Clc01G09300 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G09300
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 10261235 .. 10262406 (+)
RNA-Seq Expression	Clc01G09300
Synteny	Clc01G09300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGACAAACAGACAGCTTCCTGCTCCGTCGTCCGCTCCAAACAGAACTTCACCTTCTCTTTCCCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTACATTTCATTTATTTTCATTTACTTTCTGTTTCGATTAACATCGTTCCCTTTTTTCAACCCACCACCCCATTTTACGTCCTTCCTTTCTCTTTCTCTCTCATTTTCTCACATACCCACATCCCCATTTTTGTTCTTTCTTCCAATTTCTTTCTTCTGCGGGACTTCCATTCAATTTCTGGTAACATTCTCTTTTCTTTTTGCTGTTTTCCTATCTGGGTCTTGCTTGGATTGATGCAATCTGTTTTCCCTTTTCATTCTTTATGATTTGCTTTCTGACTCTTGCTTTTGAAGATCTTTTGAATCACTGGATTCCCAAATGGGAATTCAAATTCTAATGTTTTTCTTTCTACTGTTTCTGTCTTGTTTGCCATTTTCCCCCTTGTTTCAGTTACTTCTTTGCGATCAAAACTGTTCAGTTAGCTGGACGTGAACGTTTTCATTTTTTCCTTTTAATTTATTACGTTACTATTGTTTTTGTTTTTATGTGGGATTTTCTTCCTTTGATCCCCCTGCATCTCTGTTTAGGGATTGATTTCTTTGTTCTTTACTTGTTTGTCTTGGTGAAAGTGGAAATGACTGGTGACGTGATTCTTGTTTTTGAAGAAAAATTTTTAGTGCCTTTCTTTTAATGTTTACTCCTAATGGGGATTGATCTGTAATTTTAAATTTGCGGTCTGATTGCTACTTGGTTTCCATTTATCCATGGTTGATTACTATAATTTGCATTATACTTTTTGTAATCTTATCAGCATCAATGAAGTGGAGTTGGTTTTTCTCTTTTTTTTTTTTTTTTTTCGTCCTTGTTATGTAGTTTGAAAAAAGAAGTTATTATATTTTATATTTCCTAAATTTTTTTAAAACTTGGAATTTTATTTAAATTTGGCCTTGCTTTTGATTTCTGCTTGTGGGGTTTCTCCTGTTAGTATTTTGTCTCCATTTGTCATTCAGAAGTTAGAGATTTGAAAGTGATCATATCTTGAGGGTTCACATTTGTGGCTGGTTTACTTAACAGAATTTACTGATAAGTTTTTGGTTAATTTGCAGGATTTTTTACACCACAGTTCCATCCTTAA

mRNA sequence

ATGTGGACAAACAGACAGCTTCCTGCTCCGTCGTCCGCTCCAAACAGAACTTCACCTTCTCTTTCCCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTACATTTCATTTATTTTCATTTACTTTCTGTTTCGATTAACATCGTTCCCTTTTTTCAACCCACCACCCCATTTTACGTCCTTCCTTTCTCTTTCTCTCTCATTTTCTCACATACCCACATCCCCATTTTTGTTCTTTCTTCCAATTTCTTTCTTCTGCGGGACTTCCATTCAATTTCTGGATTTTTTACACCACAGTTCCATCCTTAA

Coding sequence (CDS)

ATGTGGACAAACAGACAGCTTCCTGCTCCGTCGTCCGCTCCAAACAGAACTTCACCTTCTCTTTCCCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTACATTTCATTTATTTTCATTTACTTTCTGTTTCGATTAACATCGTTCCCTTTTTTCAACCCACCACCCCATTTTACGTCCTTCCTTTCTCTTTCTCTCTCATTTTCTCACATACCCACATCCCCATTTTTGTTCTTTCTTCCAATTTCTTTCTTCTGCGGGACTTCCATTCAATTTCTGGATTTTTTACACCACAGTTCCATCCTTAA

Protein sequence

MWTNRQLPAPSSAPNRTSPSLSPSFFLSFFLSLHFIYFHLLSVSINIVPFFQPTTPFYVLPFSFSLIFSHTHIPIFVLSSNFFLLRDFHSISGFFTPQFHP

Homology

[Close]

BLAST of Clc01G09300 vs. ExPASy TrEMBL
Match: A0A0A0M194 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554530 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 50/87 (57.47%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MWTNRQLPAPSSAPNRTSPSLSPSFFLSFFLSLHFIYFHLLSVSINIVPFFQPTTPFYVL 60
          MWTNRQLPAPSSAPNRTSPS S        LS  F+YFHLLS SI +      TTP    
Sbjct: 1  MWTNRQLPAPSSAPNRTSPSSS--------LSPSFLYFHLLSDSIPL------TTPPI-- 60

Query: 61 PFSFSLIFS---HTH-IPIFVLSSNFF 84
           F+FSLIFS   H H    FVLSS+ F
Sbjct: 61 -FTFSLIFSQYPHPHFFFFFVLSSSNF 70

The following BLAST results are available for this feature:

BLAST of Clc01G09300 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G09300 vs.


Match Name	E-value	Identity	Description

BLAST of Clc01G09300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M194	1.6e-06	57.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G554530 PE=4 SV=1	[more]

BLAST of Clc01G09300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G09300.1	Clc01G09300.1	mRNA