Clc01G11200 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G11200
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationClcChr01: 16401395 .. 16403860 (-)
RNA-Seq ExpressionClc01G11200
SyntenyClc01G11200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTGTGACAAAAACACCCTTCAATTTGAAAGAGGATATTTTAATGTAAAGGCCTGCCAGCCGATAAGGCGGGGACGAGCCACTCAACCGGAAGCCCAGAAGAACTAACCGGAAAGGGCCACACAATCACCGGAATGGCATTCCAGCTCTGCCATTCTCCCTCCACCTTCTTCACCGACCACCATTCCCTCTCCAATTCTCTCACTTCTCAACGTAAAACAACTCTCTACAACTCCTCTCGCCTTTTCAAGCTCAATCCCATTCCTCGTCACTCAAAACCATTCCTCCAAATTACCAATGTCTCGCTACAGGAATACGCTCCTCAAGAAACCCACAATCCAACCCCCTCTGATGATGAAATCTCCAAATACCCAGATGGGAAATCCGGTTCCTCGTCCAAAAGCTCCGTTTGGGTGAATCCTAGAAGCCCCAGAGCTTCCAAGCTTCGGAAGCAATCGTACGAAGCCAGGTATACTTCTCTTACGAGAATATCGGAGTCCTTGGACTCTTGTAATCCATGTGAGGAAGATGTTGCTGATGTCTTGAAGGTGATAGGTAGCAACATTTTGGAACAGGATGCTGTTGTAGTGCTGAATAACATGTCGAATTCCCAAACTGCGTTGATTGCTCTTCGCTACTTCCAGGATGTGTTGAAATCAAGTAAACAGACTATATTTTATAATGTGACATTGAAGGTGTTTAGGAAGTGTAGAGATATGGAGGGTGCAGAGAAACTGTTCGAAGAAATGCTTGAGAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTGTGTTCGTTACCAAATAAGGCTGTTGAGTGGTTTGAGAAGATGCCAAGTTTTGACTGTAATCCTGATGATGTTACTTACTCCGCGATGATAGATGCCTATGGACGAGCTGGTAATGTTGACATGGCTTTCAGCTTGTATGACCGTGCAAGAACAGAAAACTGGCGTATCGATCCTGCAACATTCTCAACAATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGGTGCTTGAATGTGTATGAAGAAATGAAGGCTATAGGCATCAAGCCAAACTTGGTTATATATAACAGCTTGTTGGATGCTATGGGTAGGGCTAAAAGACCTTGGCAGATCAAGACCATTTACAAAGAGATGATTAAAAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCACTTTTACGTGCCTATGGAAGAGCCAGGTATGGTGAGGATGCTCTCCTTGTTTACAAGGAGATGAAGGAAAAGGGACTGCAGTTAAATGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCTGATGTTGGCTACGTTAATGAGGCTGTTGAAGTTTTTCAAGATATGAAAAGTTCTGGGACTTGCTCACCTGACAGTTGGACTTTTTCTTCCATGATCACCATATATTCCTGCAGTGGAAAAGTATCAGAGGCCGAAGAAATGTTGAATGAGATGGTGGAAGCCGGTTTCGACCCTAATATCTTTGTCTTGACATCACTAATCCAGTGCTACGGGAAAGCCAAACATGTCGATGATGTAGTGAGGACATTCAATCGATTGCTAGAGTTGGGATTAACTCCAGATGATCGATTCTGTGGCTGTCTTCTCAATGTAATTACCCAGACGCCAAAAGAGGAACTTAGTAAGCTGATTGATTGCGTTGAGAGAGCTAATCCAAAACTGGGTTTTGTGGTTGAACTCTTGCTAGGGGAGCAAGAAAAGGAAGGAGATTTCAGAACTGAAGCCTCAGAACTCTTTAGTGTTGTCAGTGCTGATGTGAGAAAAGCCTACTGCAATTGCTTAATTGATCTCTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAACTACTGGAGTTGGGGCTTACACTTCAGATATACAAAGATTTGCAATCCAGGTCTCCAACTCAGTGGTCTCTTTATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAATGACTTAACAAAGGTACTTGAATCCGGGGAGGAACTTCCGCCATTACTTGGAATAAATACTGGACATGGAAAACACAAATATTCAGATAAGGGTATGGCAAGCGTCTTTGAATCACATTTAAAGGAATTAAAGGCTCCATTCCATGAGGCTCCAGACAAGGTCGGGTGGTTTTTGACGACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAGCTTCACCTGAATTAGTTGCAGCATAGGTTGTTCATGAAAGGTCTCATAATTCTGTAGTGATATCTTTTATTTAAACCCTTTTTTTTCTCCTTTATTTTAATCGGCCATATATTTCTTGAAAGAGAACTTTATGTTAAAGAATGCAATGAAGAGTTCTGCTATCTTTGTTCTTCTAATGTATTATAATTCATTGGAATGTCACATTGTCATTCGAACACTCTAGTTTCTTGCTTACTGCTAA

mRNA sequence

ATTTTTGTGACAAAAACACCCTTCAATTTGAAAGAGGATATTTTAATGTAAAGGCCTGCCAGCCGATAAGGCGGGGACGAGCCACTCAACCGGAAGCCCAGAAGAACTAACCGGAAAGGGCCACACAATCACCGGAATGGCATTCCAGCTCTGCCATTCTCCCTCCACCTTCTTCACCGACCACCATTCCCTCTCCAATTCTCTCACTTCTCAACGTAAAACAACTCTCTACAACTCCTCTCGCCTTTTCAAGCTCAATCCCATTCCTCGTCACTCAAAACCATTCCTCCAAATTACCAATGTCTCGCTACAGGAATACGCTCCTCAAGAAACCCACAATCCAACCCCCTCTGATGATGAAATCTCCAAATACCCAGATGGGAAATCCGGTTCCTCGTCCAAAAGCTCCGTTTGGGTGAATCCTAGAAGCCCCAGAGCTTCCAAGCTTCGGAAGCAATCGTACGAAGCCAGGTATACTTCTCTTACGAGAATATCGGAGTCCTTGGACTCTTGTAATCCATGTGAGGAAGATGTTGCTGATGTCTTGAAGGTGATAGGTAGCAACATTTTGGAACAGGATGCTGTTGTAGTGCTGAATAACATGTCGAATTCCCAAACTGCGTTGATTGCTCTTCGCTACTTCCAGGATGTGTTGAAATCAAGTAAACAGACTATATTTTATAATGTGACATTGAAGGTGTTTAGGAAGTGTAGAGATATGGAGGGTGCAGAGAAACTGTTCGAAGAAATGCTTGAGAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTGTGTTCGTTACCAAATAAGGCTGTTGAGTGGTTTGAGAAGATGCCAAGTTTTGACTGTAATCCTGATGATGTTACTTACTCCGCGATGATAGATGCCTATGGACGAGCTGGTAATGTTGACATGGCTTTCAGCTTGTATGACCGTGCAAGAACAGAAAACTGGCGTATCGATCCTGCAACATTCTCAACAATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGGTGCTTGAATGTGTATGAAGAAATGAAGGCTATAGGCATCAAGCCAAACTTGGTTATATATAACAGCTTGTTGGATGCTATGGGTAGGGCTAAAAGACCTTGGCAGATCAAGACCATTTACAAAGAGATGATTAAAAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCACTTTTACGTGCCTATGGAAGAGCCAGGTATGGTGAGGATGCTCTCCTTGTTTACAAGGAGATGAAGGAAAAGGGACTGCAGTTAAATGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCTGATGTTGGCTACGTTAATGAGGCTGTTGAAGTTTTTCAAGATATGAAAAGTTCTGGGACTTGCTCACCTGACAGTTGGACTTTTTCTTCCATGATCACCATATATTCCTGCAGTGGAAAAGTATCAGAGGCCGAAGAAATGTTGAATGAGATGGTGGAAGCCGGTTTCGACCCTAATATCTTTGTCTTGACATCACTAATCCAGTGCTACGGGAAAGCCAAACATGTCGATGATGTAGTGAGGACATTCAATCGATTGCTAGAGTTGGGATTAACTCCAGATGATCGATTCTGTGGCTGTCTTCTCAATGTAATTACCCAGACGCCAAAAGAGGAACTTAGTAAGCTGATTGATTGCGTTGAGAGAGCTAATCCAAAACTGGGTTTTGTGGTTGAACTCTTGCTAGGGGAGCAAGAAAAGGAAGGAGATTTCAGAACTGAAGCCTCAGAACTCTTTAGTGTTGTCAGTGCTGATGTGAGAAAAGCCTACTGCAATTGCTTAATTGATCTCTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAACTACTGGAGTTGGGGCTTACACTTCAGATATACAAAGATTTGCAATCCAGGTCTCCAACTCAGTGGTCTCTTTATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAATGACTTAACAAAGGTACTTGAATCCGGGGAGGAACTTCCGCCATTACTTGGAATAAATACTGGACATGGAAAACACAAATATTCAGATAAGGGTATGGCAAGCGTCTTTGAATCACATTTAAAGGAATTAAAGGCTCCATTCCATGAGGCTCCAGACAAGGTCGGGTGGTTTTTGACGACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAGCTTCACCTGAATTAGTTGCAGCATAGGTTGTTCATGAAAGGTCTCATAATTCTGTAGTGATATCTTTTATTTAAACCCTTTTTTTTCTCCTTTATTTTAATCGGCCATATATTTCTTGAAAGAGAACTTTATGTTAAAGAATGCAATGAAGAGTTCTGCTATCTTTGTTCTTCTAATGTATTATAATTCATTGGAATGTCACATTGTCATTCGAACACTCTAGTTTCTTGCTTACTGCTAA

