Clc01G09830 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G09830
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ribonuclease H2 subunit C
Location	ClcChr01: 11352910 .. 11356794 (+)
RNA-Seq Expression	Clc01G09830
Synteny	Clc01G09830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAAACGAATTTCGAGCGGGAAAATCTTGGTCGACGATCCATTCTCATTTCTCAGTGCTCAAAAGAGCGGCAAGTGTAGAATCTGAAGTTTAAATGGTCCACTGAATTTCCTCGCCAGAAATCCGAAGCATCAACCTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAATTAATCAAATGAATACTGAAAACGAGAGGAAAGGGGAAGTAACCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGTGCAATTAAATTCGATGGTCCTTGCTCTGTTTCTCATTATTTTAAACCCAAATCCACTGGTAATGCCCTAATTTTCGCTGTTTCTTCTACTCCACTTTATATATTTGGGTAATTTGTTTGTAGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGATGGTTTGACTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACAGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGGTAAATTGAAAATACTTTCAGTTTCTAGTTCATTGAAAATTGGATCTGTTTGTTGATATTTCCCACTTGTATTGTTCAATACTTCAATCTCTTAATCACCCATCTGATGCTTACGTAAATAATTGGTTTCATTTTTCTATATTCTTCGGCATGATATTACTTTATAAACAATAAAAGGTGTTTTCTACTTTAATTTGTTATAAAATGGAAAGAATAAAAAACAAAGATGTCAATGTAAACTGAGTAAATCATAAACTTGACATGTCCATATTACTTGAGTTTTTATTTTTAGAAAAATATTTTGGGCTAGCTATGAACAATTGCTCTCCATGTAGATCAATGATTACATATTCACAGGGTTTATCTTGTCTTAAACAAGACTTTTTCAACAAATCAATAGAGCTCATCAAAACCAGATATAAAACACAGAAGGCTTGCCGACAGTTTAGTTATTGAAATGAAGTTTATTCCAATTCCAAGCATACTCAAAATTGACTTCCTTAACATCGTGTATGTTTTCATTTACCTGTTTTAGTTTAGGTAATTGATGTCTAAAATGAACGTAGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGTTCAAATAAGCAGAGATTGAACACTGATACTGGTAGTTCTTGTTCCAAGTCTTAGCTGCAAGTGTTTCTCATGTGGGTTGAATGGGGTTTCACTAAGACAATTGTTGTAGAGCTTTGGGATTTTTGTACGGATGGCTCCTTTCTCAGGGGCCTAAATGGAAAAAGCCAACTTTTTAGAAAGCTAAGTTTTTTGATCTTTTGCTTGCATCGTCAGATGGTGAAATTACCGTAACGATCCTATGAAGTATGGGTGGGCATCCTTAATGCTCACTTGCTACCCACTCTTGTTCTTGCTCTCGCTGACTTGACACTTGCATTTGCTTTTGCTCTCGCTCTTGTTACCCATTCTCAATTCTCGCTTTGTATTTTAGATTTGAACAAACACATCACATTTCATTTTTTCTTTATTGTTTTCTTATCTTTAACTCTCTATAAAGGAGCAAGGATCGAGAACGAGTACTGAGAGCAAATGTTAAGTCATTGAGAGCGATAGTGAGAATGAATATCTAGATGAGTGGGAATGAGTAGCGAGAATCAAGTGTCGAGGGCCACCACATGTGCTTCAAAGGGTTGTTACAGTAACTTCACTGTGTGATGACAGGTCTTTTTCTTTTAGGGCCTTCAAACTTAGTTTTCTAAAAAGAGGGTTTTTTCTTTTTCTTTCGGGTCCTTAATGGGCCAGCTGCACGAAGTTCCCAAGAGCTTTCCTATAATTCTTACTATTTTGCTGTTTTCTGATTGATGTTCTTGTTTCACTTGTAATATGCCTGGATATATTTTGAAGAAATTTCAACATGCATTCTGTTTACATTTTGTGAAGAAAAAGATGTTAGGATGGTACACTGGTCGAAGTTAAACTGGATATTTAAACTGGAACAAGTTTATGAATCTAATCGCAGGAATTTTCATTGGTTTTCTTATTCTAGGGTGGAATTTAGCTGTCAACTTTGTTCTCTTTTCACGATCAACTGCGTCTGAGATCTATTTAATTTTTCTGGACCAGTCAAGTTTTACAGAATTGCACAAAAATTTTGAGTTTTATTTTATTTATTTATATCTTTTGTGAAAAAATTTGTTTTACTGCCTCACATCTTAATTCTGCTTATGGGATTGGCAACAACGTAGGGCCTAGTCATTTCATTAGTACATGTACAAAATACTTTCCTGAGCCTGTTTCTCCTTAGCTCCTTCCGCTGATTTTTATCTTTATTTAGTATTTGTTTTTGATAATGGTTAGTGTTACTTTCAGAAACTTCAGTTGGTAATCTCTTTAACTAAAGATGCAAATACATGGGCAAGTGTCCCTATTCGCATTCCTTGTTTTGCATTCATGAATATTCTGAAAAGAGATAGAACTGAAAAGAGGTAACTTGAACCTTCTCATTTAGTATGAATGCGATATGTTTGTTTTCTTTTTGGGAGATTTGGTATGAAAGAGCCATCTGTTCTTTTATGATTCTAGAAAAAACGAGAAGGAACAAACTATTCATTTTCATGTTTCTTTTAGTTATTAGGCTGCTATATTAAGAACAGTTTTGTAGCTTTTCTCCAAAAAAGAAGAAGGAGAACGAGCAGTTTTGTATCTCTCTTTTTGTTTTTGCAATTCTAGCCAATTGGAAAGTATATAATATTAAGGGCCTTTGTTTGAATGGATATCTAATCTCCAGTCCTTTTCCTTTTAGAGTTAATGCAAATGCTGTCTGTTAAAAAAAGAAAATGCTCTGTTTCCACCATTTTTACCTAATTTGAACATCTGCACTAACCCAACCAGAGATAATATAGATATAAATTTCTTCCACAGTTCACTTAGCCAATTTGAACTAAACAGTCTATGCCTTTATGTAAATGTTGTTCTTCAGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAACATTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAAGCAGTATGATTCTGATCAACACACATTGAAATGATTAACAATTTCATGTCTTGTTTGCATTTTTCTGAATCCAAGTAATAAAACTGCTGAGGTTTGAGAATGGTTTCATACACGCTTTAAACTTACAAATAAGAAATGGAAAAAGTGGGCGTTTTTTATCAAATATATTAGTTTTGTTATGTAAATCCAAAGTTTGTGCATGCTCTCTCCAATATTGTCCAAATATGAAAAAAAGATTTATATTGTTTATAACATTTTTTGTGACTGCTCTTTGAATAATTTACTATCTTTGTATAGCTTCTTTGTCTTCTCTATCCATATATTGGACTTCAGAATTAAATTTATTTCCTCAAGTTTCTTAGCTCCTGGAATTTTGTTTATGGTTGCAGTTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTACAATCATGTGCACTGAGAAGAAAACTTCTAATGCTAGAATGATTCCATACTACTTTGATTTGTAATTGGTCACATTATTATCTATTTTACCAATTTATTCAATGGGTTTGGCATTTTAAATCATGATGTGGCTTTTTACAACAGTAATATGGAAGAATTTCATACAAGAGTAGTATTAGAAATATGATTTGCATTTTTTTTTCTAAAGTCATTTAACTTCAAGAGTTGTTCGATAAAACTAACATTTGTGAAGTACAAGA

