Clc01G08340 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G08340
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionmitochondrial intermembrane space import and assembly protein 40 homolog
LocationClcChr01: 8547036 .. 8552114 (-)
RNA-Seq ExpressionClc01G08340
SyntenyClc01G08340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAGGAAAAGTCATTTTTCTTCAATCCACTTTTCAAAGTTTAAACCTTCTATTAACCTTCTATTACAACGACCGCCCACTTTTCTACCGGTTCCAATTTGAGTTCGGAGAAGGATGGGTCAAGCTGAAAGCGTCGCCGCCGTATCGTCTCCGAACGATCTACCTCAAAGCCGGAATTCATCTGCAAGTCCCGTCTCCGGTCCTCCCTCCATGGAGTCTCTAATTGCAGGTCCCCTGCCTTCTGTTTAATCTTTCCGTGTCTTTTTGTTCTGTTCATATTCTACGTATCTGTAAAAATGTTTCTGTTAGTCAATGAAGCGATCCTTTTCATATAAGAATGATTCATGTTCAAGAAATTGAAATTTCGGGTGCTAAAATGTCCAAGGACTATCGTGAATTTCGTTAAATTTATTTTCTGTTCGTAGTATCGGTTGTTATTCTTCATAACATGCTCAGACAACAGGCGAAATTAGTCTGCAGTATGCCCTGCTTCTGTGAAGGGATTATATTCATCATTTACGGCCTGGTTTATTCATGGTAATAGGATCCATGATACTTTTCAAGGTTATAAACAAGTGATTGCATGGGTGACTATGGAGAGAGGCTAGTTGCTGAAGAAGAAGGATTCTGGGAAGTGGGTTAGCTAGGGGACTAGGAGTTGTCGCTCGAATTGGAGAGGGGAGCCGAGAAAGGATAGAATTAGAGCGGGTATTGGTAAGTTTCTACAAAGACATACCCAAAAGTTTGACATTGGAGCATAGTAGATTGATTGTGTTTGAGGTAAAGGTTGCTGTAGCAAAGGTTTTCAGAAAAGAACAATTGGGAAGAGAGTTGTGGAAAAGTTAAAAAAGGAGTTTTGTCTTAAGAACTGGTATGTGGAGCCTATTTATCAAATAAACTGTAGTATAAAATGCTTCGCCCAATTAAAGTGGCATACAGGCTTGAGCTAGGAGAGTCAATCCAGTTTCAACGAGACAGTGATGTTTTATCTCAGCTCTCATTTTAATAGTGGGATTGAAGAGACAAGATAATCTTGCTGGATTCCTTGTTCTTCTGCTGGTCAGCAAATTAAAGCAGTGGCAACTCTTGTCTACCAACTAGCATTTGTCTTCTTCAGCACTTGATTGGATGCCAAGCAAGGACTCGATGCATCCGGCGCCTTATGCTTTTGTATCCTATGACTTAAAACAATGTCAGCTATGTTTTGTATCCTATGACTTAAAAACAATTTCAGCTGTCATTTAATTGGATGCCAAGCCAGGACTTGATGCATCTGTCGCCTTATGTTTTGTATCCTATGACTTGAAAAACAATTTCAGCTGTCATTTAATTGTAAAACCACCCCCTGAAGATGTTAATTGGCTGCCATTTTGGAGTCACTATTTTATATTTTGATTTAGTAAGTTTCGTGGCCCTGTCTGTTGGTTGGCATTAGAGTGTGCGAGGGGGATAAACACAATGGACATCATCCATCAATTTCTTGCTTCTGCAAGATGTCCTTCAGGCTTCAAGTCTGTAGTTTATAAGAATTGGACGCCACTTTTGTTGTTACAGGATGTTGTAATGATCTAATTTGTGAGAGGTTACTGTATTATGTGGACCAGACTGCTTATAGGAGGCATCTAATTGAAACTTTTCCAGTGAAGACTTAACCTGAGTTGCACCATTCTTCAACTGCAAGTAGTTATTCTTTAGTTCTTCATTGACAGGGAATTTATTTGAGCGAACACTAGCGATTGTTGCTCAAATACCAACATAAAACTGAGGTTTTCTACAGACTAACCATTGAAGTCGTGAGATCTTATTCAGGTAAGGGGGTATATTACAGATTACATATGAGGCCAAACTGTAAATACCCCTGAAAAGAAAAGCAACAAACTACCACATGTATGAAATACTAAGCTGGCATCACAAAAGATAATTAGAAAAAACTGAATAATGCAGCCCTTTAATCAGAGAACAGATTGATATTATTTATCAAGTGTGCTTTAACAATTCTTTGTACACATAAAATGAAATATTATTTGCAATCCCCGTTGTACTAGTTCTCTTTAGTGTTAGATTTGAGGACATGTTTGATAATTAACAACTTTTTCATTCTTGCAGAAGCTGCAGCTTATGGTAATGAAACAAATGAGGTTTGTCCACTTTAAAGATTTAAGCTTCCTTTTGAAATTGGAATAGAAACCAAGAAGTTGACCCATGCTTCTTTCAGTCTCTTGATGCCAAAGCTAACAGAGCGTTAGAGTGCCCCTGCATAGCTGACTTGCGTAAAGGTCCATGCGGGGTCCAGTTTTCTGATGCTTTTCTTTGCTTCTTCAAGAGTACTGCAGAGGAAAAGGTAAGGAAAAAGAACGAACCACCACATTTTATATAGCTTTTAAGGAAAAATAAGAAGTTATGGCAAAGCTTTTTGGTTAAATTATATTTTTCGATCCCTACCTGTAATTGTAGTCAATTTGGTCTCTGCATAGCTATAAATTTCATTATGATTCATACATTTTTTTGTTAGAACTTACCAAATGTCTTTGACATTAGTGAGAGATAAGGGATTCAACATAGCAAGTTATTTGTGAGTGGTATGGCATATCAGTTCCGTAATATGATATAGAAATTTGATACATTACATCTGTTGAAAAACATGAAACAGTGCTAGGTATTTAGGCTTTTTTGGTTGAAAAGTAGAATTCAGGGCTATTGCTAATCTTGTTTAACACTGCAACTAATTATGCTTAGATTTCTATTACATATTTTTTTAAAAAATTCAGCTACAAACATTTAGAGCATCTGATATCCTTGGTTTTTTTACCAAAGGGTAAACGAAGTCTGAATATAGCTAAATTGGTTTAAGCCATAGATCTTAGACCAAGAGGTTAGGTGTTTAATCCTCACAACTCCAAGTGTTATGTGAACTCAAAAACTAAAGAATAAGCGAAATTTGTAAAATGTTTTAAGAAGTAAATTGAAACAACTATTAAGTTATGAGGGTCCCCCCCCCCCCCCCCCCCCCTCCAAATCTTTACAAAAATTGTTGTACAACTAACAGCTAAATTGTGATGTTTTCGAAAGGGATCGGACTGTGTGCATCCTTTTGTGGCTTTGCAGAGCTGCATAAAAGCAAACCCAAATGCATTCTCGAAGGATATCTTGGACGAAGATGAAGATGAAGAAGAAAAAGAAAGGGAAAAAGTAAAGGCTGAAGAGCCAACTCAAGATTACAGAGTCGTTCCTCCTTCATGGTCTAGAGAACCTCAAACTCCCAAGTCCAAGCTGTAACTCATATCATCAGCTTCCATTTTGTCTATCCTGGTATGATTGTTATGATTATTTATTGGGGATGTAGTTTACATTCTTATAATGAATAAGTTTGAGAATCTATTAGTTACATTTGTAGCAAATATTTCTGACTTTTCGATTTCTTCACCTAGTAGAACATTTTAAAATCAAGTCATAAAATATAAATTAAATATGAATTTATCAAACATGCTTTTATGAGTTTATGCAATACTAGGGATGCCGTGGATGTGGAAAGGTGACTCGAGAATCAAAAAAGCATATAGAGAGAGTATTTTGGTGGTGACCGAGATAGCTTTTAGCGACAAGTATGATGATTGGATTACAAAGACTCATAGTTAAAAAATTTGAAGGCACATAGATTTTTTTGGATTATGAAACATGCCTCGACTTCTCTAAGGCATAAAAATATCCTTTGACCTAAGTAGTCTTTACTCAGGCTAATCTACGCCAGAAATTTCTTTCTTGAATGTAAAAAAGATTTTGACTGCATTGGATATTATTGCCTCTTTTAATCTTTGGTTTTGTGATTCTACAATATTTGTTGAGGGCCAAAACTTCACGTGGCTGTTTGGTTGAGGAAAAATGTGATAATGATCTGAAATGTAGAAACAGCTATTCCATTCCAATAACATACTCTGCCAAAAAAATTTTACATGTAGAAGACAATTGGATATATCTTTTTCTCCCTTCCAAACGTGCCCTTGAGTGAGTAAAAGATCAAACTAATTTCCAAAAGAACAAAAAATGATTTGTAAACTACGTTGGCCACTGCAAACTTTTCTTGAAGGCTTGTTATTGATGGGTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTTTCAAGAATCAATTTGTGCAATAAGTTGATCCAAGACAGTAGGATCTGCAAGTGTTGAGGTATCTCCAATCTCATCCAACTGCTTGGATGCAATTTTTCTCAAAACTCGTCTCAATATCTTTCCACTCCTTGTTTTTGGCAGCTCATTTGCCCAATGTATTTTATCAGGTGCTGCAAATGCTCCAATCTGAAAGTGTAATAGCAAAATATTTCATTCTTAATTATTCCTTTACAATCCTCTTAGGTCTTAACTTCATATTTCTGAACATGATGACTAACCTGTGTTCGAATTGTTTGTATTAGGCTTTCTCGAAGCTCTTCACTTTGAGGAACTCCCTCAACTAGTGTAACGAATGCATGAATACTCTGCCCTTTAACCTGAAGACAAGAGAAAGGTTAAATTATAAAATTCAGTCCCTAAACTTTTGATTTACATTTCTATGGAGCTCTTGTTTTAAGAGTGTCTATCGAACCAACGCTGGTTGATTCGATACGACATAATAGAGATCACAGTGGCATAAGGAAGTCGACATTTGAACAAAATAGAAATTGTTTTGTGACCTCATGCTCAATGCCAATCACTGCAGCTTCTGCACACTGAGGGTGTGAAACTAACGCAGATTCCACTTCTGCTGTCCCAATTCGATGCCCACTGCATAATATATAAAGTTTTTAGACCATATTTTATTTGTCTTAACTCCTAAATTTTTAGTTTTTTTGTCGATAAATTCAAATATATCCCGAAGAGAAGTTAAGAACTAAACAAAAGATTAAGTTCAAGGACTAAAAATAAAATAAACTCGAAATGATAGAGATTTATAAGATTTTAACCTGGCATGAAAAGTAGTTTCTTTTTCATTATTATTTGATTCTATGATCAATCTTAACATGCATTAGTGGATGTAAAAAACGCAAA