Coding sequence (CDS)

ATGGCATTCCAGCTCTGCCATTCTCCCTCCACCTTCTTCACCGACCACCATTCCCTCTCCAATTCTCTCACTTCTCAACGTAAAACAACTCTCTACAACTCCTCTCGCCTTTTCAAGCTCAATCCCATTCCTCGTCACTCAAAACCATTCCTCCAAATTACCAATGTCTCGCTACAGGAATACGCTCCTCAAGAAACCCACAATCCAACCCCCTCTGATGATGAAATCTCCAAATACCCAGATGGGAAATCCGGTTCCTCGTCCAAAAGCTCCGTTTGGGTGAATCCTAGAAGCCCCAGAGCTTCCAAGCTTCGGAAGCAATCGTACGAAGCCAGGTATACTTCTCTTACGAGAATATCGGAGTCCTTGGACTCTTGTAATCCATGTGAGGAAGATGTTGCTGATGTCTTGAAGGTGATAGGTAGCAACATTTTGGAACAGGATGCTGTTGTAGTGCTGAATAACATGTCGAATTCCCAAACTGCGTTGATTGCTCTTCGCTACTTCCAGGATGTGTTGAAATCAAGTAAACAGACTATATTTTATAATGTGACATTGAAGGTGTTTAGGAAGTGTAGAGATATGGAGGGTGCAGAGAAACTGTTCGAAGAAATGCTTGAGAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTGTGTTCGTTACCAAATAAGGCTGTTGAGTGGTTTGAGAAGATGCCAAGTTTTGACTGTAATCCTGATGATGTTACTTACTCCGCGATGATAGATGCCTATGGACGAGCTGGTAATGTTGACATGGCTTTCAGCTTGTATGACCGTGCAAGAACAGAAAACTGGCGTATCGATCCTGCAACATTCTCAACAATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGGTGCTTGAATGTGTATGAAGAAATGAAGGCTATAGGCATCAAGCCAAACTTGGTTATATATAACAGCTTGTTGGATGCTATGGGTAGGGCTAAAAGACCTTGGCAGATCAAGACCATTTACAAAGAGATGATTAAAAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCACTTTTACGTGCCTATGGAAGAGCCAGGTATGGTGAGGATGCTCTCCTTGTTTACAAGGAGATGAAGGAAAAGGGACTGCAGTTAAATGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCTGATGTTGGCTACGTTAATGAGGCTGTTGAAGTTTTTCAAGATATGAAAAGTTCTGGGACTTGCTCACCTGACAGTTGGACTTTTTCTTCCATGATCACCATATATTCCTGCAGTGGAAAAGTATCAGAGGCCGAAGAAATGTTGAATGAGATGGTGGAAGCCGGTTTCGACCCTAATATCTTTGTCTTGACATCACTAATCCAGTGCTACGGGAAAGCCAAACATGTCGATGATGTAGTGAGGACATTCAATCGATTGCTAGAGTTGGGATTAACTCCAGATGATCGATTCTGTGGCTGTCTTCTCAATGTAATTACCCAGACGCCAAAAGAGGAACTTAGTAAGCTGATTGATTGCGTTGAGAGAGCTAATCCAAAACTGGGTTTTGTGGTTGAACTCTTGCTAGGGGAGCAAGAAAAGGAAGGAGATTTCAGAACTGAAGCCTCAGAACTCTTTAGTGTTGTCAGTGCTGATGTGAGAAAAGCCTACTGCAATTGCTTAATTGATCTCTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAACTACTGGAGTTGGGGCTTACACTTCAGATATACAAAGATTTGCAATCCAGGTCTCCAACTCAGTGGTCTCTTTATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAATGACTTAACAAAGGTACTTGAATCCGGGGAGGAACTTCCGCCATTACTTGGAATAAATACTGGACATGGAAAACACAAATATTCAGATAAGGGTATGGCAAGCGTCTTTGAATCACATTTAAAGGAATTAAAGGCTCCATTCCATGAGGCTCCAGACAAGGTCGGGTGGTTTTTGACGACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAGCTTCACCTGAATTAGTTGCAGCATAG

Protein sequence

MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQEYAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRISESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGTCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVVRTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEKEGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA
Homology
[Close]
BLAST of Clc01G11200 vs. NCBI nr
Match: XP_038877791.1 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Benincasa hispida])

HSP 1 Score: 1366.7 bits (3536), Expect = 0.0e+00
Identity = 678/704 (96.31%), Postives = 694/704 (98.58%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTL NSSRLFKLNPIPRHSKPFLQITNVSLQE
Sbjct: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLCNSSRLFKLNPIPRHSKPFLQITNVSLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           YAPQETHNP+PS+DEISKYPDGKS SSSKSSVWVNPRSPRASKLRKQSYEARY SLTRIS
Sbjct: 61  YAPQETHNPSPSNDEISKYPDGKSSSSSKSSVWVNPRSPRASKLRKQSYEARYASLTRIS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDSCNPC+EDVADVLK IGSNIL+QDAVVVLNNMSNSQTAL+ALRYFQDVLKSSKQ I
Sbjct: 121 ESLDSCNPCQEDVADVLKEIGSNILQQDAVVVLNNMSNSQTALLALRYFQDVLKSSKQAI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
           FYNVTLKVFRKCRDMEGAEKLFEEML+RGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM
Sbjct: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLKRGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYV EAVEVFQDMKSSGT
Sbjct: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVYEAVEVFQDMKSSGT 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAK VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTF+RL+ELGLTPDDRFCGCLLNVITQTPKEELSKLIDCV RANPKLGFVV+LL+GEQ+K
Sbjct: 481 RTFSRLIELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVVRANPKLGFVVKLLMGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL+LGLTLQ+YKDLQSRS
Sbjct: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQLYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSLYLKGLSLGA LTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLYLKGLSLGAGLTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR+SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. NCBI nr
Match: XP_008464281.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis melo] >KAA0042345.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK15469.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 1339.3 bits (3465), Expect = 0.0e+00
Identity = 664/704 (94.32%), Postives = 685/704 (97.30%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLCHSP TFFT HHSLSNSLT QRKTTL NSS LFKLNPIPRHS PFLQITN+SLQE
Sbjct: 1   MAFQLCHSPPTFFTYHHSLSNSLTPQRKTTLSNSSPLFKLNPIPRHSTPFLQITNISLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           ++PQETHN  PSDDEISKY D KSGSSSKSSVWVNPRSPRASKLRKQSYEARY SL RIS
Sbjct: 61  HSPQETHNTIPSDDEISKYSDAKSGSSSKSSVWVNPRSPRASKLRKQSYEARYASLVRIS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDSCNPCE DVADVLKVIG+NILEQDAVVVLNNMSNSQTAL+ALRYFQD+LKSSKQTI
Sbjct: 121 ESLDSCNPCEVDVADVLKVIGNNILEQDAVVVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
           FYNVTLKVFRKCRDMEGAE+LFEEML RGVKPDNVTFSTIISCARLCSLP+KAVEWFEKM
Sbjct: 181 FYNVTLKVFRKCRDMEGAEELFEEMLNRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYS MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIK+GFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKSGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDAL+VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+FQDMK+SGT
Sbjct: 361 LRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKNSGT 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSCSGKVSEAEEMLN+MVEAGFDPNIFVLTSLIQCYGKAK VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTFN+L+ELGLTPDDRFCGCLLNVITQTPKEE+SKLIDCV RANPKLGFVVELLLGEQ+K
Sbjct: 481 RTFNQLIELGLTPDDRFCGCLLNVITQTPKEEISKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EG+FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLNLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR+SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. NCBI nr
Match: XP_004139516.1 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis sativus] >KGN64994.1 hypothetical protein Csa_022775 [Cucumis sativus])

