Y I+   +FK   +E+       +I+KG  PT 
Sbjct: 480 HRKVDEAIALFKRMEEEEGC-DQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPT- 539

Query: 188 SVSCLRGQS 197
             +C R  S
Sbjct: 540 -AACFRALS 545

BLAST of Clc01G11460 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-24
Identity = 58/179 (32.40%), Postives = 96/179 (53.63%), Query Frame = 0

Query: 8   PSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGRPDDAEML 67
           PS+VTYN LI+G C +G ++ AI +L  M E+   P +++Y+T++ G C S   D+A  +
Sbjct: 413 PSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472

Query: 68  WNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVALIDAFIS 127
             EM +KG  P+ I Y +++ G C+  R  EA   Y  M    + PD +   ALI+A+  
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532

Query: 128 KHHFFMALHILKETIEKGNIPDQSDKNYVIVRDAIFKLSEDEQTGLGVKSLIEKGSIPT 187
           +     AL +  E +EKG +PD     Y ++ + + K S   +    +  L  + S+P+
Sbjct: 533 EGDLEKALQLHNEMVEKGVLPDV--VTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589

BLAST of Clc01G11460 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-23
Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M+  +++P +VTYN LIDG C+SG+ D A  LLS MN+    P   TYT++ID  C S R
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
            ++A  L++ ++QKG +PN + Y A++ G CK G+ DEA +   +M  K   P+S    A
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPDQSDKNYVIVR 160
           LI    +      A  + ++ ++ G  P  S    +I R
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611

BLAST of Clc01G11460 vs. TAIR 10
Match: AT1G63130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-23
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   MIVARLVPSIVTYNLLIDGWCKSGDIDQAILLLSKMNEENRDPTIITYTTLIDGCCNSGR 60
           M+V    P +VTY ++++G CK GDID A+ LL KM +   +P ++ Y T+ID  CN   
Sbjct: 212 MVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKN 271

Query: 61  PDDAEMLWNEMQQKGCSPNRIAYMAIVHGLCKCGRPDEALVYYHRMEEKEMKPDSYVSVA 120
            +DA  L+ EM  KG  PN + Y +++  LC  GR  +A      M E+++ P+     A
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 121 LIDAFISKHHFFMALHILKETIEKGNIPD 150
           LIDAF+ +     A  +  E I++   PD
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038894372.11.6e-9790.67LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08... [more]
KAA0056820.14.0e-9689.06putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ... [more]
XP_008452421.14.0e-9689.06PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitoc... [more]
KAG7032685.18.1e-8982.90putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cu... [more]
KAG6601988.11.4e-8882.90putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cu... [more]
Match NameE-valueIdentityDescription
P0C8Q61.0e-4644.97Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
Q9FIX31.6e-2332.40Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX... [more]
Q9LR671.6e-2333.86Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidop... [more]
Q9LSL91.8e-2236.48Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX... [more]
Q9CAN05.2e-2236.24Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A5A7UP071.9e-9689.06Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A1S3BTR31.9e-9689.06putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
A0A6J1JSS21.1e-8882.38putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
A0A6J1JQU81.1e-8882.38putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
A0A6J1JU291.1e-8882.38putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial is... [more]
Match NameE-valueIdentityDescription
AT5G08310.17.4e-4844.97Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G03560.11.2e-2433.86Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT5G39710.11.2e-2432.40Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G65560.11.3e-2336.48Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63130.13.7e-2336.24Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..41
e-value: 1.8E-6
score: 25.8
coord: 46..79
e-value: 1.1E-13
score: 48.5
coord: 82..115
e-value: 1.6E-8
score: 32.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 78..125
e-value: 3.1E-8
score: 33.7
coord: 8..57
e-value: 1.7E-16
score: 60.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 12.068449
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.904029
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 14.216864
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 71..171
e-value: 2.3E-19
score: 72.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..70
e-value: 2.6E-21
score: 78.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 10..109
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 1..185
NoneNo IPR availablePANTHERPTHR47938:SF24PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL-RELATEDcoord: 1..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G11460.1Clc01G11460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding