Clc01G07750 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCACTTGCAACTTCCTATCCTTATAGATATGAATCCAAATCTTCAAAGCAGGAGGTTTTAAATGGTGGGTTTAATATATATTCTTCATTAAATATTATTTAAATGTATATAATTTGATTTTATATTAATTGTAGGAAATTAGCTTTGTATCCGAATGGAGATGTCACAACATCAACATCAAATGACGAATATGATCGTCATATATCCCTTTATTTGGTATCAGCTGAAGATGACATTTCATCATATGGTTTAGAGATTAATGTTATGATTACATTTCTTGTTTATGGTAATCTCAAAGACAAGTATTGGAGCATACAAGGTAATATATTCTCAAATTGATTTATTATAGCTTTAGTTTCGAATTTTGACTCGACGGTAATTGACATGCAAATAGAAAGGTAAAACGCTTTGTAATGAAGAAAGAGTGGGGATTTAATAAGTTGATTTCACTATTCAATTTATATGGAGCTTCAAATGGATTTTTGGTTAATGATTGTTGTGCATTTTGAGTTGACATTTTTGTTATGGACTTTAATAATAAGAATGATGGGAAGAAAGGGGAGATTCTTTCCTTGATCAAACAACCAACAAATTACTATCATTCATGGAAATTCACCAACTTTTCTCTACTAAATAAGGATCATTACGAATCTCAACCTTTTACCGTCCAGGGCTACAATTGGTATGTAAAAAACTTTTTATTATTATTATTATTATACAATTATACAATTATGCAGCTAAATTATAACAAATATCTCTCAATTTTGTTATTTGTTTCAATAATATTCTCTTTACTACTTTTAAAATTGTAATATTACTTCTCAACTTTCTTTTGGAATTTCAAAGATTTGGAATTGTGTTGTGATAATTAAAATTATGTTGTGATCTAAATTTTCATAGTTTCATATCTCAATTTTTGTGCAAAATTATTCTAAAGTATTTCTATTCTAAGGGTATTTTAAAAATGTTTATGAAAGTTGCAACTTTTGAAAGTCATTAGGGTATTTTTTAAACAAATGACGAAGCTAAGAGACTTTTTTTTAAATTTTTATTTTAATTATAGCAAATATCATTTAGCTTTGCCATTTGTTCAAAAAAATATCTATACTTCTAAAATGACAATATTGCCCATCAACTTTCTTTTGGAATTTCGAGATAATCTAACATGATGTCTTTGATTTAAATTTTCCTTATAGGGTCATTCTTACGCAATTTTATTATTTCATATCTCAATTTTTGTGCAAAATTCTAAAGATTTATTGTTCTAAGGATATTTTTGAAATATTTATGAAAGTTAAAGAGTAATATTACAATTTTTGAAAGTATCGTGGTACATTTTAAACAAATGACAAAATTCAAAAGACATTTTTTTTATATAATTTAACCTATATATATATTTAGTGTAATCTATATATATATATATGATGAATTCCTTTAGGAAAATACTCCTATATCCAAGAGGATTTTGCTGCAAAAAGGCAGGTGGATGTTTGTCCTTGTACCTCCACCTTCAAAGTTTCAGGGAGCTTCCTCAAAATTTTCAAGTTTATGTTGAATATGAGATGGCTGTCTTGAGCCAACTTGGAGTTGAAACAAAGAGAAAAACAAGTAATTAATTTTTACCTTAATTTATGCAAACTAAATCATTATATATATATATATATATATATTATTATTGTTTTTGTTTTGTTGCAGATAGATGTGGGTATGGTGTTAAACAATGGAGCTCGGGATTCTCGGAGTTCATGACATTGAATGATCTGATGAAACCAACCAAACACTTTCTTCATAATGATACTCTCAGAGTTGAAGTCAAAATTAATAAGATATCCGCCTTGGAAACACTAGTTTATTAG ATGGCTGCACTTGCAACTTCCTATCCTTATAGATATGAATCCAAATCTTCAAAGCAGGAGGTTTTAAATGGTGGGAAATTAGCTTTGTATCCGAATGGAGATGTCACAACATCAACATCAAATGACGAATATGATCGTCATATATCCCTTTATTTGAATGATGGGAAGAAAGGGGAGATTCTTTCCTTGATCAAACAACCAACAAATTACTATCATTCATGGAAATTCACCAACTTTTCTCTACTAAATAAGGATCATTACGAATCTCAACCTTTTACCGTCCAGGGCTACAATTGGAAAATACTCCTATATCCAAGAGGATTTTGCTGCAAAAAGGCAGGTGGATGTTTGTCCTTGTACCTCCACCTTCAAAGTTTCAGGGAGCTTCCTCAAAATTTTCAAGTTTATGTTGAATATGAGATGGCTGTCTTGAGCCAACTTGGAGTTGAAACAAAGAGAAAAACAAATAGATGTGGGTATGGTGTTAAACAATGGAGCTCGGGATTCTCGGAGTTCATGACATTGAATGATCTGATGAAACCAACCAAACACTTTCTTCATAATGATACTCTCAGAGTTGAAGTCAAAATTAATAAGATATCCGCCTTGGAAACACTAGTTTATTAG