Clc01G07600 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTAAAACATGATTTAAAGAGATGAATTAATTTAGTAGTAGAAAATCAAACATGTAATTATATGAATTGGGCTCGATTCGGTGGGATTCTTCATCAGAGCTGCATAAAGCATTGTAATGGAGAAAGTCGAAAGAGGCAAGAAAAAAACTTGCAGGGAAGTGACTTTGTAATATCATAATCCCTTTTTGGCCTTTTCTTTTCGGTGAAATCTTGAAGTGTTGGAACTGGACGGCAAGCGAGAATGGAGGATGAATCTGCGCGAGCAATTAGGCTTATGAATTTCGTCTCTGAGGAGCAGGTTTTTACTCTTCCCCTCCTTTCCTTTGATTAATTTCATTTTAGATTTTGGATTTCCTTTTTCAAGTCAATGCAAACATGTTGATTTTTGCAGTTGGACGAAGCCAAGAAAACAAGGGGCGAACGAGTTGAGGATGGCACTGCTCAAAGAGACAGACCCCTCTTCGAGGTTCCTCAACGTTTATTCACTTTGACACCCGAATTACTTTCTTTTAGCAGAATGAAAAGGAAAAATTTGTTTTCTTAGATGGGGTAATGAAACATTTAGGTTTTTGGAAGAACCTCCTCACCTTCGGTGTAAACTCATGTCATTGAATATATCCATTATGTACACTGAGTTACAAAAGCATATGAGTTGACCTATTGCAGCTAGCAACTGGTGGGAGATCTTACCGAAAAACATGTCAGCAGGCTTGAGAGGCCTTTCTTATAAAACTTAGGTTTTTGGCTTGAGAGGCTTGGAGTGTCCCTTTGACAATGGGAACTTTGCATTTCATTGTTACTTGATACCCAAACAAATCGATTAATTAAGAGAAGTAACATTAAGTTGTTGAGCTAGAATTATGGATCACTGATAGTTGGTTGGGTTGTTTAACTAAGAGAAGTCCATTTACAAATTTGGATTGGAAGTATTTTCTAGTTTATACAGATTGACATTGAGTCTTATGTCATTATTCTTTGTGAATGGATAGTTTGCTGGTTTCACTTTCTCTTCTATGATGTAAACGTTTAAATGAACTAATGTTATCACGTAATAATTTTTTTCTTGACTTATTTATAACTATATTTTTAATATTAATACTTCAGTCGTTTTTGGTGGCCTAAATCTTTGTAAGGCCTATTTTGTAATCTTTCATCCTTCTCAATGAATGTAGTAATGTACTCTGTTTATCAGCATTTGAATGCATAGAATTAAGCATTTTTTGTTGTTAACTATGTTTCTCTTTATGTTCACAGATTTTAAAGGAAAATAAAGACAAGCGTGACGCTGAGTTTAATGAACGGTTCAAGCACAGTGAGTGCTGAAGTGTAATATCAGTCTTGTTCTTGAGAAGTCATTTAATTGTTATTATTATTTTTAATGAAAATACTAGACTTTCATTGAGGAAAAGGATGAAAGAGTACACGATCACACCAAAAGTAACAAGCCCACAAAAAAGGAGCGAACTACAAGAAGTGGCTCCAGCCTAGTAAAATGAGACCTAGTGAGTAATTACAAAAATGCCTAGACAATAGACCAAACATCGCTGTTGGAATTCTCCCTCCCTTGAAGATTCTATTGTCTCTATAGTCCCACAAACTCCAAAATCTAGCACACTCTGCAACATGCCAAAAAAACAGCAATTTCTCACAAAAAAGTGGATGGAGGAGAAGCTCTCTATTGTCTCCTGCACCCCTAAGAAACCACCTTGAGCAAAATTACAACTTCAGAGGATATGATCAAGGTCCTCAATCATCTTCCTGCAAAGAATACAATATTGGCTCAATCAACAAGGACCCTACACCCGAGATTTGATCCAAGTGCTAGCCCCCCTTCCATATAAAACCTGGCACACAAAGAACTTCACCTTGGGAATTTTTACGTTGCACACCGAGGAGAAAATAGAATCACTAAGCGGGGAGGGATTGTAGAAAGAGTGACAATAAATGTCTTTGGAAGAACAAGGAGTCCAAAGGGCAATCTTCTCCCTCTCAGTTCTAAGGTGAAAATCACACAACAAAGATAAAAGAACCAAGACCGACGTCATCTTTCTATTGGTCAACGAACGACAAAAATCCATAGAAGGAGAAGGTAGAGACTTTGCTAGAGAAAGGATTGATGCCACTGAATGATTCTCGGAAGATAACAACTGGTATAAACAAGGAAACAAGGAGCAGAGAGGTCAATCCCTCAACCACTTATTCCTCCCAAAAATAGGTACCCCCCCCCCCCCCCCCCCCCCACCTTATGAATAGACTAGAAAAAGAAAAGGAAACTTTACCAAGATATCTTTTGAGTTTTTGGAAGTGAAACCACCTGTCAATACATGAGATGTGATCCATTTTCCTTATCAACCCTCTCTCATAAGAAATCCGTCATCAACTTCTCAAGAGCCTTACATCCATGCCATCATGCAAGGATTAATAAAAATTCATGCTTATTGAGCTCTTTTACTGCAGGACCACCAAAGGCTCTGGACGAGGATGAGACAGAATTTCTGGATAAATTGGAAACAGTGAGACTATTTGTTTTACGCTCATTACCCATTAGCATCTTCTTTTCTTTTCTTCTAATTTTACTGTTAATTGACATGCAGTCAAAGAGAGAATATGAAAGGCAAATGGCTGATGCAGAAGAACAAGAGCTCCGCAGTTTTCAGGTAATTATCCTGCTGTTCCAAATCAAGTGAACTTTCTATGTTACTTGGTTTCTTTTTCAAATTTTTGATATATTGTATGCTAGGGTCAAATTTATGACATCACTTGAAAGCATTGTATGCTAATCAACTGTAATTTCATATGTTAGTATGTGTGGGATTATTGAGCATGCTATTGCTACATTATCTCCTTAATAGTAATGGCAGTCTATAATCCTCATTAATGCACTATACTAAATAGCCGGAAAAATGTGCTCCTACGTGTGCTTTGAGTTTGTGCACAGCTGCAGTTGAGGCACCTTGGTAAGTGCATATCTCCTAAATTCCTGATTGAGTGCTGCAAATTTTCAGAAATAAATGTGGGTTAAAATTAAAAGTGAAAAAGTAAAGAGAGAGTAAGATCAGCTTACAGAAAAGATATATATACGTATATATTGGTTTATCTCTTTCTGTTCGTCCTTTCACCTGAAACACCCTTCTCCCTACCAATTGGCAATGGGTATGGAGCAACATGGAAATGAGACTGAAGACAAAGATTTTATGGCCACAAGTCTAATGACAAGGAATATGGAAAGTGGACCGATGCAGTCTTTAGTGTTATGAGTTCTAATTTTAAGTTGTTGCATGGCTTCTGACCCTTTAATCTTGAGAGATCCATACTACTTGATTTTTGTTTGTTAGTAATAGTTAATATTTTGTCTTTTACTTATGTGCTAATTTTGAGCTTTAGAGAATTTTATTATTGATATTTGTATAGTAGTGGCAAACAGTTGAACCATTATCTTTCTCTATACTCTTGATATATTTTACCTCAGGAGATCATCCTTGTGGGATCTGTGCATAGTAGTTATCTCGAGCAGTAGTTTATTAACAAGTACTGAAAAAATGATGGCAGTCCTTCAGTGAGTTTTTGGTCATATAGGAGGATTTCAAGTGAATCAATTTTCCAATTCGAGTGCAAGTACCCCTTGTTATTAGATTAAATACAGTAGCAGTGAGAAACACTGCACTTAGCCTCCTACTGTTGTGTCTGGAGATCTCCTGTGACCCTTTGTACTTTGACATTCGTATATTGTCGATGATAGGCTTGTCTTTTCCCAACAAATTTTAATAACTCATGAAGGCTGCAGAAAAATGGGCAACAAGTTTTTAATCAACTGTCACACTTGTAATTCTGTTTTGGGTTGCCTGTTGTTTTCTTTTCTGCTTAGTGATGTTACTTCTTGTCCACAATGTATATGAGTACTGGGCGCAAGTGCCCACTCTAAATTTCTTCTCAAGCACTGTTTCTTGCTGTTCTTTCAGGCAGCTGTAGCAGCACAGTCTATTTTGTTGAATGAAGTGAGGGAAATAACTCCCCCTGCTCCAGCAGCTCAGGTTGGTTTAGTTCAAATTCTACGCTCATCCAGTAACTTTTGGTGTGAGTGAGTAGCAACATCATGAACAATCAATCAATAATGGTACTAATATGTATTATTACTATTGATTTAGACTGCCTCCAACAGAAAGAACCATATCCATAAAATCTAAATATCAGCTCAAAGAACTCACGGAGATTACAGATTCTTACATTGTTAGGCATTTTATTGGAATGTGAAGTGTGCTAAATGTTGGTGGCTAGCTTGTACACGTGACTGCTATCTAATGTTTTTGTATACTAGGGTCTATGAGTAAATTTATCGGACCGGTCTGTTCTTTTCGGTCAAGATGTGATCAAGCTGCTGTAATGAAGGTTCTGCTAAATTACCACCTAATGTCATCCTCAATTATATGCAGGAAAAACCATCAGTTAGGAGAGAAACTCCGGTCACTCGACCGCCGAGTATGATAATTAGAGTAAAGCCACAAGCAAAGAAAGCTAGGATCGAACCTAGAAGCCCAGAAAAAGCTGGTAGCACAACTGAAATCCCTGATGCCAAAGCAGAGGAGCCTTCAAAATCAGCAAAAACACTTGATACCAATAGTGATAGGCCGCTTGAAGCTGCTATAACAGGACTAGTTTCGTATAGTGATGAAAGTGAAGATGAAGATTAGACAATTAAGTTAGCTATTAGAATTTCCGAAACAATCACCATGTTGTATTTAATTTTTTGTGTTGAGTTTCTGAAATGATGAATCTTTTCCTGTAGCTTGTCAACATTGATTATATATGTACATCTTCTAACCGTTCATTGTTAAAATATTTTAGACAATCCTGAAGGTTAATTTTTTATGAAATATTTAGAGCCTGGTTTTCCATTGTCGC