mRNA sequence

TAAAAGGAAAAGTCATTTTTCTTCAATCCACTTTTCAAAGTTTAAACCTTCTATTAACCTTCTATTACAACGACCGCCCACTTTTCTACCGGTTCCAATTTGAGTTCGGAGAAGGATGGGTCAAGCTGAAAGCGTCGCCGCCGTATCGTCTCCGAACGATCTACCTCAAAGCCGGAATTCATCTGCAAGTCCCGTCTCCGGTCCTCCCTCCATGGAGTCTCTAATTGCAGAAGCTGCAGCTTATGGTAATGAAACAAATGAGTCTCTTGATGCCAAAGCTAACAGAGCGTTAGAGTGCCCCTGCATAGCTGACTTGCGTAAAGGTCCATGCGGGGTCCAGTTTTCTGATGCTTTTCTTTGCTTCTTCAAGAGTACTGCAGAGGAAAAGGGATCGGACTGTGTGCATCCTTTTGTGGCTTTGCAGAGCTGCATAAAAGCAAACCCAAATGCATTCTCGAAGGATATCTTGGACGAAGATGAAGATGAAGAAGAAAAAGAAAGGGAAAAAGTAAAGGCTGAAGAGCCAACTCAAGATTACAGAGTCGTTCCTCCTTCATGGTCTAGAGAACCTCAAACTCCCAAGTCCAAGCTGTAACTCATATCATCAGCTTCCATTTTGTCTATCCTGGTTTCAAGAATCAATTTGTGCAATAAGTTGATCCAAGACAGTAGGATCTGCAAGTGTTGAGGCTTTCTCGAAGCTCTTCACTTTGAGGAACTCCCTCAACTAGTGTAACGAATGCATGAATACTCTGCCCTTTAACCTGAAGACAAGAGAAAGGTTAAATTATAAAATTCAGTCCCTAAACTTTTGATTTACATTTCTATGGAGCTCTTGTTTTAAGAGTGTCTATCGAACCAACGCTGGTTGATTCGATACGACATAATAGAGATCACAGTGGCATAAGGAAGTCGACATTTGAACAAAATAGAAATTGTTTTGTGACCTCATGCTCAATGCCAATCACTGCAGCTTCTGCACACTGAGGGTGTGAAACTAACGCAGATTCCACTTCTGCTGTCCCAATTCGATGCCCACTGCATAATATATAAAGTTTTTAGACCATATTTTATTTGTCTTAACTCCTAAATTTTTAGTTTTTTTGTCGATAAATTCAAATATATCCCGAAGAGAAGTTAAGAACTAAACAAAAGATTAAGTTCAAGGACTAAAAATAAAATAAACTCGAAATGATAGAGATTTATAAGATTTTAACCTGGCATGAAAAGTAGTTTCTTTTTCATTATTATTTGATTCTATGATCAATCTTAACATGCATTAGTGGATGTAAAAAACGCAAA