ATGGCTGCACTTGCAACTTCCTATCCTTATAGATATGAATCCAAATCTTCAAAGCAGGAGGTTTTAAATGGTGGGAAATTAGCTTTGTATCCGAATGGAGATGTCACAACATCAACATCAAATGACGAATATGATCGTCATATATCCCTTTATTTGAATGATGGGAAGAAAGGGGAGATTCTTTCCTTGATCAAACAACCAACAAATTACTATCATTCATGGAAATTCACCAACTTTTCTCTACTAAATAAGGATCATTACGAATCTCAACCTTTTACCGTCCAGGGCTACAATTGGAAAATACTCCTATATCCAAGAGGATTTTGCTGCAAAAAGGCAGGTGGATGTTTGTCCTTGTACCTCCACCTTCAAAGTTTCAGGGAGCTTCCTCAAAATTTTCAAGTTTATGTTGAATATGAGATGGCTGTCTTGAGCCAACTTGGAGTTGAAACAAAGAGAAAAACAAATAGATGTGGGTATGGTGTTAAACAATGGAGCTCGGGATTCTCGGAGTTCATGACATTGAATGATCTGATGAAACCAACCAAACACTTTCTTCATAATGATACTCTCAGAGTTGAAGTCAAAATTAATAAGATATCCGCCTTGGAAACACTAGTTTATTAG MAALATSYPYRYESKSSKQEVLNGGKLALYPNGDVTTSTSNDEYDRHISLYLNDGKKGEILSLIKQPTNYYHSWKFTNFSLLNKDHYESQPFTVQGYNWKILLYPRGFCCKKAGGCLSLYLHLQSFRELPQNFQVYVEYEMAVLSQLGVETKRKTNRCGYGVKQWSSGFSEFMTLNDLMKPTKHFLHNDTLRVEVKINKISALETLVY Homology
BLAST of Clc01G07750 vs. NCBI nr
Match: XP_038875772.1 (uncharacterized protein LOC120068142 [Benincasa hispida]) HSP 1 Score: 152.1 bits (383), Expect = 5.1e-33 Identity = 83/160 (51.88%), Postives = 100/160 (62.50%), Query Frame = 0
BLAST of Clc01G07750 vs. NCBI nr
Match: XP_038874970.1 (uncharacterized protein LOC120067490 [Benincasa hispida]) HSP 1 Score: 140.2 bits (352), Expect = 2.0e-29 Identity = 81/153 (52.94%), Postives = 100/153 (65.36%), Query Frame = 0
BLAST of Clc01G07750 vs. NCBI nr
Match: XP_022146380.1 (probable inactive serine/threonine-protein kinase fnkC [Momordica charantia]) HSP 1 Score: 134.8 bits (338), Expect = 8.5e-28 Identity = 97/272 (35.66%), Postives = 130/272 (47.79%), Query Frame = 0
BLAST of Clc01G07750 vs. NCBI nr
Match: XP_031742213.1 (MATH domain and coiled-coil domain-containing protein At3g58340 [Cucumis sativus]) HSP 1 Score: 132.1 bits (331), Expect = 5.5e-27 Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 0
BLAST of Clc01G07750 vs. NCBI nr
Match: KAE8648447.1 (hypothetical protein Csa_008888 [Cucumis sativus]) HSP 1 Score: 132.1 bits (331), Expect = 5.5e-27 Identity = 76/160 (47.50%), Postives = 99/160 (61.88%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy Swiss-Prot
Match: Q9FPT1 (Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2) HSP 1 Score: 79.3 bits (194), Expect = 5.6e-14 Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy Swiss-Prot
Match: Q84WU2 (Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 6.1e-13 Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy Swiss-Prot
Match: Q9M2H9 (MATH domain and coiled-coil domain-containing protein At3g58370 OS=Arabidopsis thaliana OX=3702 GN=At3g58370 PE=4 SV=3) HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11 Identity = 39/135 (28.89%), Postives = 68/135 (50.37%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy Swiss-Prot
Match: Q9C870 (MATH domain and coiled-coil domain-containing protein At1g31390 OS=Arabidopsis thaliana OX=3702 GN=At1g31390 PE=4 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 8.3e-10 Identity = 34/132 (25.76%), Postives = 67/132 (50.76%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy Swiss-Prot
