Clc01G08993 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G08993
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNase H domain-containing protein
LocationClcChr01: 9651781 .. 9652616 (-)
RNA-Seq ExpressionClc01G08993
SyntenyClc01G08993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGGTCTGATTGGAATGCTTCGCTAAATTTTGAGAATTTAAATCTAGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAATGTTCGGGTAGGCAAACCTATAGCTGACACTATGATCAAAAGAGGATGAGGTTTTAAATACCTTGAAGAATTTTAGAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTTGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGGTAAATCAGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA

mRNA sequence

ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAATGTTCGGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA

Coding sequence (CDS)

ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAATGTTCGGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA

Protein sequence

MPLSPVREPTFFERVFLPLCFQGRIKAEVSKINAAITYWAIWNDRNNVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPCNALVAL
Homology
BLAST of Clc01G08993 vs. NCBI nr
Match: CAA7041153.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 81.6 bits (200), Expect = 8.1e-12
Identity = 55/203 (27.09%), Postives = 90/203 (44.33%), Query Frame = 0

Query: 21  FQGR---IKAEVSKINAAITYWAIWNDRNNVRAKEAKKLEITKLWQRPSIGTLKLNVDAA 80
           FQG+   ++  + ++      WA   +  N   ++ +       W+RP  G +K N D A
Sbjct: 567 FQGKDYSVQETLQRVQEDAEEWARSREEENKGQQQPRTSTPRDKWKRPKEGWIKCNSDGA 626

Query: 81  WILDPPSTGLGAILRDHQHEAPL--------------AEFLAVKEGLRLAIPFRQKKLIV 140
           W  +    GLG ++R+ + +                 AE  A++  +R    F  +K++ 
Sbjct: 627 WPKEGAKCGLGWVMRNQEGKVMWIGAKAIPKTRTVIEAELEALRWAMRFLRRFNYRKIVF 686

Query: 141 ESDS----------DCW------FNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSC 190
           ESDS          + W       NEIR L   F  V+F + +R  NG ADR+AK A S 
Sbjct: 687 ESDSKELINMINEAEEWPMLQPGLNEIRHLVTHFDEVAFAFQSREGNGVADRVAKEALSF 746

BLAST of Clc01G08993 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11
Identity = 53/149 (35.57%), Postives = 67/149 (44.97%), Query Frame = 0

Query: 60  KLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQ--------------HEAPLAEFLA 119
           + W  P    +KLNVDAAW   P S+G  AI+RD+Q              +  PLAE   
Sbjct: 54  RTWSTPPTSFIKLNVDAAWKFSPYSSGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFV 113

Query: 120 VKEGLRLAIPFRQKKLIVESD-------------SD----CWFNEIRDLFDGFASVSFTY 178
           V +GLRL      KK+IV+SD             SD     W  EI ++   F  ++F Y
Sbjct: 114 VLQGLRLTSKMNFKKIIVKSDCSGAIDLFLKILISDSSVRVWLEEIWEISIVFYPINFAY 173

BLAST of Clc01G08993 vs. NCBI nr
Match: XP_042988669.1 (uncharacterized protein LOC122316201 [Carya illinoinensis])

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-11
Identity = 60/209 (28.71%), Postives = 84/209 (40.19%), Query Frame = 0

Query: 36  ITYWAIWNDRNNVRAKEAK-------------KLEITKL---------------WQRPSI 95
           +  W IWN RN    ++A              K E TK+               W  P I
Sbjct: 41  VVAWGIWNRRNKFIYEDASLNINTAVNNALSLKQEYTKVQVFPGFDKRINHVVYWHPPPI 100

Query: 96  GTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLA--------------EFLAVKEGLRLA 155
           G LKLNVD A   D  S G+G ILRDH  +  +A              E + +  GL+L 
Sbjct: 101 GCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASKVKREVSSVEFIEAITLLRGLQLC 160

Query: 156 IPFRQKKLIVESDS-----------------DCWFNEIRDLFDGFASVSFTYCNRGSNGT 186
             +   K+I+ESDS                 D    +IR L  GF      + +R  NG 
Sbjct: 161 AQWGVPKIILESDSLILVNCLNEDVECLTEFDFLLQDIRRLMHGFEETRLEHVHRLGNGA 220

