Clc01G10550 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G10550
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr01: 14410369 .. 14411390 (-)
RNA-Seq ExpressionClc01G10550
SyntenyClc01G10550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTGAGGTAATTACCCTTTTTCAATCTTCAAAATGTTTTAATTTAATTTGTATAAGAAGCAATTCAGTTTTGCTTTCATGAGATCTAACTAAACCAACAGCAAAATGCATTTGATCCCTTTAATTTTGCTTAACTTTGGAATCTTAGCTTGTTTTGTTGACACATCTAATTGAATATCCAAAGGGTTCATGGAGTCAGAAATTTTTCATATCAAAACCATAACTTCAAAGTTTTACTTTTTTATTTTCCAATTTTAATGCACATAATTTTTTTTTTTTAATTAATCTTAATTCTTTTAATTTAGTTTTTTTTGGGATAATTAATCTATATTCTGTGTATGTAATCACATTGATGTTCAATGACTTCTTGTTCATGACACATGAAATCCATTTTTTTTTTTTAAATTTTTTGGTGGTGTTTTTTCAAAAAGGTTAAAAACGGGTAGAAACTTGGACATTTAACTTTGATATGGATACAAACTTGATGTGAGTTGAGGTTGGTTACGTGGATTTGTCAGGTTGAATCTGCTGCTTTGCCAGAGACGGTGGAGTCGGTAGAGGTGGTGAAGGTGGAGGAGAAATCTCCGGAGGAACAGCCAGGGATCGAGGCAGATGTGGAGGTTGAAGAGCGAAAAGCTGAAGCTGAAGAGTCGGATGAGGTAAGAGTAAAAACAGGAAGGAAGGGATAGAAGAGCTAAAGGTTTGAGTAGAAAATAATTTGTTCCTTCTTGATACATGTTATGGGTTTCTAATTCCCTGCAGGCAGAGCCATCCGCAGAAGCTTCGGTGGAGGAGGTGAAGCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGCAGTAGTGCCAACTGAATCGGTGGCGAAAGAAGAAGATCAGGTGCCTGAAGCCGAAGAACCAAAGGCTGAGGACCCTCCAGCACCCGAGGTCGAGGCCCAACCGGCGGCTGAGGAAGACAAACCATCTGAAACTCCAGTTGAGGTAGCAGAAGACAAGAGCCAAGAATAG

mRNA sequence

ATGGCCACTGAGGTTGAATCTGCTGCTTTGCCAGAGACGGTGGAGTCGGTAGAGGTGGTGAAGGTGGAGGAGAAATCTCCGGAGGAACAGCCAGGGATCGAGGCAGATGTGGAGGTTGAAGAGCGAAAAGCTGAAGCTGAAGAGTCGGATGAGGCAGAGCCATCCGCAGAAGCTTCGGTGGAGGAGGTGAAGCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGCAGTAGTGCCAACTGAATCGGTGGCGAAAGAAGAAGATCAGGTGCCTGAAGCCGAAGAACCAAAGGCTGAGGACCCTCCAGCACCCGAGGTCGAGGCCCAACCGGCGGCTGAGGAAGACAAACCATCTGAAACTCCAGTTGAGGTAGCAGAAGACAAGAGCCAAGAATAG

Coding sequence (CDS)

ATGGCCACTGAGGTTGAATCTGCTGCTTTGCCAGAGACGGTGGAGTCGGTAGAGGTGGTGAAGGTGGAGGAGAAATCTCCGGAGGAACAGCCAGGGATCGAGGCAGATGTGGAGGTTGAAGAGCGAAAAGCTGAAGCTGAAGAGTCGGATGAGGCAGAGCCATCCGCAGAAGCTTCGGTGGAGGAGGTGAAGCCTACAGAGGAACCCAAAGTCGAGGAGGAAGAAAAGAAAGAAGAAGCAGTAGTGCCAACTGAATCGGTGGCGAAAGAAGAAGATCAGGTGCCTGAAGCCGAAGAACCAAAGGCTGAGGACCCTCCAGCACCCGAGGTCGAGGCCCAACCGGCGGCTGAGGAAGACAAACCATCTGAAACTCCAGTTGAGGTAGCAGAAGACAAGAGCCAAGAATAG

Protein sequence

MATEVESAALPETVESVEVVKVEEKSPEEQPGIEADVEVEERKAEAEESDEAEPSAEASVEEVKPTEEPKVEEEEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQPAAEEDKPSETPVEVAEDKSQE
Homology
BLAST of Clc01G10550 vs. NCBI nr
Match: XP_038895685.1 (cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 102/145 (70.34%), Postives = 112/145 (77.24%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVE-----VEERKAEAEESDEAEP 60
           MATEVESAA LPETVES EVVK EEK+PEEQP  EA  E     VE+ K E +ESD+AE 
Sbjct: 1   MATEVESAATLPETVESPEVVKAEEKTPEEQPATEAKPEAESANVEKPKPEVQESDQAEQ 60