TTTAAAACATGATTTAAAGAGATGAATTAATTTAGTAGTAGAAAATCAAACATGTAATTATATGAATTGGGCTCGATTCGGTGGGATTCTTCATCAGAGCTGCATAAAGCATTGTAATGGAGAAAGTCGAAAGAGGCAAGAAAAAAACTTGCAGGGAAGTGACTTTGTAATATCATAATCCCTTTTTGGCCTTTTCTTTTCGGTGAAATCTTGAAGTGTTGGAACTGGACGGCAAGCGAGAATGGAGGATGAATCTGCGCGAGCAATTAGGCTTATGAATTTCGTCTCTGAGGAGCAGTTGGACGAAGCCAAGAAAACAAGGGGCGAACGAGTTGAGGATGGCACTGCTCAAAGAGACAGACCCCTCTTCGAGATTTTAAAGGAAAATAAAGACAAGCGTGACGCTGAGTTTAATGAACGGTTCAAGCACAGACCACCAAAGGCTCTGGACGAGGATGAGACAGAATTTCTGGATAAATTGGAAACATCAAAGAGAGAATATGAAAGGCAAATGGCTGATGCAGAAGAACAAGAGCTCCGCAGTTTTCAGGCAGCTGTAGCAGCACAGTCTATTTTGTTGAATGAAGTGAGGGAAATAACTCCCCCTGCTCCAGCAGCTCAGGAAAAACCATCAGTTAGGAGAGAAACTCCGGTCACTCGACCGCCGAGTATGATAATTAGAGTAAAGCCACAAGCAAAGAAAGCTAGGATCGAACCTAGAAGCCCAGAAAAAGCTGGTAGCACAACTGAAATCCCTGATGCCAAAGCAGAGGAGCCTTCAAAATCAGCAAAAACACTTGATACCAATAGTGATAGGCCGCTTGAAGCTGCTATAACAGGACTAGTTTCGTATAGTGATGAAAGTGAAGATGAAGATTAGACAATTAAGTTAGCTATTAGAATTTCCGAAACAATCACCATGTTGTATTTAATTTTTTGTGTTGAGTTTCTGAAATGATGAATCTTTTCCTGTAGCTTGTCAACATTGATTATATATGTACATCTTCTAACCGTTCATTGTTAAAATATTTTAGACAATCCTGAAGGTTAATTTTTTATGAAATATTTAGAGCCTGGTTTTCCATTGTCGC ATGGAGGATGAATCTGCGCGAGCAATTAGGCTTATGAATTTCGTCTCTGAGGAGCAGTTGGACGAAGCCAAGAAAACAAGGGGCGAACGAGTTGAGGATGGCACTGCTCAAAGAGACAGACCCCTCTTCGAGATTTTAAAGGAAAATAAAGACAAGCGTGACGCTGAGTTTAATGAACGGTTCAAGCACAGACCACCAAAGGCTCTGGACGAGGATGAGACAGAATTTCTGGATAAATTGGAAACATCAAAGAGAGAATATGAAAGGCAAATGGCTGATGCAGAAGAACAAGAGCTCCGCAGTTTTCAGGCAGCTGTAGCAGCACAGTCTATTTTGTTGAATGAAGTGAGGGAAATAACTCCCCCTGCTCCAGCAGCTCAGGAAAAACCATCAGTTAGGAGAGAAACTCCGGTCACTCGACCGCCGAGTATGATAATTAGAGTAAAGCCACAAGCAAAGAAAGCTAGGATCGAACCTAGAAGCCCAGAAAAAGCTGGTAGCACAACTGAAATCCCTGATGCCAAAGCAGAGGAGCCTTCAAAATCAGCAAAAACACTTGATACCAATAGTGATAGGCCGCTTGAAGCTGCTATAACAGGACTAGTTTCGTATAGTGATGAAAGTGAAGATGAAGATTAG MEDESARAIRLMNFVSEEQLDEAKKTRGERVEDGTAQRDRPLFEILKENKDKRDAEFNERFKHRPPKALDEDETEFLDKLETSKREYERQMADAEEQELRSFQAAVAAQSILLNEVREITPPAPAAQEKPSVRRETPVTRPPSMIIRVKPQAKKARIEPRSPEKAGSTTEIPDAKAEEPSKSAKTLDTNSDRPLEAAITGLVSYSDESEDED Homology
BLAST of Clc01G07600 vs. NCBI nr
Match: XP_008466362.1 (PREDICTED: protein FAM192A [Cucumis melo] >KAA0050273.1 protein FAM192A [Cucumis melo var. makuwa]) HSP 1 Score: 362.5 bits (929), Expect = 2.6e-96 Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Clc01G07600 vs. NCBI nr
Match: TYJ98134.1 (protein FAM192A [Cucumis melo var. makuwa]) HSP 1 Score: 362.5 bits (929), Expect = 2.6e-96 Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Clc01G07600 vs. NCBI nr