Coding sequence (CDS)

ATGGGTCAAGCTGAAAGCGTCGCCGCCGTATCGTCTCCGAACGATCTACCTCAAAGCCGGAATTCATCTGCAAGTCCCGTCTCCGGTCCTCCCTCCATGGAGTCTCTAATTGCAGAAGCTGCAGCTTATGGTAATGAAACAAATGAGTCTCTTGATGCCAAAGCTAACAGAGCGTTAGAGTGCCCCTGCATAGCTGACTTGCGTAAAGGTCCATGCGGGGTCCAGTTTTCTGATGCTTTTCTTTGCTTCTTCAAGAGTACTGCAGAGGAAAAGGGATCGGACTGTGTGCATCCTTTTGTGGCTTTGCAGAGCTGCATAAAAGCAAACCCAAATGCATTCTCGAAGGATATCTTGGACGAAGATGAAGATGAAGAAGAAAAAGAAAGGGAAAAAGTAAAGGCTGAAGAGCCAACTCAAGATTACAGAGTCGTTCCTCCTTCATGGTCTAGAGAACCTCAAACTCCCAAGTCCAAGCTGTAA

Protein sequence

MGQAESVAAVSSPNDLPQSRNSSASPVSGPPSMESLIAEAAAYGNETNESLDAKANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKDILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL
Homology
[Close]
BLAST of Clc01G08340 vs. NCBI nr
Match: XP_038875961.1 (mitochondrial intermembrane space import and assembly protein 40 homolog [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 7.8e-74
Identity = 151/164 (92.07%), Postives = 154/164 (93.90%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPVSG-----PPSMESLIAEAAAYGNETNESLDAKA 60
           MGQ ESVAAVSSPNDLPQSRNSSA+PVS      PPSMESLIAEAAAYGNETNESLDAKA
Sbjct: 1   MGQVESVAAVSSPNDLPQSRNSSANPVSSGSSPRPPSMESLIAEAAAYGNETNESLDAKA 60

Query: 61  NRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSK 120
           NRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSK
Sbjct: 61  NRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSK 120

Query: 121 DILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           DILD DEDEEEKEREK KAE+PTQDYRV+PPSWSREPQ PKSKL
Sbjct: 121 DILD-DEDEEEKEREKEKAEKPTQDYRVIPPSWSREPQIPKSKL 163

[Close]
BLAST of Clc01G08340 vs. NCBI nr
Match: XP_004150196.1 (mitochondrial intermembrane space import and assembly protein 40 homolog [Cucumis sativus] >XP_031742113.1 mitochondrial intermembrane space import and assembly protein 40 homolog [Cucumis sativus] >XP_031742114.1 mitochondrial intermembrane space import and assembly protein 40 homolog [Cucumis sativus] >KAE8648380.1 hypothetical protein Csa_023310 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 145/159 (91.19%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPVSGPPSMESLIAEAAAYGNETNESLDAKANRALE 60
           MGQAESVAAVS PNDLP S N SASPVSGPPSMESLIAEA AYGNETNESLDAKANRALE
Sbjct: 1   MGQAESVAAVSPPNDLPPSLNQSASPVSGPPSMESLIAEAEAYGNETNESLDAKANRALE 60