mRNA sequence

AAAAGAAAACGAATTTCGAGCGGGAAAATCTTGGTCGACGATCCATTCTCATTTCTCAGTGCTCAAAAGAGCGGCAAGTGTAGAATCTGAAGTTTAAATGGTCCACTGAATTTCCTCGCCAGAAATCCGAAGCATCAACCTGGGTTTAGGGTTTTTGAGTTTGGGGTTGCTTCACAATTAATCAAATGAATACTGAAAACGAGAGGAAAGGGGAAGTAACCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGTGCAATTAAATTCGATGGTCCTTGCTCTGTTTCTCATTATTTTAAACCCAAATCCACTGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGATGGTTTGACTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACAGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGTTCAAATAAGCAGAGATTGAACACTGATACTGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAACATTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGATTACAATCATGTGCACTGAGAAGAAAACTTCTAATGCTAGAATGATTCCATACTACTTTGATTTGTAATTGGTCACATTATTATCTATTTTACCAATTTATTCAATGGGTTTGGCATTTTAAATCATGATGTGGCTTTTTACAACAGTAATATGGAAGAATTTCATACAAGAGTAGTATTAGAAATATGATTTGCATTTTTTTTTCTAAAGTCATTTAACTTCAAGAGTTGTTCGATAAAACTAACATTTGTGAAGTACAAGA

Coding sequence (CDS)

ATGAATACTGAAAACGAGAGGAAAGGGGAAGTAACCGTGGATTTTGATTTTGGAAGTGACTCTGTAGCTTTGGATCTCAGTGGTAAAGTTCATCAACTTCCCTGTGCAATTAAATTCGATGGTCCTTGCTCTGTTTCTCATTATTTTAAACCCAAATCCACTGTTTCTTTTTCATTTTTGTTCTTGCCTATTGAAGGAATGGAGGTTGATGGTTTGACTGTTGAGGAAGCTTATTTCAGAGGAAGAAAGTTACAGGGAGCAACCATTTCCCTTCCGGAGGGCTACTCTGTTTCAAGACCCACTTCAGTTGGCTATGGTGACTGTAAGAGTTCAAATAAGCAGAGATTGAACACTGATACTGGCTATGTGCTAGGGAGGAAGAGTCTAGCTTCTGAACATCGTCAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGAAAACATTACATATTGGAACCATGACACCCTACCGTCACAGGACGATATGTTCCAACGTTCTTTTCACTGGCTGACTGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGACTTGGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

Protein sequence

MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS

Homology

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BLAST of Clc01G09830 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-71
Identity = 149/201 (74.13%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 1   MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFL 60
           MN ENERKGEV VDFDF SDSVALDLSGKVHQLPCAIKFDGPCSVS YFKPKST      
Sbjct: 1   MNAENERKGEVIVDFDFESDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKST------ 60

Query: 61  FLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDT 120
                G+E DGL+VEEAYFRGRKLQGATISLPEGYS                        
Sbjct: 61  -----GIEFDGLSVEEAYFRGRKLQGATISLPEGYS------------------------ 120

Query: 121 GYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQA 180
           GYVLG+KSL    ASE  Q+SSPWQVKAKF NITYWNHDTLPSQDD FQRSFHWLTVAQA
Sbjct: 121 GYVLGKKSLGKRKASEQDQNSSPWQVKAKFANITYWNHDTLPSQDDTFQRSFHWLTVAQA 166

Query: 181 LHKPVTAEDLASASTALKNMS 198
           LHKPVTAEDLASASTALKNMS
Sbjct: 181 LHKPVTAEDLASASTALKNMS 166

[Close]

BLAST of Clc01G09830 vs. NCBI nr
Match: XP_011660323.1 (uncharacterized protein C12B10.15c [Cucumis sativus] >KGN66902.1 hypothetical protein Csa_007140 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 5.5e-69
Identity = 141/199 (70.85%), Postives = 150/199 (75.38%), Query Frame = 0


Query: 1   MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFS 60
           MN +NERKGEV V  DFDFG+D  ALD+SGKVHQLPC IKFDGPC VSHYFKPKST    
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKST---- 60

Query: 61  FLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNT 120
                  G+EVDGL +EEAYFRGRKLQGATISLPEGYS                      
Sbjct: 61  -------GIEVDGLNLEEAYFRGRKLQGATISLPEGYS---------------------- 120

