Clc01G07090 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G07090
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr01: 7137518 .. 7138982 (-)
RNA-Seq Expression	Clc01G07090
Synteny	Clc01G07090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGGAGGGGGTTAGAGGTAAATTCAAAGGGAATGAGATCCGAGCAATGTTGCCATGTCATTATCACAGAGATTTGGGATGGAGATTTTCGTCTTCCCTTTCCCACCAATTCGATTCTCTCTCCCACAGTGAAGAGAAAGCAAATAAAAATAAAAACCCAGAAGAAAATTTTGTTAATTTTGAGCTTTCCTGGTTCTGGGTCCTTTTCAGGTTGGAGGTATTTTTGTTTTGTTAATGGAGGTTCTCTGAGGCCATACTTGTACTCGGTATAAAAAGCGAGTTCACAGCAGAGGAGAGGGAGAATTGCGACAGTTTGGTGAGGAAGAAGAATAATAAAATATATACATAAAGAAAAAGGGAGACAAAGCCAGAGAGAAAGAAAACGACATAGTGGGAGTGTGAAATAGTAAAAGAGTACAGGGAAGGAGAGCGATTAAGGAGACAGGAAAGTCAGGACAGTAACCGAGAAAATCCTTTCATAATCTTTAATATTTTGATTTCAATTCGTTGAGCTCCAAAGAACAACAACCAAGAAAGAGGAGAAATAAAAGAAACCCCATGTGAATTTCTACAGTAAAAGCCACTCCAGATCGAGCTGTGGAGGAGTTTCTTCTTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTGCATCTTTTTTGATACCCAGGTGAGCAAAACTGCAAAAGCATTGTTTCTTTCGATAACCCACTTTCCACTTTCCCCTTTTCTTTTTTCTTTTTGTTTTCTTATTGCTCTGTTTCTCTGTGTGTGTGTTTGTGTGTTTCTTCTTGTGTTCTTGGCTACGCGTGTGTGGTTTTTCTCGGGTTTAGCAGTGAATTTGATTGTTTAATGGAAATGAAACGGGTCTCTGAACTTCACGCTTGGAGGAGGAAGAGTCGAAGGGAATGATCAGCTTTCTGCTCTGTATTTTTTATTGTTTGTTTCCTTTTTTGTTACGCAAAGACCTCATTGACCAGAAAGTATATGAAGCGAGGAATTCCTTTCCTTGGAGTGTGGGCTTTTCTCTTTCCCTTGGATGTTATTTTATTTTTTACAAAAAAAAAAAAAAAGAAAAAAAAAGAAAGAAAAAAGAACACACCCATCTTTTGAGAGTCAGACTTGTCTCTGGGAATTGAAAGGCTCTCTTTATTGATACTGAGTCAGCTTAGCTCATCGTCTTTCCTTCCTACTCTAGAAATGGGTTTTGGTGAGCGCTATAAAAGGAAATGGGCCTTTTTCTTTTTGTTGGGTTTTTTGGTTTTGTTTTCTGTACTTTAAGTCCAACAGGTCAAATGGTGCTGTGACGATCTTCCTCTTGTCAACATTTTGCTTTTCTGTTTAATTGCAGAAGAAAGTGTCAAAGGAATTTTCAGAAAGAAAGTGAGCTCAAGAATGTTGCTGAGTCTTCTTCAGGTTGGCCTAGTTTTGGTGGGGGAATGAAGAAGAACAGGAAGTGA

mRNA sequence

ATGGGGAAGGAGGGGGTTAGAGGTAAATTCAAAGGGAATGAGATCCGAGCAATGTTGCCATGTCATTATCACAGAGATTTGGGATGGAGATTTTCGTCTTCCCTTTCCCACCAATTCGATTCTCTCTCCCACAGTGAAGAGAAAGCAAATAAAAATAAAAACCCAGAAGAAAATTTTGTTAATTTTGAGCTTTCCTGGTTCTGGGTCCTTTTCAGTAAAAGCCACTCCAGATCGAGCTGTGGAGGAGTTTCTTCTTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTGCATCTTTTTTGATACCCAGAAGAAAGTGTCAAAGGAATTTTCAGAAAGAAAGTGAGCTCAAGAATGTTGCTGAGTCTTCTTCAGGTTGGCCTAGTTTTGGTGGGGGAATGAAGAAGAACAGGAAGTGA

Coding sequence (CDS)

ATGGGGAAGGAGGGGGTTAGAGGTAAATTCAAAGGGAATGAGATCCGAGCAATGTTGCCATGTCATTATCACAGAGATTTGGGATGGAGATTTTCGTCTTCCCTTTCCCACCAATTCGATTCTCTCTCCCACAGTGAAGAGAAAGCAAATAAAAATAAAAACCCAGAAGAAAATTTTGTTAATTTTGAGCTTTCCTGGTTCTGGGTCCTTTTCAGTAAAAGCCACTCCAGATCGAGCTGTGGAGGAGTTTCTTCTTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTGCATCTTTTTTGATACCCAGAAGAAAGTGTCAAAGGAATTTTCAGAAAGAAAGTGAGCTCAAGAATGTTGCTGAGTCTTCTTCAGGTTGGCCTAGTTTTGGTGGGGGAATGAAGAAGAACAGGAAGTGA

Protein sequence

MGKEGVRGKFKGNEIRAMLPCHYHRDLGWRFSSSLSHQFDSLSHSEEKANKNKNPEENFVNFELSWFWVLFSKSHSRSSCGGVSSSSIISANHWLHFASFLIPRRKCQRNFQKESELKNVAESSSGWPSFGGGMKKNRK

Homology

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BLAST of Clc01G07090 vs. NCBI nr
Match: KAG6579181.1 (hypothetical protein SDJN03_23629, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 7.7e-09
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 75  HSRSSCGGVSSSSIISANHWLHFASFLIPRRKCQRNFQKESE 117
           HS S CGG SSSSIISA+HWLHF SF+IPRR C R+FQKESE
Sbjct: 26  HSGSICGGPSSSSIISAHHWLHFPSFVIPRRNCGRSFQKESE 67

The following BLAST results are available for this feature:

BLAST of Clc01G07090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579181.1	7.7e-09	78.57	hypothetical protein SDJN03_23629, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc01G07090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G07090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G07090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G07090.1	Clc01G07090.1	mRNA