HSP 1 Score: 1320.1 bits (3415), Expect = 0.0e+00
Identity = 654/704 (92.90%), Postives = 679/704 (96.45%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLC+SP TFFT+HH LSNSLT QRKTTL NSS LFKL+PIPRHSKPFLQITNVSLQE
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           +APQ+T N  PS DEISKYPD KSGSSS SSVWVNPRSPRASKLRKQSYEARY SL R+S
Sbjct: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDS NPCE DVADVLKVIG+NILE+DA++VLNNMSNSQTAL+ALRYFQD+LKSSKQTI
Sbjct: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
           FYNVTLKVFRKCRDMEGAEKLFEEM+ RGVKPDNVTFSTIISCARLCSLP+KAVEWFEKM
Sbjct: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYS MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYN LLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDAL+VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+FQDMKSSGT
Sbjct: 361 LRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGT 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSC GKVSEAEEMLN+MVEAGFDPNIFVLTSLIQCYGKAK VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTFN+L+ELGLTPDDRFCGCLLNVITQTPK EL KLIDCV RANPKLGFVVELLLGEQ+K
Sbjct: 481 RTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EG+FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL+LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSLYLKGLSLGAALTALHVWI DLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR+SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. NCBI nr
Match: XP_022142513.1 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Momordica charantia])

HSP 1 Score: 1282.7 bits (3318), Expect = 0.0e+00
Identity = 638/704 (90.62%), Postives = 663/704 (94.18%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLCHSPSTFF+DHH LSNSL SQ + TL  SS  FKLNP P HSK  L+ITNVSLQE
Sbjct: 1   MAFQLCHSPSTFFSDHHPLSNSLNSQHRITLRKSSHRFKLNPTPHHSKTCLRITNVSLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           YA QE  NP P+ DE SKYPDGKS SSSKSSVWVNPRSPRASKLR QSYEARY SLTRIS
Sbjct: 61  YAAQEAQNPIPTQDESSKYPDGKSNSSSKSSVWVNPRSPRASKLRNQSYEARYASLTRIS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDSCNPCEEDVADVLK +GSNILEQDAV VLNNMSNS TAL+AL+ FQ VLKSSK+ I
Sbjct: 121 ESLDSCNPCEEDVADVLKGMGSNILEQDAVAVLNNMSNSSTALLALQMFQKVLKSSKKAI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
            YNVTLKV RK RDMEGAEKLF+EML+RGVKPDNVTFST+ISCARLCSLPNKAVEWFEKM
Sbjct: 181 LYNVTLKVLRKSRDMEGAEKLFDEMLKRGVKPDNVTFSTVISCARLCSLPNKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFST+IKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTLIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+F+DMKSSG 
Sbjct: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFEDMKSSGA 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSCSGKVSEAEEMLNEM+EAGFDPNIFVLTSLIQCYGK K VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKGKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTF+RL+ELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERAN KLG+VV+LLLGEQ+K
Sbjct: 481 RTFDRLVELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANSKLGYVVKLLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EGD RTEASEL SVVSADVRKAYCNCLIDLCVNLDLL+KACELL+LGLTLQIY  LQS S
Sbjct: 541 EGDLRTEASELLSVVSADVRKAYCNCLIDLCVNLDLLEKACELLDLGLTLQIYTGLQSTS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSL+LKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLHLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. NCBI nr
Match: KAG6583722.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1273.5 bits (3294), Expect = 0.0e+00
Identity = 634/705 (89.93%), Postives = 664/705 (94.18%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTL-YNSSRLFKLNPIPRHSKPFLQITNVSLQ 60
           MAFQL H PSTFFTDH    NSLT   KTTL  +SSR+FKLNPIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSQQ 60

Query: 61  EYAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRI 120
           EYAPQET NP+PSDDEISK+PDGKSGSSSK+SVWVNP SPRASKLRKQSYEARY SL +I
Sbjct: 61  EYAPQETRNPSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120

Query: 121 SESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQT 180
           SESLDSCNPCE+DVADVLK I S ILEQDA+ VLNNMSNSQTAL+ LRYFQDVLKSSKQ 
Sbjct: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEK 240
           +FYNVTLKVFRKCRD EGAEKLF+EMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEK
Sbjct: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEK 240

Query: 241 MPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGN 300
           MPSFDCNPD++TYS MIDAYGRAGNVDMAFSLYDRARTENWRID +TFSTMIKIHGVAGN
Sbjct: 241 MPSFDCNPDNITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300

Query: 301 YDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYAS 360
           YDGCLNVYEEMKA+GIKPNL IYNSLL AMGRAKRPWQIKTIYKEM KNGFSPSWATYAS
Sbjct: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360

Query: 361 LLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSG 420
           LLRAY RARY ED +LVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEA+EVF+DMKSSG
Sbjct: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDV 480
           TCSPDSWTFSSMITIYSCSG VSEAEEMLNEM+EAGFDPNIFVLTSLIQCYGKAK VDDV
Sbjct: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 VRTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQE 540
           VRTF+RLLELGLTPDDRFCGCLLNVITQTPK ELSKLIDCVERANPKLGFVV+LLLGE++
Sbjct: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540

Query: 541 KEGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSR 600
            EGDFRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELL+LGL++QIY DLQSR
Sbjct: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMAS 660
           SPTQWSLYLKGLSLGAALTALHVWINDLTK L+SGEELPPLLGINTGHGKHKYSDKG++S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660

Query: 661 VFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           VFESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 701

[Close]
BLAST of Clc01G11200 vs. ExPASy Swiss-Prot
Match: Q8GWE0 (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P67 PE=1 SV=3)

HSP 1 Score: 936.8 bits (2420), Expect = 1.4e-271
Identity = 463/702 (65.95%), Postives = 565/702 (80.48%), Query Frame = 0 

Query: 5   LCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQEYAPQ 64
           LC SPS+   D   L N L+   K+T  +    +  N    HS+  LQ T+VS+QE  PQ
Sbjct: 6   LCSSPSSLLHDPLPLCNLLSVYPKSTPRSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQ 65

Query: 65  ETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRISESLD 124
              +     D     P     ++SKS VWVNP+SPRAS+LR++SY++RY+SL +++ESLD
Sbjct: 66  SEKSKLVDVDLPIPEP-----TASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLD 125

Query: 125 SCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTIFYNV 184
           +C P E DV DV+   G  + EQDAVV LNNM+N +TA + L    + +K S++ I YNV
Sbjct: 126 ACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNV 185

Query: 185 TLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKMPSFD 244
           T+KVFRK +D+E +EKLF+EMLERG+KPDN TF+TIISCAR   +P +AVEWFEKM SF 
Sbjct: 186 TMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFG 245

Query: 245 CNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCL 304
           C PD+VT +AMIDAYGRAGNVDMA SLYDRARTE WRID  TFST+I+I+GV+GNYDGCL
Sbjct: 246 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 305

Query: 305 NVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAY 364
           N+YEEMKA+G+KPNLVIYN L+D+MGRAKRPWQ K IYK++I NGF+P+W+TYA+L+RAY
Sbjct: 306 NIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAY 365

Query: 365 GRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGTCSPD 424
           GRARYG+DAL +Y+EMKEKGL L VILYNTLL+MCAD  YV+EA E+FQDMK+  TC PD
Sbjct: 366 GRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPD 425

Query: 425 SWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVVRTFN 484
           SWTFSS+IT+Y+CSG+VSEAE  L +M EAGF+P +FVLTS+IQCYGKAK VDDVVRTF+
Sbjct: 426 SWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFD 485

Query: 485 RLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQE-KEGD 544
           ++LELG+TPDDRFCGCLLNV+TQTP EE+ KLI CVE+A PKLG VV++L+ EQ  +EG 
Sbjct: 486 QVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGV 545