BLAST of Clc01G08993 vs. NCBI nr
Match: MBA0758538.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10
Identity = 57/181 (31.49%), Postives = 77/181 (42.54%), Query Frame = 0

Query: 39  WAIWNDRNNVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQ--- 98
           W  WNDRNN   K   +  + K W +P +G +K+NVDA  +     TG+GA+ RDH    
Sbjct: 147 WNNWNDRNNTVLKRKMEAVVKKRWTKPPVGCVKVNVDATVL--NGCTGVGAVARDHDGFV 206

Query: 99  -----------HEAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIR--------- 158
                       +   AE  A K GL+L       +LIVESDS    N +          
Sbjct: 207 IGGCYNFQKTAMDISGAEVEAFKVGLKLEKNLNVGRLIVESDSAILVNAVNKRRLDITIL 266

Query: 159 --------DLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSL 189
                   D+F  F SV   + NR SN  AD + K A   + +  +   YP  I N +  
Sbjct: 267 GQCIRSECDVFSSFESVQVKWTNRNSNYAADFLCKLAIRNENDLYFDMEYPMDIHNIIIR 325

BLAST of Clc01G08993 vs. NCBI nr
Match: XP_042972859.1 (uncharacterized protein LOC122304666 [Carya illinoinensis])

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-10
Identity = 51/166 (30.72%), Postives = 74/166 (44.58%), Query Frame = 0

Query: 54  KKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLA------------ 113
           K++     W  P IG LKLNVD A   D  S G+G ILRDH  +  +A            
Sbjct: 83  KRINYVVYWHLPPIGCLKLNVDGATFSDSFSAGVGVILRDHNGDVVVAASNVEREVSSAV 142

Query: 114 --EFLAVKEGLRLAIPFRQKKLIVESDS-----------------DCWFNEIRDLFDGFA 173
             E +A+  GL+L + +   K+I+ESDS                 D    +IR L  GF 
Sbjct: 143 FIEAIALLRGLQLCVQWGVPKIILESDSLILVNCLNENSECLTEFDFILQDIRRLMHGFE 202

Query: 174 SVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLD 189
                + +R  NG A ++A+ A+       W+ S PS++   + LD
Sbjct: 203 ETRLEHVHRLGNGAAHQLARYAKEVDDIVMWWDSCPSFVSQAIWLD 248

BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A6D2JVB2 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 55/203 (27.09%), Postives = 90/203 (44.33%), Query Frame = 0

Query: 21  FQGR---IKAEVSKINAAITYWAIWNDRNNVRAKEAKKLEITKLWQRPSIGTLKLNVDAA 80
           FQG+   ++  + ++      WA   +  N   ++ +       W+RP  G +K N D A
Sbjct: 567 FQGKDYSVQETLQRVQEDAEEWARSREEENKGQQQPRTSTPRDKWKRPKEGWIKCNSDGA 626

Query: 81  WILDPPSTGLGAILRDHQHEAPL--------------AEFLAVKEGLRLAIPFRQKKLIV 140
           W  +    GLG ++R+ + +                 AE  A++  +R    F  +K++ 
Sbjct: 627 WPKEGAKCGLGWVMRNQEGKVMWIGAKAIPKTRTVIEAELEALRWAMRFLRRFNYRKIVF 686

Query: 141 ESDS----------DCW------FNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSC 190
           ESDS          + W       NEIR L   F  V+F + +R  NG ADR+AK A S 
Sbjct: 687 ESDSKELINMINEAEEWPMLQPGLNEIRHLVTHFDEVAFAFQSREGNGVADRVAKEALSF 746

BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A7J9DD45 (RNase H domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_021521 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.7e-11
Identity = 57/181 (31.49%), Postives = 77/181 (42.54%), Query Frame = 0