Query: 121 DTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALH 180
             GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALH
Sbjct: 121 --GYVLGKKSKASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALH 164

Query: 181 KPVTAEDLASASTALKNMS 198
           KPVTAEDLASASTALKN+S
Sbjct: 181 KPVTAEDLASASTALKNLS 164

[Close]

BLAST of Clc01G09830 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.5 bits (685), Expect = 4.7e-68
Identity = 142/201 (70.65%), Postives = 151/201 (75.12%), Query Frame = 0


Query: 1   MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFL 60
           M++ENERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST      
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKST------ 60

Query: 61  FLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDT 120
                G+EVDGL+VE AYFRGRKLQGATISLPEGYS                        
Sbjct: 61  -----GIEVDGLSVENAYFRGRKLQGATISLPEGYS------------------------ 120

Query: 121 GYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQA 180
           GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQA
Sbjct: 121 GYVIGRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQA 166

Query: 181 LHKPVTAEDLASASTALKNMS 198
           LHKPVTAEDLA+AS ALKNMS
Sbjct: 181 LHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Clc01G09830 vs. NCBI nr
Match: XP_023001622.1 (uncharacterized protein C12B10.15c [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-67
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFL 60
           M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKST------ 60

Query: 61  FLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDT 120
                G+EVDGL+V+ AYFRGRKLQGATISLPEGY                         
Sbjct: 61  -----GIEVDGLSVQNAYFRGRKLQGATISLPEGY------------------------Y 120

Query: 121 GYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQA 180
           GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQA
Sbjct: 121 GYVIGRKSLRKRKASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQA 166

Query: 181 LHKPVTAEDLASASTALKNMS 198
           LHKPVTAEDLA ASTALKNMS
Sbjct: 181 LHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of Clc01G09830 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFL 60
           M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKST------ 60

Query: 61  FLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDT 120
                G+EVDGL+VE AYFRGRKLQGATISLPEGYS                        
Sbjct: 61  -----GIEVDGLSVENAYFRGRKLQGATISLPEGYS------------------------ 120

Query: 121 GYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQA 180
           GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQA
Sbjct: 121 GYVIGRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQA 166

Query: 181 LHKPVTAEDLASASTALKNMS 198
           LHKPVTAEDLA+AS ALKNMS
Sbjct: 181 LHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Clc01G09830 vs. ExPASy Swiss-Prot
Match: Q8TDP1 (Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-05
Identity = 39/164 (23.78%), Postives = 61/164 (37.20%), Query Frame = 0


Query: 30  VHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGATI 89
           +H LPC +  DGP  V  +F P        +    EG+EV         FRGR L+G  +
Sbjct: 29  LHLLPCEVAVDGPAPVGRFFTPA-------IRQGPEGLEVS--------FRGRCLRGEEV 88

Query: 90  SLPEG------------YSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDS 149
           ++P G             S+ +P  +         ++ L  D    +G            
Sbjct: 89  AVPPGLVGYVMVTEEKKVSMGKPDPLRDSGTDDQEEEPLERDFDRFIG------------ 148

Query: 150 SPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPV 182
                 A F   T W  +T+P  D   + +  W ++A A+H  V
Sbjct: 149 ----ATANFSRFTLWGLETIPGPDAKVRGALTWPSLAAAIHAQV 161

[Close]

BLAST of Clc01G09830 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 39/148 (26.35%), Postives = 56/148 (37.84%), Query Frame = 0


Query: 29  KVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVDGLTVEEAYFRGRKLQGAT 88
           K   LPC I +DGP  V  YF  K  +S             +  +      RGR+L G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDKIQIS------------NNTHSKTTVCLRGRELNGEE 79

Query: 89  ISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLASEHRQDSSPWQVKAKFEN 148
           + LPE Y+         G     +    N +T          SE     S W + + FE 
Sbjct: 80  LDLPENYT---------GQVVLCDDGLENDET----------SEKEIPESTWCINSTFEK 136

