Clc01G08993 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGGTCTGATTGGAATGCTTCGCTAAATTTTGAGAATTTAAATCTAGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAATGTTCGGGTAGGCAAACCTATAGCTGACACTATGATCAAAAGAGGATGAGGTTTTAAATACCTTGAAGAATTTTAGAGAGCTCAATCTAGAAGGGTCTCAAATTCTCAGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACGTGAAGTGCTAGCTATTTCTGCTTGATCACTCAATTCTGCAGATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTGTCAGCTTGTGGTAAATCAGATAAACAACTTGAGTGAGCGTGATTTTTCAGCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAATGTTCGGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA ATGCCCTTGTCTCCTGTCAGAGAGCCTACCTTCTTTGAGAGGGTCTTCCTTCCCCTTTGCTTCCAAGGGAGAATCAAAGCGGAAGTTTCAAAGATAAATGCGGCTATTACCTACTGGGCCATTTGGAATGACAGGAATAATGTTCGGGCAAAAGAAGCAAAGAAATTAGAGATTACCAAATTGTGGCAACGCCCTTCGATTGGAACTCTCAAATTGAATGTTGATGCTGCTTGGATTTTGGATCCCCCTTCTACAGGACTGGGAGCTATTCTTCGAGACCATCAACATGAAGCCCCTCTGGCTGAGTTTCTTGCAGTCAAAGAAGGCCTTCGCCTCGCGATTCCTTTCCGCCAGAAGAAACTTATTGTGGAGTCGGACTCGGATTGCTGGTTTAATGAAATCAGAGATCTTTTTGACGGTTTTGCTTCAGTATCTTTCACATATTGTAATCGGGGGAGCAACGGTACTGCTGATAGAATAGCTAAAAATGCAAGGTCATGTAAAATCAATGCTGATTGGTTTTTCTCCTATCCAAGCTGGATTGTAAACCATCTGTCTCTAGACAATTGTCCTTGTAATGCCCTTGTGGCGCTTTAA MPLSPVREPTFFERVFLPLCFQGRIKAEVSKINAAITYWAIWNDRNNVRAKEAKKLEITKLWQRPSIGTLKLNVDAAWILDPPSTGLGAILRDHQHEAPLAEFLAVKEGLRLAIPFRQKKLIVESDSDCWFNEIRDLFDGFASVSFTYCNRGSNGTADRIAKNARSCKINADWFFSYPSWIVNHLSLDNCPCNALVAL Homology
BLAST of Clc01G08993 vs. NCBI nr
Match: CAA7041153.1 (unnamed protein product [Microthlaspi erraticum]) HSP 1 Score: 81.6 bits (200), Expect = 8.1e-12 Identity = 55/203 (27.09%), Postives = 90/203 (44.33%), Query Frame = 0
BLAST of Clc01G08993 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida]) HSP 1 Score: 80.1 bits (196), Expect = 2.4e-11 Identity = 53/149 (35.57%), Postives = 67/149 (44.97%), Query Frame = 0
BLAST of Clc01G08993 vs. NCBI nr
Match: XP_042988669.1 (uncharacterized protein LOC122316201 [Carya illinoinensis]) HSP 1 Score: 78.6 bits (192), Expect = 6.9e-11 Identity = 60/209 (28.71%), Postives = 84/209 (40.19%), Query Frame = 0
BLAST of Clc01G08993 vs. NCBI nr
Match: MBA0758538.1 (hypothetical protein [Gossypium trilobum]) HSP 1 Score: 77.0 bits (188), Expect = 2.0e-10 Identity = 57/181 (31.49%), Postives = 77/181 (42.54%), Query Frame = 0
BLAST of Clc01G08993 vs. NCBI nr
Match: XP_042972859.1 (uncharacterized protein LOC122304666 [Carya illinoinensis]) HSP 1 Score: 76.6 bits (187), Expect = 2.6e-10 Identity = 51/166 (30.72%), Postives = 74/166 (44.58%), Query Frame = 0
BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A6D2JVB2 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS28388 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12 Identity = 55/203 (27.09%), Postives = 90/203 (44.33%), Query Frame = 0
BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A7J9DD45 (RNase H domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_021521 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 9.7e-11 Identity = 57/181 (31.49%), Postives = 77/181 (42.54%), Query Frame = 0
BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: Q10IA6 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g36000 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10 Identity = 48/161 (29.81%), Postives = 78/161 (48.45%), Query Frame = 0
BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A5J9U9H2 (RNase H domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36016 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 3.1e-09 Identity = 49/185 (26.49%), Postives = 80/185 (43.24%), Query Frame = 0
BLAST of Clc01G08993 vs. ExPASy TrEMBL
Match: A0A446K5I3 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Bv1G175360 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09 Identity = 51/161 (31.68%), Postives = 74/161 (45.96%), Query Frame = 0
BLAST of Clc01G08993 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04 Identity = 42/159 (26.42%), Postives = 67/159 (42.14%), Query Frame = 0
BLAST of Clc01G08993 vs. TAIR 10
Match: AT5G38920.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 42.4 bits (98), Expect = 5.1e-04 Identity = 42/172 (24.42%), Postives = 70/172 (40.70%), Query Frame = 0
BLAST of Clc01G08993 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 41.6 bits (96), Expect = 8.7e-04 Identity = 36/131 (27.48%), Postives = 54/131 (41.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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