Match: XP_004149477.1 (PSME3-interacting protein [Cucumis sativus] >KGN49781.1 hypothetical protein Csa_004657 [Cucumis sativus]) HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93 Identity = 200/213 (93.90%), Postives = 205/213 (96.24%), Query Frame = 0
BLAST of Clc01G07600 vs. NCBI nr
Match: XP_023549588.1 (protein FAM192A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91 Identity = 194/213 (91.08%), Postives = 203/213 (95.31%), Query Frame = 0
BLAST of Clc01G07600 vs. NCBI nr
Match: XP_022938625.1 (uncharacterized protein LOC111444804 [Cucurbita moschata]) HSP 1 Score: 343.2 bits (879), Expect = 1.6e-90 Identity = 193/213 (90.61%), Postives = 202/213 (94.84%), Query Frame = 0
BLAST of Clc01G07600 vs. ExPASy Swiss-Prot
Match: Q91WE2 (PSME3-interacting protein OS=Mus musculus OX=10090 GN=Psme3ip1 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 4.3e-06 Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 0
BLAST of Clc01G07600 vs. ExPASy TrEMBL
Match: A0A5D3BGC9 (Protein FAM192A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00120 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96 Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Clc01G07600 vs. ExPASy TrEMBL
Match: A0A5A7U2Y6 (Protein FAM192A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G001250 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96 Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Clc01G07600 vs. ExPASy TrEMBL
Match: A0A1S3CR24 (protein FAM192A OS=Cucumis melo OX=3656 GN=LOC103503791 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96 Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Clc01G07600 vs. ExPASy TrEMBL
Match: A0A0A0KPX8 (FAM192A_Fyv6_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G125710 PE=4 SV=1) HSP 1 Score: 353.6 bits (906), Expect = 5.7e-94 Identity = 200/213 (93.90%), Postives = 205/213 (96.24%), Query Frame = 0
BLAST of Clc01G07600 vs. ExPASy TrEMBL
Match: A0A6J1FKA5 (uncharacterized protein LOC111444804 OS=Cucurbita moschata OX=3662 GN=LOC111444804 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 7.8e-91 Identity = 193/213 (90.61%), Postives = 202/213 (94.84%), Query Frame = 0
BLAST of Clc01G07600 vs. TAIR 10
Match: AT3G62140.1 (CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). ) HSP 1 Score: 210.7 bits (535), Expect = 1.2e-54 Identity = 129/225 (57.33%), Postives = 159/225 (70.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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