Query: 61  SAEASVEEVKPTEEPKVEEEEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPA--PEVEA 120
           +AEA  E   PTEEPKVEEEEKKEEAVVPTESVAKEE +VPEAEEPKAE+PPA   E EA
Sbjct: 61  TAEAPAEPENPTEEPKVEEEEKKEEAVVPTESVAKEE-EVPEAEEPKAEEPPAAEAEAEA 120

Query: 121 QPAAEEDK--PSETPVEVAEDKSQE 136
           +PAAEE+K    E P EVAE+K QE
Sbjct: 121 EPAAEEEKQVEEEKPAEVAEEKGQE 144

BLAST of Clc01G10550 vs. NCBI nr
Match: XP_008458953.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-16
Identity = 90/144 (62.50%), Postives = 99/144 (68.75%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVEV-----EERKAEAEESDEAEP 60
           MATEVE AA LPET   VEVVKVEEKSPEEQP IEAD EV     EE K EA E D+ + 
Sbjct: 1   MATEVEPAAPLPET---VEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTDE 60

Query: 61  SAEASVEEVKPTEEPKVEE-EEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQ 120
           S EA VE   P EE KVEE +EKKEE VV TE+V KEE    + E  KAE+ PA EVEA+
Sbjct: 61  STEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAE 120

Query: 121 PAAEEDK--PSETPVEVAEDKSQE 136
           P  EE+K    E PVEVAE+KSQE
Sbjct: 121 PPVEEEKVVEEEKPVEVAEEKSQE 141

BLAST of Clc01G10550 vs. NCBI nr
Match: KAA0054325.1 (putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK12361.1 putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 9.1e-15
Identity = 87/144 (60.42%), Postives = 98/144 (68.06%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVEV-----EERKAEAEESDEAEP 60
           ++ EVE AA LPET   VEVVKVEEKSPEEQP IEAD EV     EE K EA E D+ + 
Sbjct: 18  LSLEVEPAAPLPET---VEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTDE 77

Query: 61  SAEASVEEVKPTEEPKVEE-EEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQ 120
           S EA VE   P EE KVEE +EKKEE VV TE+V KEE    + E  KAE+ PA EVEA+
Sbjct: 78  STEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAE 137

Query: 121 PAAEEDK--PSETPVEVAEDKSQE 136
           P  EE+K    E PVEVAE+KSQE
Sbjct: 138 PPVEEEKVVEEEKPVEVAEEKSQE 158

BLAST of Clc01G10550 vs. NCBI nr
Match: XP_004139547.1 (uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_013003 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-11
Identity = 91/147 (61.90%), Postives = 98/147 (66.67%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVEV-----EERKAEAEESDEAEP 60
           MATEVESAA LPET   VEVVKVE+KS EEQP IEAD EV     EE K EA E D+ E 
Sbjct: 1   MATEVESAASLPET---VEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQVEE 60

Query: 61  SAEASVEEVKPTEEPKVEE-EEKKEEAVVPTESVAKEEDQVPEAEE-PKAEDPPAPEVEA 120
           S EA      P EE KVEE +EKKEE VV TES  KEE  VPEAEE  K E+ PA EVEA
Sbjct: 61  STEA------PVEESKVEEGQEKKEETVVATESEEKEE-AVPEAEESAKVEESPAAEVEA 120

Query: 121 Q--PAAEEDK--PSETPVEVAEDKSQE 136
           +  P  EE+K    E P EVAE+KSQE
Sbjct: 121 EAKPQVEEEKAIEEEKPTEVAEEKSQE 137

BLAST of Clc01G10550 vs. NCBI nr
Match: XP_022142401.1 (uncharacterized protein LOC111012542 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-08
Identity = 80/146 (54.79%), Postives = 93/146 (63.70%), Query Frame = 0

Query: 2   ATEVES--AALPETVESVEVVKVEEKSPEEQPGIEAD-----VEVEERKAEAEESDEAEP 61
           + EVES  A LPE VE+ E  KVEEKSPE QP  E        +VEE K EA E+D+A  
Sbjct: 3   SVEVESSVANLPENVEAPE-AKVEEKSPEVQPASEESPVAEPADVEEPKPEATEADQAVQ 62

Query: 62  SAEASVEEVKPTEEPKVEEEEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQP 121
           SA+A  E V+  EEP+VEEEEKKEEA    ESV KE   VP AEEPKAE+    E  A+P
Sbjct: 63  SAKAPEEAVEAAEEPRVEEEEKKEEA-AEAESVDKE--AVPAAEEPKAEESQTAEPAAEP 122

Query: 122 AA---EEDKP--SETPVEVAEDKSQE 136
           AA   E++KP   E   EVAE+KSQE
Sbjct: 123 AAAAVEDEKPVEKEKAAEVAEEKSQE 144

