Clc01G09490 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G09490
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LOB domain-containing protein
Location	ClcChr01: 10628378 .. 10632189 (+)
RNA-Seq Expression	Clc01G09490
Synteny	Clc01G09490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAATTGTGGATCAAAATTCCTATTGTTTACAAAAGGGAAGAGAGAGAGAGAGAGAGAGAGAGGGTGGTGGGACGCACGTGTCGGAGGATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGTCATCTCTCCTCTTAAATTTAATCACCTATAACACATATTAACTAACTTACCACCTTTCTTTCTTCATTTCCTCTAAACCCCATCTCTCTTTTTCATGTTTTTAAAACAAGCTGGAAGTTATATGTTCATGTTAACTTATCATTAAATAATGTTATGAGTTGTAGTCTTATCATTATCATTGCTGAATTAAAAAAAAAAAAAAAAAATGGTTTGATTAAATAGTTTCTTTTTTTTTTTTTTCTCTCTCTCTTTTTGGGTTTCTCTTGGGCAGTGTATGAAAGTGGTTTAGGAATTTTGCAACAATCTTTGACCAAAACTATTCTAACTTTATCATGACTCTTTGGTTTGGCTGCAGTGTTCTTAGGCAGGATGTCAAAAGATTAATTATCAAAACTAATATGTATAAGGTTTAAATGTTTGAATCTCTTATTTATTTTATATTGTTGAATTAAAAATTAAAAAAGCTTTGATTTATTTGTTGTCATTTATTGTTACCAAAATACAGATTTTTTCTCCCTAAATATTTATTAAACTCTAAGAATTTTTAGATTATATATAGATTTTTTTTTCTTTTTTTTGACATTATGCAGAGTGGAGATCGAACATTTGAGATTGATATTATATGTCTAACGTGAGTAGAACTATGATCATTTTGACATTAGAACTTTATTGTCAACTCTCTTGTAAAAATGTTGACAAATTTTAGTTGAGTTACCATCACATGCTAATAAGATCCATCACCAAAATATAATAATATAATTCAAATGTCAGGGATGTAATTGGAGTTTTAAAAGTTTCTAAGTAATACAAAGAATCAAATGTGTTCAATATATAATAACTAAATATATAATTAATATATTTAAATAAGATTATTTCTTTCTTTTTAATTAACAAATTTTAAAGAAAAGAAAATGGTGGCTATTGCTATCAACTTTAACGGTATAACCTTTCATTGCGACCGTTAATTAATTAATAAAATATTGTTGTGGAAAATACAAAAAGGTGTGTCTTTTCATTTAAGAAAAGCATCAAAATTTCTTTTTTTTTTTTTCTTTTAAAAAAAAAGTTCAAACAACTCTTTGAAAAAAGAGTTAGTTTCAAGTCAAATTCATCATGTAGATCAAACAAATTAATGAAATTACAAAAGCAACCTTATAACTTTGGCTATTACTTTACAAACCTACTTGATTACAAATTTGTAAACATGTACCCTTTTATTAGTTTAAGAAAGTTAATATACACGTTAAATCAGGACATAGTTGACAACAAATGAAAATCACGGAGATCTTATTGTACTTATAACCAATTAAAATGAAGAACTTCAATTATAATATCATATAATTTTAATTTATAAGAAATGAAAAAAAAATAAAAATAAGTTGCTAACATGTTGGATTTTATTTATTTTTTTATTTTTTTTATCTTTTAGAAAAATATGTTAGTTTGGTTAAGAAAATATATAAAATGAATCAATTTTTCCATAAAAGCTATTAAGAAGAGAATATAGTTAACTAATAAATTTAAGGTCAACTTAGGTCATTAAAGGAGACTATAATTGATAAATTAATTAATTTTCAAATCTAAAATTTTAAATAAATTATCTCAAATCACATGCCTTTTGGATTTTAGCTTTTAACCTTCTCTCAATTTGCCTTGTACGTCATGTGATTTTTTTTTTTTTTTTAAGTTTAATTAATAAATTTCTAGTTGTTAGAGGAAAAAAACATATATTTAAAGGTTTTTTTCAAATATAACAAAATGAAGCAAAATATTTACAAATATAGCAAAATTGTACTGTCTATCTGCGATAGATCCCGATAGATTGCAGTAGACTACTATCATGACGCAGATAATAATCTATCGCGGTCTATCGCAGATAAACTGTGTATTTTGCTGTTAGTTGTAAATATTTTCAGCGATTTTGTCATTTAAGATAATTTTTTTATATTATATTTTAATTATTATTTTTTTAAAAAAAAAACATATATTTAATTTAGCTAAAAAAGAAGGGAAAAAATGTTTTATATGGACTTTTTGGGTTAATTGTGGGGAGCCACCCACCCCTTTTGCTTGTTTGTGGAGGGACAACCAACAAATAAAAACCAAATTAGAAACTACCATACCATCCTAACTTTTTATCATACAATTGAACTTAGAATATATTATAATATTGACCACTAGAATTTTGGTCTAAATTTTAGTTTGTTTGTTTACCTTCCAATATTTGTTTACTTTATAAAATAAACAATTAATTTGCATGTTGCCACATATTTTCTTTCAAATTTTTAACAAAAATTTATGATAAAAACATGTTATTTGTTTATTCCCTCTAATTACTGATACTTATTTAATAATCATTTGATATTTTTTAAAACTTAAATTTATAACCACTCTCCGCTTTGTTTAACTATATTTTTAACCAATGTTTTTGATAATTAACCCAAGTTTTGAAAACTAAAAAAAATGAAAATAAATATTTTTTTTGTTTTTAAAATTTAGCTAGAAATTCAACTCTTTTATTCAAGAAATATGTAAATTATTATAAAAAAAATCCAAAACAAATAGGATTATTTGTTAAAAACAAAAAATAAAACCCAAATGGCTACTAAACCGGGCTTAAATGTCTAAGATTAGTTGAGAAAGTTTTTTTTTTTTTTTTTTCATTGCAAACTTTAGGGCCTAAAACAAAATATTTGAAAGTTAACTAACTAAACAACAATATTTAAAAAATTAGAGATGTAAACTCGAAATAAGGGAGGAAGTTCATAGATTAAAGAAAATATATATGAAGTTAACTTAAAATTTAATTTAACCATGATATTCTATTTTATTATAAGAAGATTCTAATCTAACTTGTAGGTTAAAAACAATTCTCCGATGAAACCACGGCTAAACAAAATTCTATCTCATAAGTTTAAATCTTCTTATTCTCATGTATATCTTTCTATTTCAAAAAATAAAAAATAAAAAAGTTGACGTTATTGTGAACGTTGCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGATATATCATACTACTATTATTTCCCCAAAATCCCATTTCCATGGAGATTTAGTTAGTTTTGCTTCCTTTTCTTTTCTACCCTATTTTGTCAATTTGGCTTTCACTTGCTTGTTGGCCATTTGATCACTACTTATATACTACTTACGTTAATTTCGTGTATGCCGACCTGAGCATAGCTCAAGCAGTCTGGTGATGTCTTTTTTTTC