Query: 39  WAIWNDRNNVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQ--- 98
           W  WNDRNN   K   +  + K W +P +G +K+NVDA  +     TG+GA+ RDH    
Sbjct: 147 WNNWNDRNNTVLKRKMEAVVKKRWTKPPVGCVKVNVDATVL--NGCTGVGAVARDHDGFV 206

Query: 99  -----------HEAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIR--------- 158
                       +   AE  A K GL+L       +LIVESDS    N +          
Sbjct: 207 IGGCYNFQKTAMDISGAEVEAFKVGLKLEKNLNVGRLIVESDSAILVNAVNKRRLDITIL 266

Query: 159 --------DLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSL 189
                   D+F  F SV   + NR SN  AD + K A   + +  +   YP  I N +  
Sbjct: 267 GQCIRSECDVFSSFESVQVKWTNRNSNYAADFLCKLAIRNENDLYFDMEYPMDIHNIIIR 325

BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: Q10IA6 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g36000 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 48/161 (29.81%), Postives = 78/161 (48.45%), Query Frame = 0

Query: 46   NNVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDH----------- 105
            N + + +  K +I   W++P  G L +NVDAA+  D  S G+G +LRDH           
Sbjct: 1006 NYMLSNKKGKTKIQNGWKKPPEGMLMINVDAAFDFDSGSGGIGVVLRDHLGACVAASQAF 1065

Query: 106  -QH--EAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIRDLFDGFASVSFTYCNR 165
              H  +AP+AE  A+++GL LA     K +I+             ++DGF ++S  +CNR
Sbjct: 1066 LPHVLDAPMAEAFALRDGLSLAQHIGAKNVIL-------------MWDGFGTISIEHCNR 1125

Query: 166  GSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPC 193
             SN  A  +A+     K +   F ++  W  + + L +  C
Sbjct: 1126 NSNQVAHELARCLIGRKSSLVSFAAFQPWKCDSIPLPDQSC 1153

BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A5J9U9H2 (RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36016 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09
Identity = 49/185 (26.49%), Postives = 80/185 (43.24%), Query Frame = 0

Query: 46  NNVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQHEAPL----- 105
           ++V+ KE   +   K W +P  G  K+NVDAA+ +D    G+G I+R+   E  L     
Sbjct: 84  SDVKRKEPGNVRTIKKWVKPPCGRAKINVDAAFSVDSGRAGVGVIIRNDHGEIVLCSGRV 143

Query: 106 ---------AEFLAVKEGLRLAIPFRQKKLIVESDSDC-------------------WFN 165
                    AE LA KEGL L +  +   +  E +SDC                      
Sbjct: 144 VFNCASAEEAELLACKEGLNLGL--KWVAMPCELESDCLVVCNALKSNEENGSHYALLLR 203

Query: 166 EIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPC 198
           E+++L      V  T+CNR  N  +  +A  A     +  W  S+P ++ + ++ D   C
Sbjct: 204 EVKELIAELREVRITHCNRTQNRVSHILAGRASREMFSKVWLHSFPDFVASSVATD---C 263

BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A446K5I3 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G175360 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 0

Query: 61  LWQRPSIGTLKLNVDAAWILDPPSTGLGAILRD--------------HQHEAPLAEFLAV 120
           +W++P+ G +K+NVDAA+  +  +   GA+ RD              H   A  AE +A+
Sbjct: 1   MWKKPTSGRVKINVDAAFSPENMTGATGAVARDDRGDFIAATSCFISHVTSAKSAEVVAI 60

Query: 121 KEGLRLAIPFRQKKLIVESDSD----------------CWFNEIRDLFDGFASVSFTYCN 180
           + GL LA+      LI+ESDS                   + E R L   FA V   +C 
Sbjct: 61  RNGLILAMTIGCNSLILESDSSNAVDIINQEDYLGQEVSIYMECRHLGSDFAKVEVIHCF 120

Query: 181 RGSNGTADRIAKNARSCKINADWFFSYPSW----IVNHLSL 188
           R +N  AD IAKNA S + +  W    P +    IVN L++
Sbjct: 121 REANSVADSIAKNALSTRSSMVWDEGVPDFISLQIVNDLAI 161