BLAST of Clc01G10550 vs. ExPASy TrEMBL
Match: A0A1S3C9M0 (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103498212 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 90/144 (62.50%), Postives = 99/144 (68.75%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVEV-----EERKAEAEESDEAEP 60
           MATEVE AA LPET   VEVVKVEEKSPEEQP IEAD EV     EE K EA E D+ + 
Sbjct: 1   MATEVEPAAPLPET---VEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTDE 60

Query: 61  SAEASVEEVKPTEEPKVEE-EEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQ 120
           S EA VE   P EE KVEE +EKKEE VV TE+V KEE    + E  KAE+ PA EVEA+
Sbjct: 61  STEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAE 120

Query: 121 PAAEEDK--PSETPVEVAEDKSQE 136
           P  EE+K    E PVEVAE+KSQE
Sbjct: 121 PPVEEEKVVEEEKPVEVAEEKSQE 141

BLAST of Clc01G10550 vs. ExPASy TrEMBL
Match: A0A5D3CKL4 (Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001390 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.4e-15
Identity = 87/144 (60.42%), Postives = 98/144 (68.06%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVEV-----EERKAEAEESDEAEP 60
           ++ EVE AA LPET   VEVVKVEEKSPEEQP IEAD EV     EE K EA E D+ + 
Sbjct: 18  LSLEVEPAAPLPET---VEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTDE 77

Query: 61  SAEASVEEVKPTEEPKVEE-EEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQ 120
           S EA VE   P EE KVEE +EKKEE VV TE+V KEE    + E  KAE+ PA EVEA+
Sbjct: 78  STEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAE 137

Query: 121 PAAEEDK--PSETPVEVAEDKSQE 136
           P  EE+K    E PVEVAE+KSQE
Sbjct: 138 PPVEEEKVVEEEKPVEVAEEKSQE 158

BLAST of Clc01G10550 vs. ExPASy TrEMBL
Match: A0A0A0LTG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 91/147 (61.90%), Postives = 98/147 (66.67%), Query Frame = 0

Query: 1   MATEVESAA-LPETVESVEVVKVEEKSPEEQPGIEADVEV-----EERKAEAEESDEAEP 60
           MATEVESAA LPET   VEVVKVE+KS EEQP IEAD EV     EE K EA E D+ E 
Sbjct: 1   MATEVESAASLPET---VEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQVEE 60

Query: 61  SAEASVEEVKPTEEPKVEE-EEKKEEAVVPTESVAKEEDQVPEAEE-PKAEDPPAPEVEA 120
           S EA      P EE KVEE +EKKEE VV TES  KEE  VPEAEE  K E+ PA EVEA
Sbjct: 61  STEA------PVEESKVEEGQEKKEETVVATESEEKEE-AVPEAEESAKVEESPAAEVEA 120

Query: 121 Q--PAAEEDK--PSETPVEVAEDKSQE 136
           +  P  EE+K    E P EVAE+KSQE
Sbjct: 121 EAKPQVEEEKAIEEEKPTEVAEEKSQE 137

BLAST of Clc01G10550 vs. ExPASy TrEMBL
Match: A0A6J1CM25 (uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012542 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 80/146 (54.79%), Postives = 93/146 (63.70%), Query Frame = 0

Query: 2   ATEVES--AALPETVESVEVVKVEEKSPEEQPGIEAD-----VEVEERKAEAEESDEAEP 61
           + EVES  A LPE VE+ E  KVEEKSPE QP  E        +VEE K EA E+D+A  
Sbjct: 3   SVEVESSVANLPENVEAPE-AKVEEKSPEVQPASEESPVAEPADVEEPKPEATEADQAVQ 62

Query: 62  SAEASVEEVKPTEEPKVEEEEKKEEAVVPTESVAKEEDQVPEAEEPKAEDPPAPEVEAQP 121
           SA+A  E V+  EEP+VEEEEKKEEA    ESV KE   VP AEEPKAE+    E  A+P
Sbjct: 63  SAKAPEEAVEAAEEPRVEEEEKKEEA-AEAESVDKE--AVPAAEEPKAEESQTAEPAAEP 122

Query: 122 AA---EEDKP--SETPVEVAEDKSQE 136
           AA   E++KP   E   EVAE+KSQE
Sbjct: 123 AAAAVEDEKPVEKEKAAEVAEEKSQE 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895685.12.6e-2570.34cytochrome c1-like [Benincasa hispida][more]
XP_008458953.13.7e-1662.50PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
KAA0054325.19.1e-1560.42putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK123... [more]
XP_004139547.13.6e-1161.90uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical ... [more]
XP_022142401.16.3e-0854.79uncharacterized protein LOC111012542 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3C9M01.8e-1662.50probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5D3CKL44.4e-1560.42Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0LTG91.7e-1161.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1[more]
A0A6J1CM253.1e-0854.79uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G10550.1Clc01G10550.1mRNA