Query: 149 ITYWNHDTL-PSQDDMFQRS-FHWLTVA 175
           +  WN D +  S+ D ++R    W+  A
Sbjct: 140 VMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

[Close]

BLAST of Clc01G09830 vs. ExPASy TrEMBL
Match: A0A0A0M1A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69
Identity = 141/199 (70.85%), Postives = 150/199 (75.38%), Query Frame = 0


Query: 1   MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFS 60
           MN +NERKGEV V  DFDFG+D  ALD+SGKVHQLPC IKFDGPC VSHYFKPKST    
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKST---- 60

Query: 61  FLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNT 120
                  G+EVDGL +EEAYFRGRKLQGATISLPEGYS                      
Sbjct: 61  -------GIEVDGLNLEEAYFRGRKLQGATISLPEGYS---------------------- 120

Query: 121 DTGYVLGRKSLASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALH 180
             GYVLG+KS ASE   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVAQALH
Sbjct: 121 --GYVLGKKSKASEQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALH 164

Query: 181 KPVTAEDLASASTALKNMS 198
           KPVTAEDLASASTALKN+S
Sbjct: 181 KPVTAEDLASASTALKNLS 164

[Close]

BLAST of Clc01G09830 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.6e-68
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFL 60
           M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKST------ 60

Query: 61  FLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDT 120
                G+EVDGL+V+ AYFRGRKLQGATISLPEGY                         
Sbjct: 61  -----GIEVDGLSVQNAYFRGRKLQGATISLPEGY------------------------Y 120

Query: 121 GYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQA 180
           GYV+GRKSL    ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQA
Sbjct: 121 GYVIGRKSLRKRKASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQA 166

Query: 181 LHKPVTAEDLASASTALKNMS 198
           LHKPVTAEDLA ASTALKNMS
Sbjct: 181 LHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of Clc01G09830 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 141/201 (70.15%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MNTENERKGEVTVDFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFL 60
           M++E ERK EV VDFDFGSDS A+DLSGKVHQLPCA+KFDGPCSVS YFKPKST      
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKST------ 60

Query: 61  FLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDT 120
                G+EVDGL+VE AYFRGRKLQGATISLPEGYS                        
Sbjct: 61  -----GIEVDGLSVENAYFRGRKLQGATISLPEGYS------------------------ 120

Query: 121 GYVLGRKS----LASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQA 180
           GYV+GRKS     ASE  QDSS WQVKAKFENITYWNHDTLP+QDD FQRSFHWLTVAQA
Sbjct: 121 GYVIGRKSHGKRKASEESQDSSSWQVKAKFENITYWNHDTLPTQDDTFQRSFHWLTVAQA 166

Query: 181 LHKPVTAEDLASASTALKNMS 198
           LHKPVTAEDLA+AS ALKNMS
Sbjct: 181 LHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Clc01G09830 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.5e-67
Identity = 139/203 (68.47%), Postives = 148/203 (72.91%), Query Frame = 0


Query: 1   MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFS 60
           MN +N RKGE TV  DFDFGSD  ALDLSGK+HQLPC IKFDGPC VSHYFKPKST    
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKST---- 60

Query: 61  FLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNT 120
                  G+EVDGL VEEAYFRGRKLQGATISLPEGYS                      
Sbjct: 61  -------GIEVDGLNVEEAYFRGRKLQGATISLPEGYS---------------------- 120

Query: 121 DTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVA 180
             GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVA
Sbjct: 121 --GYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVA 168

Query: 181 QALHKPVTAEDLASASTALKNMS 198
           QALHKPVTAEDLASAS AL N+S
Sbjct: 181 QALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of Clc01G09830 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.5e-67
Identity = 139/203 (68.47%), Postives = 148/203 (72.91%), Query Frame = 0