Match: Q9M2J5 (MATH domain and coiled-coil domain-containing protein At3g58210 OS=Arabidopsis thaliana OX=3702 GN=At3g58210 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.5e-08 Identity = 38/135 (28.15%), Postives = 62/135 (45.93%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy TrEMBL
Match: A0A6J1CX47 (probable inactive serine/threonine-protein kinase fnkC OS=Momordica charantia OX=3673 GN=LOC111015608 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 4.1e-28 Identity = 97/272 (35.66%), Postives = 130/272 (47.79%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy TrEMBL
Match: A0A6J1CXZ0 (ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=LOC111015607 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 3.1e-23 Identity = 89/242 (36.78%), Postives = 120/242 (49.59%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy TrEMBL
Match: A0A1S3CQ20 (uncharacterized protein LOC103503506 OS=Cucumis melo OX=3656 GN=LOC103503506 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22 Identity = 74/157 (47.13%), Postives = 97/157 (61.78%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy TrEMBL
Match: A9PEN0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G103200 PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20 Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 0
BLAST of Clc01G07750 vs. ExPASy TrEMBL
Match: A0A6J1CYF6 (uncharacterized protein LOC111015611 OS=Momordica charantia OX=3673 GN=LOC111015611 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18 Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 0
BLAST of Clc01G07750 vs. TAIR 10
Match: AT3G46190.1 (TRAF-like family protein ) HSP 1 Score: 80.5 bits (197), Expect = 1.8e-15 Identity = 54/159 (33.96%), Postives = 77/159 (48.43%), Query Frame = 0
BLAST of Clc01G07750 vs. TAIR 10
Match: AT5G06600.1 (ubiquitin-specific protease 12 ) HSP 1 Score: 79.3 bits (194), Expect = 3.9e-15 Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 0
BLAST of Clc01G07750 vs. TAIR 10
Match: AT5G06600.2 (ubiquitin-specific protease 12 ) HSP 1 Score: 79.3 bits (194), Expect = 3.9e-15 Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 0
BLAST of Clc01G07750 vs. TAIR 10
Match: AT5G06600.3 (ubiquitin-specific protease 12 ) HSP 1 Score: 79.3 bits (194), Expect = 3.9e-15 Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 0
BLAST of Clc01G07750 vs. TAIR 10
Match: AT3G11910.1 (ubiquitin-specific protease 13 ) HSP 1 Score: 75.9 bits (185), Expect = 4.4e-14 Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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