Query: 61  CPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKDILDE 120
           CPCIADLRKG CG+QFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD+LDE
Sbjct: 61  CPCIADLRKGSCGIQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKDVLDE 120

Query: 121 DEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           DE+E+E E+EKVK EEPTQDYRVVPPSWSREPQ PKSKL
Sbjct: 121 DEEEKEMEKEKVKTEEPTQDYRVVPPSWSREPQIPKSKL 159

[Close]
BLAST of Clc01G08340 vs. NCBI nr
Match: XP_022990891.1 (mitochondrial intermembrane space import and assembly protein 40 homolog [Cucurbita maxima])

HSP 1 Score: 278.5 bits (711), Expect = 3.6e-71
Identity = 143/163 (87.73%), Postives = 150/163 (92.02%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPVSG----PPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQ ESVAA SS NDLPQSRN S SPVSG     PSMESLIAEAAAYGNE NESL+AKAN
Sbjct: 1   MGQTESVAAASSTNDLPQSRNPSPSPVSGCSSESPSMESLIAEAAAYGNEANESLEAKAN 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD
Sbjct: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120

Query: 121 ILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           +LDE+E+EEE+EREK KAEEPTQDYR++PPSWSREPQ PKSKL
Sbjct: 121 VLDEEEEEEEEEREKQKAEEPTQDYRIIPPSWSREPQAPKSKL 163

[Close]
BLAST of Clc01G08340 vs. NCBI nr
Match: XP_023529662.1 (mitochondrial intermembrane space import and assembly protein 40 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 143/164 (87.20%), Postives = 151/164 (92.07%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPVSG----PPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQ ESVAA SSPNDLPQSRN S SPVSG     PSM+SLIAEAAAYGNE NESL+AKAN
Sbjct: 1   MGQTESVAAASSPNDLPQSRNPSPSPVSGSSSESPSMDSLIAEAAAYGNEANESLEAKAN 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD
Sbjct: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120

Query: 121 ILDEDEDE-EEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           +LDE+E+E EE+EREK KAEEPTQDYR++PPSWSREPQ PKSKL
Sbjct: 121 VLDEEEEEAEEEEREKQKAEEPTQDYRIIPPSWSREPQAPKSKL 164

[Close]
BLAST of Clc01G08340 vs. NCBI nr
Match: XP_008465292.1 (PREDICTED: mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 5.3e-70
Identity = 144/163 (88.34%), Postives = 148/163 (90.80%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPV----SGPPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQAESVAAVS PNDLP S N SASPV    SGPPSMESLIAEA AYGNETNESLDAKAN
Sbjct: 1   MGQAESVAAVSPPNDLPPSPNPSASPVSGSSSGPPSMESLIAEAEAYGNETNESLDAKAN 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD
Sbjct: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120

Query: 121 ILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           ILD+DE+    E+EKVK EEPTQDYRV+PPSWSREPQ PKSKL
Sbjct: 121 ILDDDEE----EKEKVKTEEPTQDYRVIPPSWSREPQIPKSKL 159

[Close]
BLAST of Clc01G08340 vs. ExPASy Swiss-Prot
Match: Q8GYJ4 (Mitochondrial intermembrane space import and assembly protein 40 homolog OS=Arabidopsis thaliana OX=3702 GN=MIA40 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.1e-41
Identity = 96/167 (57.49%), Postives = 121/167 (72.46%), Query Frame = 0 

Query: 1   MGQAE----SVAAVSSPNDLPQSRNSSA-SPVSGPPSMESLIAEAAAYGNE--TNESLDA 60
           MGQA+    S+   ++ N  P S NS   S  +  PSM+SL+AEAAAYG +   NESL+A
Sbjct: 1   MGQAQSDENSIPTTTTTNTPPPSANSPRDSEDTSSPSMDSLLAEAAAYGEDDNENESLEA 60

Query: 61  KANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAF 120
           KA RAL+CPCIADLR G CG QFS+AFLCF KSTAEEKGSDCV+PFVALQSCI ANP+AF
Sbjct: 61  KAQRALDCPCIADLRNGSCGSQFSEAFLCFLKSTAEEKGSDCVNPFVALQSCINANPDAF 120