Query: 545 FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRSPTQ 604
           F+ EASEL   + +DV+KAY NCLIDLCVNL+ L++ACE+L+LGL   IY  LQS+S TQ
Sbjct: 546 FKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQ 605

Query: 605 WSLYLKGLSLGAALTALHVWINDLTK-VLESGEELPPLLGINTGHGKHKYSDKGMASVFE 664
           WSL+LK LSLGAALTALHVW+NDL++  LESGEE PPLLGINTGHGKHKYSDKG+A+VFE
Sbjct: 606 WSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFE 665

Query: 665 SHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           SHLKEL APFHEAPDKVGWFLTT VAAK+WLESR S   V+A
Sbjct: 666 SHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 702

[Close]
BLAST of Clc01G11200 vs. ExPASy Swiss-Prot
Match: Q10PZ4 (Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0215900 PE=3 SV=1)

HSP 1 Score: 720.7 bits (1859), Expect = 1.6e-206
Identity = 368/674 (54.60%), Postives = 477/674 (70.77%), Query Frame = 0 

Query: 36  RLFKLNPIPRHSKPFLQITNVSLQEYAPQETH-NPTPSDDEISKYPDGKSGSSSKSSVWV 95
           R   L+  P++  P      VS+Q+  P  +  NP+P          G+S ++S+  VWV
Sbjct: 13  RAISLSFQPKNPSPSPATARVSVQDPPPPPSDANPSP----------GRSSNTSR-YVWV 72

Query: 96  NPRSPRASKL-RKQSYEARYTSLTRISESLDSCNPCEEDVADVLK-VIGSNILEQDAVVV 155
           NP SPRA+ L R ++   R   L   + +L +C   E  VA  L+        EQDAV+V
Sbjct: 73  NPNSPRAAGLARARAGSGRRARLAAAAAALAACEAGEAPVAAALEAAFPEPPSEQDAVIV 132

Query: 156 LNNMSNSQTALI-ALRYFQDVLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEEMLERGVK 215
           LN  S    A++ AL +F    +  K+ I YNV LK  RK R    AE L+EEML  GV+
Sbjct: 133 LNTTSARPAAVVLALWWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQ 192

Query: 216 PDNVTFSTIISCARLCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSL 275
           PDN TFST+ISCAR C +P KAVEWFEKMP F C+PD +TYSA+IDAYGRAG+ + A  L
Sbjct: 193 PDNATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGDAETALRL 252

Query: 276 YDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGR 335
           YDRAR E W++DP   +T+I++H  +GN+DG LNV+EEMKA G+KPNLV+YN++LDAMGR
Sbjct: 253 YDRARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGR 312

Query: 336 AKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALLVYKEMKEKGLQLNVIL 395
           A RPW +KTI++E++     P+ ATY  LL AY RARYGEDA+ VY+ MK++ + ++V+L
Sbjct: 313 AMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVL 372

Query: 396 YNTLLAMCADVGYVNEAVEVFQDMKSS--GTCSPDSWTFSSMITIYSCSGKVSEAEEMLN 455
           YN LL+MCAD+GYV EA E+F+DMK+S      PDSW++SSM+T+YSC+G V+ AE +LN
Sbjct: 373 YNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAGAEGILN 432

Query: 456 EMVEAGFDPNIFVLTSLIQCYGKAKHVDDVVRTFNRLLELGLTPDDRFCGCLLNVITQTP 515
           EMVEAGF PNIF+LTSLI+CYGKA   DDVVR+F  L +LG+TPDDRFCGCLL V   TP
Sbjct: 433 EMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLLTVAAGTP 492

Query: 516 KEELSKLIDCVERANPKLGFVVELLLGEQEKEGDFRTEASELFSVVSADVRKAYCNCLID 575
            +EL K+I C++R++ +LG VV LL+         R  A EL       VR  YCNCL+D
Sbjct: 493 ADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMPYCNCLMD 552

Query: 576 LCVNLDLLDKACELLELGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTK 635
           L VNL  ++KAC LL++ L L IY ++Q+R+ TQWSL+L+GLS+GAALT LHVW++DL  
Sbjct: 553 LAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHVWMSDLYA 612

Query: 636 VLESGEELPPLLGINTGHGKHKYSDKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAA 695
            L++G+ELPPLLGI+TG GK+ YS KG+A+VFESHLKEL APFHEAPDK GWFLTT VAA
Sbjct: 613 ALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWFLTTSVAA 672

Query: 696 KSWLESRASPELVA 704
           + WLE++ S ELVA
Sbjct: 673 RHWLETKKSAELVA 675

[Close]
BLAST of Clc01G11200 vs. ExPASy Swiss-Prot
Match: B4F8Z1 (Pentatricopeptide repeat-containing protein ATP4, chloroplastic OS=Zea mays OX=4577 GN=ATP4 PE=2 SV=1)

HSP 1 Score: 719.9 bits (1857), Expect = 2.7e-206
Identity = 379/709 (53.46%), Postives = 488/709 (68.83%), Query Frame = 0 

Query: 5   LCHSPSTFFTD--HHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQEYA 64
           LC SPS+      H  +S S   +  +           +P+  H         VS+QE  
Sbjct: 6   LCRSPSSLLPSWPHRPISASFNPKNPS-----------SPVAAH---------VSVQETP 65

Query: 65  PQETHNPTPSDDEISKYPDGKSGSSSKSS--VWVNPRSPRASKL-RKQSYEARYTSLTRI 124
           PQ      PSD      P+G   SSS ++  +WVNP SPRA+ + R ++   R   L   
Sbjct: 66  PQPQDPSPPSDSN----PNGTRPSSSSNTRFLWVNPNSPRAADVARARAGSGRRARLASA 125

Query: 125 SESLDSCNPCEEDVADVLK-VIGSNILEQDAVVVLNN--MSNSQTALIALRYFQDVLKSS 184
           + +L +C   E  V   L+        EQDAV+VLN    + ++TA++ALR+F    K  
Sbjct: 126 AAALGACETTESAVEAALQAAFPEPPSEQDAVIVLNTAAATRAETAVLALRWFLGNAKVR 185

Query: 185 KQTIFYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEW 244
           K+ I YNV LK+ RK R     E L+ EML  GV+PDN TFST+ISCAR C L +KAVEW
Sbjct: 186 KKVILYNVVLKLLRKKRLWSETEALWAEMLRDGVQPDNATFSTVISCARACGLHSKAVEW 245

Query: 245 FEKMPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGV 304
           F+KMP F C+PD +TYSA+IDAYG AGN + A  LYDRAR E W++DP   ST+IK+H  
Sbjct: 246 FDKMPEFGCSPDMLTYSAVIDAYGHAGNSEAALRLYDRARAEKWQLDPVICSTVIKVHST 305

Query: 305 AGNYDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWAT 364
           +GN+DG LNV+EEMKAIG++PNLV+YN++LDAMGRA RPW +KTI++EM+     PS AT
Sbjct: 306 SGNFDGALNVFEEMKAIGVRPNLVVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRAT 365

Query: 365 YASLLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMK 424
           Y  LL AY RARYGEDA+ VY+ MK++ + ++V+LYN LL+MCAD+GYV+EA E+F+DMK
Sbjct: 366 YCCLLHAYTRARYGEDAMAVYRLMKDEAMGIDVMLYNMLLSMCADIGYVDEAEEIFRDMK 425

Query: 425 SS--GTCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAK 484
           +S      PDSW++SSM+T+YS +  V  AE +LNEMVEAGF PNIFVLTSLI+CYGK  
Sbjct: 426 ASMGAHSKPDSWSYSSMVTLYSSTANVLSAEGILNEMVEAGFKPNIFVLTSLIRCYGKVG 485

Query: 485 HVDDVVRTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELL 544
             DDVVR+F  L +LG+ PDDRFCGCLL+V   TP EEL K+I C+ER+N +LG VV+LL
Sbjct: 486 RTDDVVRSFGMLQDLGIIPDDRFCGCLLSVAANTPAEELGKVISCIERSNVQLGAVVKLL 545

Query: 545 LGEQEKEGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYK 604
           +     E  FR  A EL       V+  YCNCL+DLCVNL+ ++KAC LL+    L IY 
Sbjct: 546 VDRSSSE-SFREAARELLRSSRGVVKMPYCNCLMDLCVNLNQMEKACALLDAAQQLGIYA 605

Query: 605 DLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEE-LPPLLGINTGHGKHKYS 664
           ++Q+R+ TQWSL+L+GLS+GAALT LHVW+NDL   L++G E LPPLLGI+TG GK+ YS
Sbjct: 606 NIQTRTQTQWSLHLRGLSVGAALTTLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYS 665