mRNA sequence

GTCCAATTGTGGATCAAAATTCCTATTGTTTACAAAAGGGAAGAGAGAGAGAGAGAGAGAGAGAGGGTGGTGGGACGCACGTGTCGGAGGATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGATATATCATACTACTATTATTTCCCCAAAATCCCATTTCCATGGAGATTTAGTTAGTTTTGCTTCCTTTTCTTTTCTACCCTATTTTGTCAATTTGGCTTTCACTTGCTTGTTGGCCATTTGATCACTACTTATATACTACTTACGTTAATTTCGTGTATGCCGACCTGAGCATAGCTCAAGCAGTCTGGTGATGTCTTTTTTTTC

Coding sequence (CDS)

ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA

Protein sequence

MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW

Homology

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BLAST of Clc01G09490 vs. NCBI nr
Match: XP_038895183.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-86
Identity = 166/172 (96.51%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDM VDQA+GDSMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMAVDQAIGDSMW 170

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BLAST of Clc01G09490 vs. NCBI nr
Match: XP_004145462.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical protein Csa_006984 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 6.3e-85
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSR MFEMDMVVDQAM +SMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

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BLAST of Clc01G09490 vs. NCBI nr
Match: XP_022927419.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB domain-containing protein 4-like [Cucurbita maxima] >XP_023520045.1 LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >KAG7019437.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of Clc01G09490 vs. NCBI nr
Match: KAG6583812.1 (LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.9 bits (821), Expect = 6.9e-84
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDNLQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

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BLAST of Clc01G09490 vs. NCBI nr
Match: XP_008459081.1 (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 320.9 bits (821), Expect = 6.9e-84
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+ DSMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

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BLAST of Clc01G09490 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.7e-65
Identity = 127/171 (74.27%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+ RKQG    A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQ
Sbjct: 3   ESSRKQG---AASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVR
Sbjct: 63  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMF-EMDMVVDQAMGDSMW 173
           Q+  F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++G+SMW
Sbjct: 123 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of Clc01G09490 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 11  GGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 124
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of Clc01G09490 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.1e-39
Identity = 88/165 (53.33%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 12  GTGAAPCAACKLLRRRC-GEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 71
           G   +PCA CKLLRR+C  + CVFAPYFPA +P+KFA VHK+FGASNVNKMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 72  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR---QTAP 131
            DAV S+VYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R      T P
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 132 FSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
                 + T PSN    S            +M +      GD +W
Sbjct: 129 PPYTASTVTFPSNKDFYSD----------IDMAVAYTDDAGDFLW 163

[Close]

BLAST of Clc01G09490 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 84/171 (49.12%), Postives = 106/171 (61.99%), Query Frame = 0


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR------------Q 136
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ ALQ +L   ++E++  + R            Q
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQ 164

Query: 137 TAPFSNYG------LSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGD 170
            A F N G        P  P+    P++    S S  +F      D   G+
Sbjct: 165 VAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPSPSSCVFSQPTTRDLEYGN 215