Query: 121 SKDILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSRE-PQTPKSKL 160
           SK +       +EKE EK + + P QD+R++PP W+++ P++  SKL
Sbjct: 121 SKSVTG-----DEKETEKKEEQPPVQDHRIIPPLWAKDPPRSGNSKL 162

[Close]
BLAST of Clc01G08340 vs. ExPASy Swiss-Prot
Match: Q7XKI7 (Mitochondrial intermembrane space import and assembly protein 40 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=MIA40 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 5.7e-35
Identity = 80/155 (51.61%), Postives = 104/155 (67.10%), Query Frame = 0 

Query: 1   MGQAESVAAVS----SPNDLPQSRNSSASPVSGPPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQ  S  A +    SP  +  + +SS SP   P S+E+L AEA ++  + NES+D K  
Sbjct: 1   MGQGLSQPAQAVEEPSPPAVEAAPSSSPSPAPAPSSLEALAAEAMSFDEDGNESIDVKVQ 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           +AL+CPC+A+L+ GPCG QF DAF CF KST EEKGSDCV PF+ALQ CIK NP AFSK+
Sbjct: 61  KALDCPCVAELKNGPCGSQFVDAFSCFLKSTEEEKGSDCVKPFIALQDCIKINPEAFSKE 120

Query: 121 ILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSRE 152
           IL+E+E++EE E+  +K         V  P+WSRE
Sbjct: 121 ILEEEENDEEAEKSNLK---------VRAPAWSRE 146

[Close]
BLAST of Clc01G08340 vs. ExPASy Swiss-Prot
Match: Q8N4Q1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Homo sapiens OX=9606 GN=CHCHD4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 0 

Query: 31  PSMESLIAEAAAYGNETNESLDAKANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEE 90
           PS   L+A+      E +  +    N    CPC+  +  GPCG QF  AF CF  ST E 
Sbjct: 23  PSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTEEI 82

Query: 91  KGSDCVHPFVALQSCIKANPNAFSKDILDEDEDEEEKEREKVKAEE 137
           KGSDCV  F A+Q C++  P+ + +    EDEDEEE EREK  AE+
Sbjct: 83  KGSDCVDQFRAMQECMQKYPDLYPQ----EDEDEEE-EREKKPAEQ 123

[Close]
BLAST of Clc01G08340 vs. ExPASy Swiss-Prot
Match: Q4WGL2 (Mitochondrial intermembrane space import and assembly protein 40 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=mia40 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 0 

Query: 3   QAESVAAVSSPNDLP---QSRNSSASPVSGPPSMESLIAEAAAYGNETNESLDAKANRAL 62
           QAES  AVS P+  P   ++ ++S + +  P  +E    + AA+  ET E          
Sbjct: 99  QAES-KAVSQPDAQPTQHEALSASEAALKSPQELEDEAGQEAAFNPETGEI-------NW 158

Query: 63  ECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKDILD 122
           +CPC+  +  GPCG +F  AF CF  ST E KG DC+  F  +Q C +  P+ +  ++ D
Sbjct: 159 DCPCLGGMAHGPCGEEFKAAFSCFVYSTEEPKGMDCIDKFKGMQECFRRYPDVYGAELED 213

[Close]
BLAST of Clc01G08340 vs. ExPASy Swiss-Prot
Match: Q6PBC3 (Mitochondrial intermembrane space import and assembly protein 40 OS=Xenopus tropicalis OX=8364 GN=chchd4 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 0 

Query: 31  PSMESLIAEAAAYGNETNESLDAKANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEE 90
           PS   LIA+      E +  +    +    CPC+  +  GPCG QF  AF CF  S  E 
Sbjct: 23  PSSAELIADDPNDPYEDHGLILPNGDINWNCPCLGGMASGPCGEQFKSAFSCFHYSQEEI 82

Query: 91  KGSDCVHPFVALQSCIKANPNAFSKDILDEDEDEEEKEREKVKAE 136
           KGSDC+  F A+Q C++  P+ + +   ++DEDE EKE++  +AE
Sbjct: 83  KGSDCLDQFRAMQECMQKYPDIYPQ---EDDEDEAEKEKQNKEAE 124