Query: 665 DKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELV 703
           D+G+A++FE+HLKEL APFHEAPDK GWFLTT VAAK WLES+A+ ELV
Sbjct: 666 DRGLAAMFEAHLKELDAPFHEAPDKAGWFLTTNVAAKQWLESKAASELV 689

[Close]
BLAST of Clc01G11200 vs. ExPASy Swiss-Prot
Match: Q9LS25 (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.2e-131
Identity = 269/715 (37.62%), Postives = 408/715 (57.06%), Query Frame = 0 

Query: 2   AFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLN--------PIPRHSKPFLQI 61
           A  +C +P    T  HSL        K +L+  SR  KLN        P     +P    
Sbjct: 8   AIDVCFNPQNSDTKKHSLF------LKPSLFRQSRSRKLNISCSSLKQPKTLEEEPITTK 67

Query: 62  TNVSLQEYAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQ------ 121
           T    ++  P           +I   P          SVWVNP  P+ S L  Q      
Sbjct: 68  TPSLSEQLKPLSATTLRQEQTQILSKP---------KSVWVNPTRPKRSVLSLQRQKRSA 127

Query: 122 -SYEARYTSLTRISESLDSCNPCEE-DVADVLKVIGSNILEQDAVVVLNNMSNSQTALIA 181
            SY  +   L   +  L+S    E+ +   +L  I       +A++VLN++   Q     
Sbjct: 128 YSYNPQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTF 187

Query: 182 LRYFQDVLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCAR 241
             + +       +TIFYNVT+K  R  R  +  E++  EM++ GV+ DN+T+STII+CA+
Sbjct: 188 FNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAK 247

Query: 242 LCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPA 301
            C+L NKA+EWFE+M      PD+VTYSA++D Y ++G V+   SLY+RA    W+ D  
Sbjct: 248 RCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAI 307

Query: 302 TFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEM 361
            FS + K+ G AG+YDG   V +EMK++ +KPN+V+YN+LL+AMGRA +P   ++++ EM
Sbjct: 308 AFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEM 367

Query: 362 IKNGFSPSWATYASLLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYV 421
           ++ G +P+  T  +L++ YG+AR+  DAL +++EMK K   ++ ILYNTLL MCAD+G  
Sbjct: 368 LEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLE 427

Query: 422 NEAVEVFQDMKSSGTCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTS 481
            EA  +F DMK S  C PD++++++M+ IY   GK  +A E+  EM++AG   N+   T 
Sbjct: 428 EEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTC 487

Query: 482 LIQCYGKAKHVDDVVRTFNRLLELGLTPDDRFCGCLLNVITQ-TPKEELSKLIDCVERAN 541
           L+QC GKAK +DDVV  F+  ++ G+ PDDR CGCLL+V+      E+  K++ C+ERAN
Sbjct: 488 LVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERAN 547

Query: 542 PKLGFVVELLLGEQEKEGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL 601
            KL   V L++ E+ +    + E   + +    + R+ +CNCLID+C   +  ++A ELL
Sbjct: 548 KKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELL 607

Query: 602 ELGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGIN 661
            LG    +Y  L +++  +WSL ++ LS+GAA TAL  W+  L  +++  EELP L    
Sbjct: 608 YLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQ 667

Query: 662 TGHGKHKYSDKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASP 700
           TG G H++S +G+A+ F  HL++L APF ++ D+ G F+ TK    SWLES+  P
Sbjct: 668 TGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESKFPP 705

[Close]
BLAST of Clc01G11200 vs. ExPASy Swiss-Prot
Match: Q9SIC9 (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.2e-48
Identity = 149/591 (25.21%), Postives = 284/591 (48.05%), Query Frame = 0 

Query: 143 NILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQ--TIFYNVTLKVFRKCRDMEGAEK 202
           N++  +AV+        +   +A ++F ++ ++  Q   I +N  L V  +    E A  
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVA-KFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARN 361

Query: 203 LFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYG 262
           LF+EM  R ++ D  +++T++         + A E   +MP     P+ V+YS +ID + 
Sbjct: 362 LFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFA 421

Query: 263 RAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLV 322
           +AG  D A +L+   R     +D  +++T++ I+   G  +  L++  EM ++GIK ++V
Sbjct: 422 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 481

Query: 323 IYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALLVYKEM 382
            YN+LL   G+  +  ++K ++ EM +    P+  TY++L+  Y +    ++A+ +++E 
Sbjct: 482 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 541

Query: 383 KEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGTCSPDSWTFSSMITI------ 442
           K  GL+ +V+LY+ L+      G V  AV +  +M   G  SP+  T++S+I        
Sbjct: 542 KSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSAT 601

Query: 443 ------YSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLI---------QCYGKAKHVDDV 502
                 YS  G +  +   L+ + E   +  I +   L           C    + +  +
Sbjct: 602 MDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCI 661

Query: 503 VRTFNRLLELGLTPDDRFCGCLLNVITQTPK-EELSKLIDCVERANPKL-GFVVELLLGE 562
           +  F ++ +L + P+      +LN  ++    E+ S L++ +   + K+ G V  LL+G+
Sbjct: 662 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQ 721

Query: 563 QEKEGDFRTEASELFSVVS---ADVRKAYCNCLIDLCVNLDLLDKACELLEL-GLTLQIY 622
           +E   +   +A  LF  V+        A+ N L D+  +     +  EL+ L G + Q++
Sbjct: 722 RE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFG-QKRGAELVALEGRSRQVW 781

Query: 623 KDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHK-- 682
           +++ S S     L L  +S GAA   +H W+ ++  ++  G ELP +L I TG GKH   
Sbjct: 782 ENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKV 841

Query: 683 YSDKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELV 703
             D  +    E  L+ + APFH +   +G F ++     +WL   A+ +L+
Sbjct: 842 VGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLL 882

[Close]
BLAST of Clc01G11200 vs. ExPASy TrEMBL
Match: A0A5A7TLM5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00400 PE=3 SV=1)

HSP 1 Score: 1339.3 bits (3465), Expect = 0.0e+00
Identity = 664/704 (94.32%), Postives = 685/704 (97.30%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLCHSP TFFT HHSLSNSLT QRKTTL NSS LFKLNPIPRHS PFLQITN+SLQE
Sbjct: 1   MAFQLCHSPPTFFTYHHSLSNSLTPQRKTTLSNSSPLFKLNPIPRHSTPFLQITNISLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           ++PQETHN  PSDDEISKY D KSGSSSKSSVWVNPRSPRASKLRKQSYEARY SL RIS
Sbjct: 61  HSPQETHNTIPSDDEISKYSDAKSGSSSKSSVWVNPRSPRASKLRKQSYEARYASLVRIS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDSCNPCE DVADVLKVIG+NILEQDAVVVLNNMSNSQTAL+ALRYFQD+LKSSKQTI
Sbjct: 121 ESLDSCNPCEVDVADVLKVIGNNILEQDAVVVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
           FYNVTLKVFRKCRDMEGAE+LFEEML RGVKPDNVTFSTIISCARLCSLP+KAVEWFEKM
Sbjct: 181 FYNVTLKVFRKCRDMEGAEELFEEMLNRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYS MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIK+GFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKSGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDAL+VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+FQDMK+SGT
Sbjct: 361 LRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKNSGT 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSCSGKVSEAEEMLN+MVEAGFDPNIFVLTSLIQCYGKAK VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTFN+L+ELGLTPDDRFCGCLLNVITQTPKEE+SKLIDCV RANPKLGFVVELLLGEQ+K
Sbjct: 481 RTFNQLIELGLTPDDRFCGCLLNVITQTPKEEISKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EG+FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLNLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR+SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. ExPASy TrEMBL
Match: A0A1S3CL39 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502208 PE=3 SV=1)