Query: 1   MNTENERKGEVTV--DFDFGSDSVALDLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFS 60
           MN +N RKGE TV  DFDFGSD  ALDLSGK+HQLPC IKFDGPC VSHYFKPKST    
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKST---- 60

Query: 61  FLFLPIEGMEVDGLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNT 120
                  G+EVDGL VEEAYFRGRKLQGATISLPEGYS                      
Sbjct: 61  -------GIEVDGLNVEEAYFRGRKLQGATISLPEGYS---------------------- 120

Query: 121 DTGYVLGRKSL----ASEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVA 180
             GYVLG+KSL    +S+   DSSPWQVKAKF+NITYWNHDTLPSQDD FQR+FHWLTVA
Sbjct: 121 --GYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVA 168

Query: 181 QALHKPVTAEDLASASTALKNMS 198
           QALHKPVTAEDLASAS AL N+S
Sbjct: 181 QALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of Clc01G09830 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-44
Identity = 96/185 (51.89%), Postives = 121/185 (65.41%), Query Frame = 0


Query: 12  TVDFDFGSDSVAL-DLSGKVHQLPCAIKFDGPCSVSHYFKPKSTVSFSFLFLPIEGMEVD 71
           T+DF   +D  ++ DLS +VHQLPC I+FDGP  VSHYFKPKS+            +E+D
Sbjct: 3   TIDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSS-----------DVEID 62

Query: 72  GLTVEEAYFRGRKLQGATISLPEGYSVSRPTSVGYGDCKSSNKQRLNTDTGYVLGRKSLA 131
           G+  EEA+FRGRKLQGATISLP GYS       G+   ++SN   LN +       K  A
Sbjct: 63  GVKTEEAHFRGRKLQGATISLPSGYS-------GFVLRQASN---LNAN------GKRKA 122

Query: 132 SEHRQDSSPWQVKAKFENITYWNHDTLPSQDDMFQRSFHWLTVAQALHKPVTAEDLASAS 191
           S   +D+  W+VKAKF N+TYWNHD+LPS+DD F RSFHW ++A+ALHKPV  EDL + S
Sbjct: 123 SMPTEDNQCWEVKAKFNNLTYWNHDSLPSKDDTFFRSFHWFSIAEALHKPVKVEDLVAVS 160

Query: 192 TALKN 196
              KN
Sbjct: 183 HGGKN 160

The following BLAST results are available for this feature:

BLAST of Clc01G09830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893586.1	2.6e-71	74.13	uncharacterized protein C12B10.15c [Benincasa hispida]	[more]
XP_011660323.1	5.5e-69	70.85	uncharacterized protein C12B10.15c [Cucumis sativus] >KGN66902.1 hypothetical pr...	[more]
KAG6583796.1	4.7e-68	70.65	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023001622.1	1.4e-67	70.15	uncharacterized protein C12B10.15c [Cucurbita maxima]	[more]
XP_022927160.1	2.3e-67	70.15	uncharacterized protein C12B10.15c [Cucurbita moschata]	[more]

BLAST of Clc01G09830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8TDP1	2.0e-05	23.78	Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1	[more]
Q10448	1.7e-04	26.35	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]

BLAST of Clc01G09830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1A2	2.7e-69	70.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1	[more]
A0A6J1KH29	6.6e-68	70.15	uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P...	[more]
A0A6J1EN41	1.1e-67	70.15	uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094...	[more]
A0A5A7TIT8	9.5e-67	68.47	Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C9A8	9.5e-67	68.47	uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ...	[more]

BLAST of Clc01G09830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39440.1	1.7e-44	51.89	CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.128.680		coord: 2..184 e-value: 5.9E-35 score: 121.6
None	No IPR available	PANTHER	PTHR47204	OS02G0168900 PROTEIN	coord: 15..191
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 30..177 e-value: 1.4E-23 score: 83.6
IPR013924	Ribonuclease H2, subunit C	CDD	cd09271	RNase_H2-C	coord: 31..155 e-value: 5.04499E-28 score: 99.3675

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G09830.2	Clc01G09830.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0032299	ribonuclease H2 complex