BLAST of Clc01G08993 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 42/159 (26.42%), Postives = 67/159 (42.14%), Query Frame = 0

Query: 62  WQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQH---EAPLAEF---LAVKE------- 121
           W  P    LK N DA+       +GLG ILR+ Q    E  + +F   +  +E       
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

Query: 122 -GLRLAIPFRQKKLIVESDSDC----------------WFNEIRDLFDGFASVSFTYCNR 181
             ++ +  F  KK+I E D+                  + + I+     F S+ F++ +R
Sbjct: 165 WAIQASYGFGHKKVIFEGDNQTITRMINTKSSNPRLQHFLDTIQSWIPSFESIEFSFKHR 224

Query: 182 GSNGTADRIAKNARSCKINADW--FFSYPSWIVNHLSLD 189
             NG AD +AK A   K N  W  F S P ++  +++ D
Sbjct: 225 EQNGCADFLAKQA--IKENTQWSLFHSCPYFLSPYVNND 261

BLAST of Clc01G08993 vs. TAIR 10
Match: AT5G38920.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04
Identity = 42/172 (24.42%), Postives = 70/172 (40.70%), Query Frame = 0

Query: 39  WAIWNDRNNVRAK----EAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAIL-RD 98
           W +W +RN++  K    +A  +E+  +    S+ +      A  +  P  T  G +    
Sbjct: 26  WRLWKNRNDLVFKGKQFDAPDMEL-GMQNAASVAS------AGCLETPTRTCFGWVQGLS 85

Query: 99  HQHEAPLAEFLAVKEGLRLAIPFRQKKLIVESDS----------------DCWFNEIRDL 158
               A + E  A++  +        +K+I ESDS                D    +I+ L
Sbjct: 86  MTQSALVTEAEAMRWAVLSLSRLNYRKVIFESDSQQLVSILVDNGDMPILDPILQDIKLL 145

Query: 159 FDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFS-YPSWIVNHLSLD 189
              F    F + +RG NG ADRIAK + S +      +S  P W+ + + LD
Sbjct: 146 LQHFEETKFVFMHRGGNGVADRIAKESLSLENYDPKLYSIVPYWVKSFVELD 190

BLAST of Clc01G08993 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 8.7e-04
Identity = 36/131 (27.48%), Postives = 54/131 (41.22%), Query Frame = 0

Query: 64  RPSIGTLKLNVDAAWILDPPSTGLGAILRD-------HQHEAP-------LAEFLAVKEG 123
           RP +  + +  DAAW  +    G G ++R+       H   A        +AE +A+   
Sbjct: 25  RPDLDRVTIFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLA 84

Query: 124 LRLAIPFRQKKLIVESDSDCWFNEIRD----------LFD------GFASVSFTYCNRGS 165
           L+ A      KL + SDS      I            +FD      GFA VSF++  R  
Sbjct: 85  LQYAQSIGITKLSMASDSQQLITAITSESPSTEFYGIIFDILNLSLGFADVSFSFVPRSE 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAA7041153.18.1e-1227.09unnamed protein product [Microthlaspi erraticum][more]
XP_038902513.12.4e-1135.57uncharacterized protein LOC120089172 [Benincasa hispida][more]
XP_042988669.16.9e-1128.71uncharacterized protein LOC122316201 [Carya illinoinensis][more]
MBA0758538.12.0e-1031.49hypothetical protein [Gossypium trilobum][more]
XP_042972859.12.6e-1030.72uncharacterized protein LOC122304666 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6D2JVB23.9e-1227.09Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 ... [more]
A0A7J9DD459.7e-1131.49RNase H domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_021521... [more]
Q10IA62.2e-1029.81Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
A0A5J9U9H23.1e-0926.49RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=E... [more]
A0A446K5I34.1e-0931.68RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=T... [more]
Match NameE-valueIdentityDescription
AT5G65005.11.3e-0426.42Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT5G38920.15.1e-0424.42Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G09490.18.7e-0427.48Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 50..188
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 72..162
e-value: 7.41678E-19
score: 76.584
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 69..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G08993.1Clc01G08993.1mRNA