HSP 1 Score: 1339.3 bits (3465), Expect = 0.0e+00
Identity = 664/704 (94.32%), Postives = 685/704 (97.30%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLCHSP TFFT HHSLSNSLT QRKTTL NSS LFKLNPIPRHS PFLQITN+SLQE
Sbjct: 1   MAFQLCHSPPTFFTYHHSLSNSLTPQRKTTLSNSSPLFKLNPIPRHSTPFLQITNISLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           ++PQETHN  PSDDEISKY D KSGSSSKSSVWVNPRSPRASKLRKQSYEARY SL RIS
Sbjct: 61  HSPQETHNTIPSDDEISKYSDAKSGSSSKSSVWVNPRSPRASKLRKQSYEARYASLVRIS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDSCNPCE DVADVLKVIG+NILEQDAVVVLNNMSNSQTAL+ALRYFQD+LKSSKQTI
Sbjct: 121 ESLDSCNPCEVDVADVLKVIGNNILEQDAVVVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
           FYNVTLKVFRKCRDMEGAE+LFEEML RGVKPDNVTFSTIISCARLCSLP+KAVEWFEKM
Sbjct: 181 FYNVTLKVFRKCRDMEGAEELFEEMLNRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYS MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIK+GFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKSGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDAL+VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+FQDMK+SGT
Sbjct: 361 LRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKNSGT 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSCSGKVSEAEEMLN+MVEAGFDPNIFVLTSLIQCYGKAK VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTFN+L+ELGLTPDDRFCGCLLNVITQTPKEE+SKLIDCV RANPKLGFVVELLLGEQ+K
Sbjct: 481 RTFNQLIELGLTPDDRFCGCLLNVITQTPKEEISKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EG+FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLNLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR+SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. ExPASy TrEMBL
Match: A0A0A0LVP1 (Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G173140 PE=3 SV=1)

HSP 1 Score: 1320.1 bits (3415), Expect = 0.0e+00
Identity = 654/704 (92.90%), Postives = 679/704 (96.45%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLC+SP TFFT+HH LSNSLT QRKTTL NSS LFKL+PIPRHSKPFLQITNVSLQE
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           +APQ+T N  PS DEISKYPD KSGSSS SSVWVNPRSPRASKLRKQSYEARY SL R+S
Sbjct: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDS NPCE DVADVLKVIG+NILE+DA++VLNNMSNSQTAL+ALRYFQD+LKSSKQTI
Sbjct: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
           FYNVTLKVFRKCRDMEGAEKLFEEM+ RGVKPDNVTFSTIISCARLCSLP+KAVEWFEKM
Sbjct: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYS MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYN LLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDAL+VYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+FQDMKSSGT
Sbjct: 361 LRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGT 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSC GKVSEAEEMLN+MVEAGFDPNIFVLTSLIQCYGKAK VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTFN+L+ELGLTPDDRFCGCLLNVITQTPK EL KLIDCV RANPKLGFVVELLLGEQ+K
Sbjct: 481 RTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EG+FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL+LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSLYLKGLSLGAALTALHVWI DLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR+SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. ExPASy TrEMBL
Match: A0A6J1CNE5 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012613 PE=3 SV=1)

HSP 1 Score: 1282.7 bits (3318), Expect = 0.0e+00
Identity = 638/704 (90.62%), Postives = 663/704 (94.18%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQE 60
           MAFQLCHSPSTFF+DHH LSNSL SQ + TL  SS  FKLNP P HSK  L+ITNVSLQE
Sbjct: 1   MAFQLCHSPSTFFSDHHPLSNSLNSQHRITLRKSSHRFKLNPTPHHSKTCLRITNVSLQE 60

Query: 61  YAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRIS 120
           YA QE  NP P+ DE SKYPDGKS SSSKSSVWVNPRSPRASKLR QSYEARY SLTRIS
Sbjct: 61  YAAQEAQNPIPTQDESSKYPDGKSNSSSKSSVWVNPRSPRASKLRNQSYEARYASLTRIS 120

Query: 121 ESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTI 180
           ESLDSCNPCEEDVADVLK +GSNILEQDAV VLNNMSNS TAL+AL+ FQ VLKSSK+ I
Sbjct: 121 ESLDSCNPCEEDVADVLKGMGSNILEQDAVAVLNNMSNSSTALLALQMFQKVLKSSKKAI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKM 240
            YNVTLKV RK RDMEGAEKLF+EML+RGVKPDNVTFST+ISCARLCSLPNKAVEWFEKM
Sbjct: 181 LYNVTLKVLRKSRDMEGAEKLFDEMLKRGVKPDNVTFSTVISCARLCSLPNKAVEWFEKM 240

Query: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNY 300
           PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFST+IKIHGVAGNY
Sbjct: 241 PSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTLIKIHGVAGNY 300

Query: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360
           DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL
Sbjct: 301 DGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASL 360

Query: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGT 420
           LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVE+F+DMKSSG 
Sbjct: 361 LRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFEDMKSSGA 420

Query: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVV 480
           CSPDSWTFSSMITIYSCSGKVSEAEEMLNEM+EAGFDPNIFVLTSLIQCYGK K VDDVV
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKGKRVDDVV 480

Query: 481 RTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEK 540
           RTF+RL+ELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERAN KLG+VV+LLLGEQ+K
Sbjct: 481 RTFDRLVELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANSKLGYVVKLLLGEQDK 540

Query: 541 EGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRS 600
           EGD RTEASEL SVVSADVRKAYCNCLIDLCVNLDLL+KACELL+LGLTLQIY  LQS S
Sbjct: 541 EGDLRTEASELLSVVSADVRKAYCNCLIDLCVNLDLLEKACELLDLGLTLQIYTGLQSTS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMASV 660
           PTQWSL+LKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKG+ASV
Sbjct: 601 PTQWSLHLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           FESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 704

[Close]
BLAST of Clc01G11200 vs. ExPASy TrEMBL
Match: A0A6J1EHV4 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111434309 PE=3 SV=1)

HSP 1 Score: 1268.8 bits (3282), Expect = 0.0e+00
Identity = 633/705 (89.79%), Postives = 661/705 (93.76%), Query Frame = 0 

Query: 1   MAFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNS-SRLFKLNPIPRHSKPFLQITNVSLQ 60
           MAFQL H PSTFFTDH    NSLT   KTTL  S SR+FKLNPIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSFSRVFKLNPIPYHSKPFLQITNVSQQ 60

Query: 61  EYAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRI 120
           EYAPQET NP+PSDDEISK+PDGKSGSSSK+SVWVNP SPRASKLRKQSYEARY SL +I
Sbjct: 61  EYAPQETRNPSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120

Query: 121 SESLDSCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQT 180
           SESLDSCNPCE DVADVLK I S ILEQDA+ VLNNMSNSQTAL+  RYFQDVLKSSKQ 
Sbjct: 121 SESLDSCNPCEVDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVHRYFQDVLKSSKQA 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEK 240
           +FYNVTLKVFRKCRD EGAEKLF+EMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEK
Sbjct: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEK 240

Query: 241 MPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGN 300
           MPSFDCNPD++TYS MIDAYGRAGNVDMAFSLYDRARTENWRID +TFSTMIKIHGVAGN
Sbjct: 241 MPSFDCNPDNITYSGMIDAYGRAGNVDMAFSLYDRARTENWRIDLSTFSTMIKIHGVAGN 300

Query: 301 YDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYAS 360
           YDGCLNVYEEMKA+GIKPNL IYNSLL AMGRAKRPWQIKTIYKEM KNGFSPSWATYAS
Sbjct: 301 YDGCLNVYEEMKAVGIKPNLAIYNSLLAAMGRAKRPWQIKTIYKEMTKNGFSPSWATYAS 360

Query: 361 LLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSG 420
           LLRAY RARY ED +LVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEA+EVF+DMKSSG
Sbjct: 361 LLRAYARARYAEDGMLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAIEVFKDMKSSG 420

Query: 421 TCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDV 480
           TCSPDSWTFSSMITIYSCSG VSEAEEMLNEM+EAGFDPNIFVLTSLIQCYGKAK VDDV
Sbjct: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 VRTFNRLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQE 540
           VRTF+RLLELGLTPDDRFCGCLLNVITQTPK ELSKLIDCVERANPKLGFVV+LLLGE++
Sbjct: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540

Query: 541 KEGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSR 600
            EGDFRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELL+LGL++QIY DLQSR
Sbjct: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGMAS 660
           SPTQWSLYLKGLSLGAALTALHVWINDLTK L+SGEELPPLLGINTGHGKHKYSDKG++S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660

Query: 661 VFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           VFESHLKEL APFHEAP+KVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 701

[Close]
BLAST of Clc01G11200 vs. TAIR 10
Match: AT4G16390.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 936.8 bits (2420), Expect = 1.0e-272
Identity = 463/702 (65.95%), Postives = 565/702 (80.48%), Query Frame = 0 