[Close]
BLAST of Clc01G08340 vs. ExPASy TrEMBL
Match: A0A6J1JP76 (mitochondrial intermembrane space import and assembly protein 40 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487644 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.8e-71
Identity = 143/163 (87.73%), Postives = 150/163 (92.02%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPVSG----PPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQ ESVAA SS NDLPQSRN S SPVSG     PSMESLIAEAAAYGNE NESL+AKAN
Sbjct: 1   MGQTESVAAASSTNDLPQSRNPSPSPVSGCSSESPSMESLIAEAAAYGNEANESLEAKAN 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD
Sbjct: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120

Query: 121 ILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           +LDE+E+EEE+EREK KAEEPTQDYR++PPSWSREPQ PKSKL
Sbjct: 121 VLDEEEEEEEEEREKQKAEEPTQDYRIIPPSWSREPQAPKSKL 163

[Close]
BLAST of Clc01G08340 vs. ExPASy TrEMBL
Match: A0A1S3CNJ8 (mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo OX=3656 GN=LOC103502941 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 144/163 (88.34%), Postives = 148/163 (90.80%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPV----SGPPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQAESVAAVS PNDLP S N SASPV    SGPPSMESLIAEA AYGNETNESLDAKAN
Sbjct: 1   MGQAESVAAVSPPNDLPPSPNPSASPVSGSSSGPPSMESLIAEAEAYGNETNESLDAKAN 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD
Sbjct: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120

Query: 121 ILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           ILD+DE+    E+EKVK EEPTQDYRV+PPSWSREPQ PKSKL
Sbjct: 121 ILDDDEE----EKEKVKTEEPTQDYRVIPPSWSREPQIPKSKL 159

[Close]
BLAST of Clc01G08340 vs. ExPASy TrEMBL
Match: A0A6J1CJ21 (mitochondrial intermembrane space import and assembly protein 40 homolog OS=Momordica charantia OX=3673 GN=LOC111011808 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.7e-69
Identity = 140/163 (85.89%), Postives = 149/163 (91.41%), Query Frame = 0 

Query: 1   MGQAESVAAVSSPNDLPQSRNSSASPVSG----PPSMESLIAEAAAYGNETNESLDAKAN 60
           MGQAESVAA S PNDLPQSRNS+A+PVS     PPSM+SLIAEAAAYGNE NESLDAKAN
Sbjct: 1   MGQAESVAAASPPNDLPQSRNSAATPVSSSSRDPPSMDSLIAEAAAYGNEANESLDAKAN 60

Query: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120
           RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD
Sbjct: 61  RALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSKD 120

Query: 121 ILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           ILDE   EE++E+EK KAEEP +DYR++PPSWSREPQ PKSKL
Sbjct: 121 ILDE---EEKEEKEKEKAEEPAEDYRIIPPSWSREPQIPKSKL 160

[Close]
BLAST of Clc01G08340 vs. ExPASy TrEMBL
Match: A0A6J1H043 (mitochondrial intermembrane space import and assembly protein 40 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458724 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.1e-68
Identity = 141/164 (85.98%), Postives = 148/164 (90.24%), Query Frame = 0 

Query: 1   MGQAESV-AAVSSPNDLPQSRNSSASPVSG----PPSMESLIAEAAAYGNETNESLDAKA 60
           MGQ ESV AA SSPNDLPQSRN S SPVSG     PSMESLIAEAAAYGNE NESL+AKA
Sbjct: 1   MGQTESVAAAASSPNDLPQSRNPSPSPVSGSSSESPSMESLIAEAAAYGNEANESLEAKA 60

Query: 61  NRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSK 120
           NRALECPCIADLRKGPCGVQFSDAF CFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSK
Sbjct: 61  NRALECPCIADLRKGPCGVQFSDAFFCFFKSTAEEKGSDCVHPFVALQSCIKANPNAFSK 120

Query: 121 DILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           D+LDE+E+EE  EREK KAEEPT+DYR++PPSWSREPQ PKSKL
Sbjct: 121 DVLDEEEEEE--EREKQKAEEPTKDYRIIPPSWSREPQAPKSKL 162

[Close]
BLAST of Clc01G08340 vs. ExPASy TrEMBL
Match: A0A5A7VG35 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00250 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.0e-52
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 49  ESLDAKANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKA 108
           +SLDAKANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKA
Sbjct: 32  QSLDAKANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKA 91