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BLAST of Clc01G09490 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 78/140 (55.71%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 136 TSPSNSGSPSSRLMGSQSRP 156
           ++    G+    +   Q  P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

[Close]

BLAST of Clc01G09490 vs. ExPASy TrEMBL
Match: A0A0A0LYG0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRLMGSQSR MFEMDMVVDQAM +SMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of Clc01G09490 vs. ExPASy TrEMBL
Match: A0A6J1KP63 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of Clc01G09490 vs. ExPASy TrEMBL
Match: A0A6J1EHY2 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111434249 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG ++ GG GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDMVVDQAMGDS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of Clc01G09490 vs. ExPASy TrEMBL
Match: A0A1S3CAK2 (LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.3e-84
Identity = 163/172 (94.77%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGRKQGG  GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGRKQGG--GAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHL 120
           MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
           RVRQTA FSNYGLSPTSPSNSGSPSSRL+GS SR MFEMDMVVDQA+ DSMW
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of Clc01G09490 vs. ExPASy TrEMBL
Match: A0A6A2ZAV1 (LOB domain-containing protein 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110962pilonHSYRG00022 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.4e-74
Identity = 140/170 (82.35%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+GRKQG    A+PCAACKLLRRRC ++CVFAPYFPAD+PHKFANVHKVFGASNVNKMLQ
Sbjct: 3   ESGRKQG---AASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           +LP+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAE +HLRVR
Sbjct: 63  DLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEAMHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQA-MGDSMW 173
           QT PFSN+G  P SPS+SGSPSSRLMGSQ++P+F+MDMV+DQA +G+SMW
Sbjct: 123 QTVPFSNHGFGPASPSHSGSPSSRLMGSQAKPIFDMDMVLDQASLGESMW 169

[Close]

BLAST of Clc01G09490 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 248.4 bits (633), Expect = 4.1e-66
Identity = 127/171 (74.27%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 4   ENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           E+ RKQG    A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQ
Sbjct: 3   ESSRKQG---AASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 62

Query: 64  ELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 123
           ELPIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVR
Sbjct: 63  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 122

Query: 124 QTAPFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMF-EMDMVVDQAMGDSMW 173
           Q+  F  +GL P SPS+SGSPSS+ +  Q ++ MF  MD+V + ++G+SMW
Sbjct: 123 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of Clc01G09490 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.6e-46
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 11  GGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR 124
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of Clc01G09490 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-40
Identity = 88/165 (53.33%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 12  GTGAAPCAACKLLRRRC-GEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQR 71
           G   +PCA CKLLRR+C  + CVFAPYFPA +P+KFA VHK+FGASNVNKMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 72  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR---QTAP 131
            DAV S+VYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R      T P
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 132 FSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 173
                 + T PSN    S            +M +      GD +W
Sbjct: 129 PPYTASTVTFPSNKDFYSD----------IDMAVAYTDDAGDFLW 163

[Close]

BLAST of Clc01G09490 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 154.5 bits (389), Expect = 8.0e-38
Identity = 84/171 (49.12%), Postives = 106/171 (61.99%), Query Frame = 0


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVR------------Q 136
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ ALQ +L   ++E++  + R            Q
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQ 164

Query: 137 TAPFSNYG------LSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGD 170
            A F N G        P  P+    P++    S S  +F      D   G+
Sbjct: 165 VAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPSPSSCVFSQPTTRDLEYGN 215

[Close]

BLAST of Clc01G09490 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-37
Identity = 78/140 (55.71%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 136 TSPSNSGSPSSRLMGSQSRP 156
           ++    G+    +   Q  P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

The following BLAST results are available for this feature:

BLAST of Clc01G09490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895183.1	1.9e-86	96.51	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004145462.1	6.3e-85	95.93	LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical prote...	[more]
XP_022927419.1	3.1e-84	93.64	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB do...	[more]
KAG6583812.1	6.9e-84	93.64	LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_008459081.1	6.9e-84	94.77	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]

BLAST of Clc01G09490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	5.7e-65	74.27	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	5.0e-45	73.45	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	4.1e-39	53.33	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8L5T5	1.1e-36	49.12	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9FML4	3.3e-36	55.71	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]

BLAST of Clc01G09490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYG0	3.0e-85	95.93	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV...	[more]
A0A6J1KP63	1.5e-84	93.64	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252...	[more]
A0A6J1EHY2	1.5e-84	93.64	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
A0A1S3CAK2	3.3e-84	94.77	LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=...	[more]
A0A6A2ZAV1	5.4e-74	82.35	LOB domain-containing protein 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110...	[more]

BLAST of Clc01G09490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	4.1e-66	74.27	LOB domain-containing protein 4	[more]
AT2G30130.1	3.6e-46	73.45	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	2.9e-40	53.33	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G40470.1	8.0e-38	49.12	LOB domain-containing protein 15	[more]
AT5G63090.2	2.3e-37	55.71	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 13..161
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 13..161
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 17..114 e-value: 2.5E-43 score: 146.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 16..117 score: 26.47366

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G09490.1	Clc01G09490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010087	phloem or xylem histogenesis
molecular_function	GO:0000976	transcription cis-regulatory region binding