Query: 5   LCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLNPIPRHSKPFLQITNVSLQEYAPQ 64
           LC SPS+   D   L N L+   K+T  +    +  N    HS+  LQ T+VS+QE  PQ
Sbjct: 6   LCSSPSSLLHDPLPLCNLLSVYPKSTPRSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQ 65

Query: 65  ETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQSYEARYTSLTRISESLD 124
              +     D     P     ++SKS VWVNP+SPRAS+LR++SY++RY+SL +++ESLD
Sbjct: 66  SEKSKLVDVDLPIPEP-----TASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLD 125

Query: 125 SCNPCEEDVADVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTIFYNV 184
           +C P E DV DV+   G  + EQDAVV LNNM+N +TA + L    + +K S++ I YNV
Sbjct: 126 ACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNV 185

Query: 185 TLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKMPSFD 244
           T+KVFRK +D+E +EKLF+EMLERG+KPDN TF+TIISCAR   +P +AVEWFEKM SF 
Sbjct: 186 TMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFG 245

Query: 245 CNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCL 304
           C PD+VT +AMIDAYGRAGNVDMA SLYDRARTE WRID  TFST+I+I+GV+GNYDGCL
Sbjct: 246 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 305

Query: 305 NVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAY 364
           N+YEEMKA+G+KPNLVIYN L+D+MGRAKRPWQ K IYK++I NGF+P+W+TYA+L+RAY
Sbjct: 306 NIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAY 365

Query: 365 GRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGTCSPD 424
           GRARYG+DAL +Y+EMKEKGL L VILYNTLL+MCAD  YV+EA E+FQDMK+  TC PD
Sbjct: 366 GRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPD 425

Query: 425 SWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCYGKAKHVDDVVRTFN 484
           SWTFSS+IT+Y+CSG+VSEAE  L +M EAGF+P +FVLTS+IQCYGKAK VDDVVRTF+
Sbjct: 426 SWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFD 485

Query: 485 RLLELGLTPDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQE-KEGD 544
           ++LELG+TPDDRFCGCLLNV+TQTP EE+ KLI CVE+A PKLG VV++L+ EQ  +EG 
Sbjct: 486 QVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGV 545

Query: 545 FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKDLQSRSPTQ 604
           F+ EASEL   + +DV+KAY NCLIDLCVNL+ L++ACE+L+LGL   IY  LQS+S TQ
Sbjct: 546 FKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQ 605

Query: 605 WSLYLKGLSLGAALTALHVWINDLTK-VLESGEELPPLLGINTGHGKHKYSDKGMASVFE 664
           WSL+LK LSLGAALTALHVW+NDL++  LESGEE PPLLGINTGHGKHKYSDKG+A+VFE
Sbjct: 606 WSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFE 665

Query: 665 SHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELVAA 705
           SHLKEL APFHEAPDKVGWFLTT VAAK+WLESR S   V+A
Sbjct: 666 SHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 702

[Close]
BLAST of Clc01G11200 vs. TAIR 10
Match: AT5G46580.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 471.1 bits (1211), Expect = 1.6e-132
Identity = 269/715 (37.62%), Postives = 408/715 (57.06%), Query Frame = 0 

Query: 2   AFQLCHSPSTFFTDHHSLSNSLTSQRKTTLYNSSRLFKLN--------PIPRHSKPFLQI 61
           A  +C +P    T  HSL        K +L+  SR  KLN        P     +P    
Sbjct: 8   AIDVCFNPQNSDTKKHSLF------LKPSLFRQSRSRKLNISCSSLKQPKTLEEEPITTK 67

Query: 62  TNVSLQEYAPQETHNPTPSDDEISKYPDGKSGSSSKSSVWVNPRSPRASKLRKQ------ 121
           T    ++  P           +I   P          SVWVNP  P+ S L  Q      
Sbjct: 68  TPSLSEQLKPLSATTLRQEQTQILSKP---------KSVWVNPTRPKRSVLSLQRQKRSA 127

Query: 122 -SYEARYTSLTRISESLDSCNPCEE-DVADVLKVIGSNILEQDAVVVLNNMSNSQTALIA 181
            SY  +   L   +  L+S    E+ +   +L  I       +A++VLN++   Q     
Sbjct: 128 YSYNPQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTF 187

Query: 182 LRYFQDVLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEEMLERGVKPDNVTFSTIISCAR 241
             + +       +TIFYNVT+K  R  R  +  E++  EM++ GV+ DN+T+STII+CA+
Sbjct: 188 FNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAK 247

Query: 242 LCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYGRAGNVDMAFSLYDRARTENWRIDPA 301
            C+L NKA+EWFE+M      PD+VTYSA++D Y ++G V+   SLY+RA    W+ D  
Sbjct: 248 RCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAI 307

Query: 302 TFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEM 361
            FS + K+ G AG+YDG   V +EMK++ +KPN+V+YN+LL+AMGRA +P   ++++ EM
Sbjct: 308 AFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEM 367

Query: 362 IKNGFSPSWATYASLLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLAMCADVGYV 421
           ++ G +P+  T  +L++ YG+AR+  DAL +++EMK K   ++ ILYNTLL MCAD+G  
Sbjct: 368 LEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLE 427

Query: 422 NEAVEVFQDMKSSGTCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFDPNIFVLTS 481
            EA  +F DMK S  C PD++++++M+ IY   GK  +A E+  EM++AG   N+   T 
Sbjct: 428 EEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTC 487

Query: 482 LIQCYGKAKHVDDVVRTFNRLLELGLTPDDRFCGCLLNVITQ-TPKEELSKLIDCVERAN 541
           L+QC GKAK +DDVV  F+  ++ G+ PDDR CGCLL+V+      E+  K++ C+ERAN
Sbjct: 488 LVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERAN 547

Query: 542 PKLGFVVELLLGEQEKEGDFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL 601
            KL   V L++ E+ +    + E   + +    + R+ +CNCLID+C   +  ++A ELL
Sbjct: 548 KKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELL 607

Query: 602 ELGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGIN 661
            LG    +Y  L +++  +WSL ++ LS+GAA TAL  W+  L  +++  EELP L    
Sbjct: 608 YLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQ 667

Query: 662 TGHGKHKYSDKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASP 700
           TG G H++S +G+A+ F  HL++L APF ++ D+ G F+ TK    SWLES+  P
Sbjct: 668 TGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESKFPP 705

[Close]
BLAST of Clc01G11200 vs. TAIR 10
Match: AT2G31400.1 (genomes uncoupled 1 )

HSP 1 Score: 194.1 bits (492), Expect = 3.7e-49
Identity = 149/591 (25.21%), Postives = 284/591 (48.05%), Query Frame = 0 

Query: 143 NILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQ--TIFYNVTLKVFRKCRDMEGAEK 202
           N++  +AV+        +   +A ++F ++ ++  Q   I +N  L V  +    E A  
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVA-KFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARN 361

Query: 203 LFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYG 262
           LF+EM  R ++ D  +++T++         + A E   +MP     P+ V+YS +ID + 
Sbjct: 362 LFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFA 421

Query: 263 RAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLV 322
           +AG  D A +L+   R     +D  +++T++ I+   G  +  L++  EM ++GIK ++V
Sbjct: 422 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 481

Query: 323 IYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALLVYKEM 382
            YN+LL   G+  +  ++K ++ EM +    P+  TY++L+  Y +    ++A+ +++E 
Sbjct: 482 TYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREF 541

Query: 383 KEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGTCSPDSWTFSSMITI------ 442
           K  GL+ +V+LY+ L+      G V  AV +  +M   G  SP+  T++S+I        
Sbjct: 542 KSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSAT 601

Query: 443 ------YSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLI---------QCYGKAKHVDDV 502
                 YS  G +  +   L+ + E   +  I +   L           C    + +  +
Sbjct: 602 MDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCI 661

Query: 503 VRTFNRLLELGLTPDDRFCGCLLNVITQTPK-EELSKLIDCVERANPKL-GFVVELLLGE 562
           +  F ++ +L + P+      +LN  ++    E+ S L++ +   + K+ G V  LL+G+
Sbjct: 662 LEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQ 721

Query: 563 QEKEGDFRTEASELFSVVS---ADVRKAYCNCLIDLCVNLDLLDKACELLEL-GLTLQIY 622
           +E   +   +A  LF  V+        A+ N L D+  +     +  EL+ L G + Q++
Sbjct: 722 RE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFG-QKRGAELVALEGRSRQVW 781