Query: 109 NPNAFSKDILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSREPQTPKSKL 160
           NPNAFSKDILD+DE+E+E E+EKVK EEPTQDYRV+PPSWSREPQ PKSKL
Sbjct: 92  NPNAFSKDILDDDEEEKEMEKEKVKTEEPTQDYRVIPPSWSREPQIPKSKL 142

[Close]
BLAST of Clc01G08340 vs. TAIR 10
Match: AT5G23395.1 (Cox19-like CHCH family protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-42
Identity = 96/167 (57.49%), Postives = 121/167 (72.46%), Query Frame = 0 

Query: 1   MGQAE----SVAAVSSPNDLPQSRNSSA-SPVSGPPSMESLIAEAAAYGNE--TNESLDA 60
           MGQA+    S+   ++ N  P S NS   S  +  PSM+SL+AEAAAYG +   NESL+A
Sbjct: 1   MGQAQSDENSIPTTTTTNTPPPSANSPRDSEDTSSPSMDSLLAEAAAYGEDDNENESLEA 60

Query: 61  KANRALECPCIADLRKGPCGVQFSDAFLCFFKSTAEEKGSDCVHPFVALQSCIKANPNAF 120
           KA RAL+CPCIADLR G CG QFS+AFLCF KSTAEEKGSDCV+PFVALQSCI ANP+AF
Sbjct: 61  KAQRALDCPCIADLRNGSCGSQFSEAFLCFLKSTAEEKGSDCVNPFVALQSCINANPDAF 120

Query: 121 SKDILDEDEDEEEKEREKVKAEEPTQDYRVVPPSWSRE-PQTPKSKL 160
           SK +       +EKE EK + + P QD+R++PP W+++ P++  SKL
Sbjct: 121 SKSVTG-----DEKETEKKEEQPPVQDHRIIPPLWAKDPPRSGNSKL 162

The following BLAST results are available for this feature:
BLAST of Clc01G08340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875961.17.8e-7492.07mitochondrial intermembrane space import and assembly protein 40 homolog [Beninc... [more]
XP_004150196.11.7e-7391.19mitochondrial intermembrane space import and assembly protein 40 homolog [Cucumi... [more]
XP_022990891.13.6e-7187.73mitochondrial intermembrane space import and assembly protein 40 homolog [Cucurb... [more]
XP_023529662.12.4e-7087.20mitochondrial intermembrane space import and assembly protein 40 homolog [Cucurb... [more]
XP_008465292.15.3e-7088.34PREDICTED: mitochondrial intermembrane space import and assembly protein 40 [Cuc... [more]
BLAST of Clc01G08340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GYJ43.1e-4157.49Mitochondrial intermembrane space import and assembly protein 40 homolog OS=Arab... [more]
Q7XKI75.7e-3551.61Mitochondrial intermembrane space import and assembly protein 40 homolog OS=Oryz... [more]
Q8N4Q11.6e-1343.40Mitochondrial intermembrane space import and assembly protein 40 OS=Homo sapiens... [more]
Q4WGL21.0e-1234.96Mitochondrial intermembrane space import and assembly protein 40 OS=Neosartorya ... [more]
Q6PBC35.2e-1238.10Mitochondrial intermembrane space import and assembly protein 40 OS=Xenopus trop... [more]
BLAST of Clc01G08340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JP761.8e-7187.73mitochondrial intermembrane space import and assembly protein 40 homolog OS=Cucu... [more]
A0A1S3CNJ82.5e-7088.34mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
A0A6J1CJ213.7e-6985.89mitochondrial intermembrane space import and assembly protein 40 homolog OS=Momo... [more]
A0A6J1H0434.1e-6885.98mitochondrial intermembrane space import and assembly protein 40 homolog OS=Cucu... [more]
A0A5A7VG357.0e-5291.89Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
BLAST of Clc01G08340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G23395.12.2e-4257.49Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..135
NoneNo IPR availableGENE3D1.10.287.2900coord: 41..118
e-value: 4.4E-24
score: 86.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR21622:SF0AU015836 PROTEIN-RELATEDcoord: 13..153
IPR039289Mitochondrial intermembrane space import and assembly protein 40PANTHERPTHR21622COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4coord: 13..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G08340.1Clc01G08340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045041 protein import into mitochondrial intermembrane space
biological_process GO:0022417 protein maturation by protein folding
biological_process GO:0006625 protein targeting to peroxisome
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0005777 peroxisome
molecular_function GO:0015035 protein-disulfide reductase activity