Query: 623 KDLQSRSPTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHK-- 682
           +++ S S     L L  +S GAA   +H W+ ++  ++  G ELP +L I TG GKH   
Sbjct: 782 ENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKV 841

Query: 683 YSDKGMASVFESHLKELKAPFHEAPDKVGWFLTTKVAAKSWLESRASPELV 703
             D  +    E  L+ + APFH +   +G F ++     +WL   A+ +L+
Sbjct: 842 VGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESATLKLL 882

[Close]
BLAST of Clc01G11200 vs. TAIR 10
Match: AT5G02860.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-40
Identity = 100/350 (28.57%), Postives = 177/350 (50.57%), Query Frame = 0 

Query: 164 IALRYFQDVLKSSK-QTIFYNVTLKVFRKCRDMEG----AEKLFEEMLERGVKPDNVTFS 223
           +ALR F   +K    Q++  N  + +       EG    A  +F  + E G   D  +++
Sbjct: 153 LALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT 212

Query: 224 TIISCARLCSLPNKAVEWFEKMPSFDCNPDDVTYSAMIDAYGRAGNV-DMAFSLYDRART 283
           ++IS         +AV  F+KM    C P  +TY+ +++ +G+ G   +   SL ++ ++
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS 272

Query: 284 ENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNSLLDAMGRAKRPWQ 343
           +    D  T++T+I        +     V+EEMKA G   + V YN+LLD  G++ RP +
Sbjct: 273 DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

Query: 344 IKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALLVYKEMKEKGLQLNVILYNTLLA 403
              +  EM+ NGFSPS  TY SL+ AY R    ++A+ +  +M EKG + +V  Y TLL+
Sbjct: 333 AMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLS 392

Query: 404 MCADVGYVNEAVEVFQDMKSSGTCSPDSWTFSSMITIYSCSGKVSEAEEMLNEMVEAGFD 463
                G V  A+ +F++M+++G C P+  TF++ I +Y   GK +E  ++ +E+   G  
Sbjct: 393 GFERAGKVESAMSIFEEMRNAG-CKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLS 452

Query: 464 PNIFVLTSLIQCYGKAKHVDDVVRTFNRLLELGLTPDDRFCGCLLNVITQ 508
           P+I    +L+  +G+     +V   F  +   G  P+      L++  ++
Sbjct: 453 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSR 501

[Close]
BLAST of Clc01G11200 vs. TAIR 10
Match: AT1G18900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-38
Identity = 134/567 (23.63%), Postives = 244/567 (43.03%), Query Frame = 0 

Query: 135 DVLKVIGSNILEQDAVVVLNNMSNSQTALIALRYFQDVLKSSKQTIFYNVTLKVFRKCRD 194
           + L+ +G  I    A  VL  M++   AL    + +           Y   +    + + 
Sbjct: 320 EALQNLGLRIDAYQANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQ 379

Query: 195 MEGAEKLFEEMLERGVKPDNVTFSTIISCARLCSLPNKAVEWFEKMPSFDCNPDDVTYSA 254
                KL +EM+  G +P+ VT++ +I      +  N+A+  F +M    C PD VTY  
Sbjct: 380 FGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCT 439

Query: 255 MIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIG 314
           +ID + +AG +D+A  +Y R +      D  T+S +I   G AG+      ++ EM   G
Sbjct: 440 LIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499

Query: 315 IKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDAL 374
             PNLV YN ++D   +A+       +Y++M   GF P   TY+ ++   G   Y E+A 
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559

Query: 375 LVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEVFQDMKSSGTCSPDSWTFSSMITI 434
            V+ EM++K    +  +Y  L+ +    G V +A + +Q M  +G   P+  T +S+++ 
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG-LRPNVPTCNSLLST 619

Query: 435 YSCSGKVSEAEEMLNEMVEAGFDPNIFVLTSLIQCY--GKAKHVDDVVRTFNRLLELGLT 494
           +    K++EA E+L  M+  G  P++   T L+ C   G++K            L++G  
Sbjct: 620 FLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSK------------LDMG-- 679

Query: 495 PDDRFCGCLLNVITQTPKEELSKLIDCVERANPKLGFVVELLLGEQEKEGDFRTEASELF 554
               FCG L+                     +P   F++++     + E + R  A+   
Sbjct: 680 ----FCGQLM-----------------ASTGHPAHMFLLKMPAAGPDGE-NVRNHANNFL 739

Query: 555 SVVSADVR---KAYCNCLIDLCVNLDLLDKACELLELGLTLQIYKD-LQSRSPTQWSLYL 614
            ++ ++ R   +   + ++D        ++A  + E+     ++ D L+ +S + W + L
Sbjct: 740 DLMHSEDRESKRGLVDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINL 799

Query: 615 KGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHK--YSDKGMASVFESHLK 674
             +S G A+TAL   +    K + +    P  + I TG G+         +    E  L 
Sbjct: 800 HVMSEGTAVTALSRTLAWFRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLN 849

Query: 675 ELKAPFHEAPDKVGWFLTTKVAAKSWL 694
              +PF       G F+ +      WL
Sbjct: 860 IFGSPFFTESGNSGCFVGSGEPLNRWL 849

The following BLAST results are available for this feature:
BLAST of Clc01G11200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877791.10.0e+0096.31pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Benincasa ... [more]
XP_008464281.10.0e+0094.32PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic ... [more]
XP_004139516.10.0e+0092.90pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis sa... [more]
XP_022142513.10.0e+0090.63pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Momordica ... [more]
KAG6583722.10.0e+0089.93Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
BLAST of Clc01G11200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GWE01.4e-27165.95Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidop... [more]
Q10PZ41.6e-20654.60Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza... [more]
B4F8Z12.7e-20653.46Pentatricopeptide repeat-containing protein ATP4, chloroplastic OS=Zea mays OX=4... [more]
Q9LS252.2e-13137.62Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidop... [more]
Q9SIC95.2e-4825.21Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop... [more]
BLAST of Clc01G11200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TLM50.0e+0094.32Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CL390.0e+0094.32pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucumis ... [more]
A0A0A0LVP10.0e+0092.90Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G173140 PE=3 SV... [more]
A0A6J1CNE50.0e+0090.63pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Momordic... [more]
A0A6J1EHV40.0e+0089.79pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucurbit... [more]
BLAST of Clc01G11200 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16390.11.0e-27265.95pentatricopeptide (PPR) repeat-containing protein [more]
AT5G46580.11.6e-13237.62pentatricopeptide (PPR) repeat-containing protein [more]
AT2G31400.13.7e-4925.21genomes uncoupled 1 [more]
AT5G02860.11.1e-4028.57Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18900.11.3e-3823.63Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002625Smr domainSMARTSM00463SMR_2coord: 603..693
e-value: 8.2E-13
score: 58.6
IPR002625Smr domainPROSITEPS50828SMRcoord: 606..690
score: 16.128254
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 286..318
e-value: 4.2E-5
score: 21.4
coord: 463..494
e-value: 3.0E-5
score: 21.9
coord: 215..248
e-value: 0.0013
score: 16.8
coord: 391..424
e-value: 3.4E-6
score: 24.9
coord: 250..283
e-value: 1.6E-7
score: 29.1
coord: 182..213
e-value: 6.0E-6
score: 24.1
coord: 320..354
e-value: 2.1E-5
score: 22.4
coord: 427..459
e-value: 3.0E-7
score: 28.2
coord: 356..388
e-value: 1.6E-7
score: 29.0
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 244..274
e-value: 4.1E-8
score: 32.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 317..364
e-value: 6.1E-8
score: 32.8
coord: 179..223
e-value: 2.0E-11
score: 43.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 286..315
e-value: 1.5E-4
score: 21.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 11.99172
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..493
score: 10.128299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 178..212
score: 11.060009
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 10.972319
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 10.588674
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 283..317
score: 10.961357
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 213..247
score: 8.6266
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 10.742131
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 10.950397
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 372..511
e-value: 2.6E-13
score: 49.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 373..542
e-value: 2.4E-36
score: 127.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 115..254
e-value: 3.1E-23
score: 84.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 264..372
e-value: 4.1E-25
score: 90.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..97
NoneNo IPR availablePANTHERPTHR47447OS03G0856100 PROTEINcoord: 45..703
NoneNo IPR availablePANTHERPTHR47447:SF8PENTATRICOPEPTIDE REPEAT PROTEIN-RELATEDcoord: 45..703
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 293..492

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G11200.1Clc01G11200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0031425 chloroplast RNA processing
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding