Clc01G05690 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAAGGTAGAATGGCACTTTGGAGGAAGATCATCTTCTCGTCGAGCCACCACCGCCGATCACCCCCGGCAACGCTACCGTCCTTCTCTTCCGAGCTGTATGAGCACCCTTTTTCACTTCTTTGATTTTCGTTCCTCTCGTTTTACTCACATTGTCTTCGATAATCACCACCCGTCCTCCTTCAACCTCCCGCATCATCGCCCTCCCCTACCCAAAGCTTCCCATCATGGTATATACACTTTCAAAATTTTAATTTTCATTTTTTTAAAGAAAGATATTTGGTCAATTTGATCCTCTATGAATGCTTGTTATGCGTGCATGAGTAGATTAGAATATGATTCCATGTGATATATTAGATAAAGTTTTGATAATGTAATAATGTTTGATATTAAAAAAGGGGTCATATTATTACTTAATATTTTTATGGTTAATTGATCTTTAATTATATATATATAAAAGGGCCTATTTTCAAACTATAAAGAAATAAGAAAAAAAGGGAGATTTTTATTTATTTAATTTTTAATTTTTACTTACATTCTCTTTTGGGAAATTCTCAGAAAACTTTGGTACCATCTTTTTTTGTTTTTCAGTTGTTGAAGCACCAAGGAATAGCTTGGAATTAGAGGGAGCTTCAATTTCTTGCTTAAGAAATAAAGAAAAAAATTTGCAACTTCAAGTAAACTTTTCCTTCTCCTTTTTTCATCAAGTCTATTCAAAATGATAGTGTAATTATGCTCAAGAAATCATTTTTTTTTAATGTAAATTTAAAAATTTACTAACATATAATATATATCTTAAAACAGATGGGACTTCAAATCAAAACTAGAAATGGTAGCACAAAATCAAAAGCAAGTGAGCAACAACTTCCAAATAATGATCACATTATTGCATTGGAATCTCCAAGTGGAAAGACACCAAATCTCTTGGCAAGATTAATGGGTCTTGATATTCTCCCTCAAAACCCCTCTTCTTCTTTCAATTGTCGCGGGTCAAATTTCGGAACCCGTTCTCTCCCAGAGAGCCCGAGAGTATCGTCAGCAAGACTATCAGACGTCGATTGTCATCATCGTCGCCTCTCACTCCAAATTATTTCAGACAAAGAAAATATAAATTTTTTTGAAGAGGCTAAGCGAGAAAAGGAAAAAGTGAGCAAGAAAGTTGCCCTCGTTGATATCACCAATAATAACAGAAAAATAGAGTTCGGAAAACAAGAAGTTGGTTTTAGTCAAATTAAAGTCGAGATCAAGTCCTCTAAGAAACTTAAGAAAACAGCCGTTGACGAATCAAGACGTAGTTCGAAAGTCGTGCGTAAAAATCAAGAGGTAATGATTTCAAAGAAGCAAAAGCTAATATCGATGTCGATGCAAAAACCAAAGCGGAGGGCTAGAGAAGGTGAAGCATTTGATTGTCCAACAAGTAATAACCTTGTTAACAACCTCCATCATTCAACCATTTTTCCAGCAAAGAAAGAGCCTTCTCCTCCGGCGATCCAAGCCCCTCGTGAACAGGTACTCAACATATTACTTTTCATGTCCTTTCAATAAATATATATTAAAACAATTATTAAAAAATAAATAAACTTTCCTTTACTTTTTTACCTGTGATTTGTTTCTAATGACCATAAAATATTATCGAAATAAACATGTATGAAACTAGATAATGTAAATAATTAAATACAAATAAACTTTACCCAAGTCAGTCATGTGAGTCAATTCGAAAAAATGGACATCCTCCCAGAGAGAACTCAGGTAAGAAATTCAATAGTACAATAAATAAAACAATATATATTTAAATATATCATCATTTTTATTATTCTTATAATTCTCTTAAAAAATAACATAATCTTCCTCAAAGTTTTTATTTTATTTTATTTTTTTGGGTTCAAAATAAGTAGCAAGAATTTCAACCTGTCAAATTTAATAAAAAATATTAATATTAAATATAAGTTATTTTTAAATATAGTAAAATGAATTGACTTATTTACAAATATAGTAAAATATTATTGTCTATCATTGATAGACACTAATATACAATGTAACTTGATTTTACTCGCTACTTAGTAACATTCGTTTTGGCTACAAAAAGTTTCTAGTTAAATTATATTATTCTATTAAATAAAAATTTATAGTTATTTAATAAATTTTGTATTTTTTTCTTTTCAAATATTAGTTGTATGATGATGATAGATGCAATAACATGGTTTGGTAAATTGTCACGACATTACTTTTAAAAATGTCGTAGGTTGAAGTCTATGATCTTCATATTTGTGATGTAATTAGAAAGTATTAGAATTTTTTTTTTTTAAATATCTTTTCAAGAATAAAGTTTATTATTATTTTCTTGTCAACTTTTCTTAAAAACATTTTTGAAATATATAGCCCGATTTTCAGAACTACATTTTATAATTTTTCTTTTAAAATCACATATAGCTAAAGTACTTTTGACATGTTTCTATAAGTAGATTATAATATAAATTATTGCTAATAAACAATTGTTTTTTTTAATTGAAGACCAAACAATAATTATGACAGTTTTTATTTTTCATTTTTATTTATTTTTGTCCTTTAAGTTTACTTTTCTTTTAATATTAGTAGTAATTTCTACTTGAAAGATCACACAAATAAATCTTGAAAATTCTAACCATCAAATATTTTAAAACATAACTGGAAAAAAAAAAAAGACACAAGTACTACTGATACAAAAAGTTGAAACATTGTTTTAATTTATAATAGTGAACAGGACATGTAAGATTTTCTGCAAAAGAATAAATTGATTATTTATGTTGGTCAAGAGGTTCAAATTTTTCTTGTGAAAAATAGGTCAATAACTTTATTGAAGAATTAAATGCAACATTTTATTTTTTCTGCATAAGATTTTTAAGAGAAAAATAAATTTAAGCCTAAAAGTTATTTATCAAGGTTTTTTTTTTTTTTGAATAATTGGTTTACTTCAAATTAAATCTCATGTTTATTCAATTATCATTTGTCTCGCTTTGTTAAATTATTAAATAAATTCAAAATGAAGAGTAATTTAAATAAATTATTTGAATTTAGGCAATTAAATCGAGTCAAATATTTCACCTAAAATTATTTTTCATTAGATAACATGATTTTATTATTATTGTTTTTATTATCATTTATGTGATGATAATTTTAACTATATTCTTGTTTCATGCTAAATAATTGCTAGTGAATGCTAATATTAAACCAAAGAGTTGGTAATAAGTTTGCTTCAACTTTTGGTATTCAAGTCCATGCACTTTAAGAACCATTTTAAAATATAAAGAACTCTATCAAAGATTTAAAACTTGGCTTCAATGGTATTTAACCAGGAACAAAACACCTATATAACAGACTGCTTTTGTTTTTGTTTTTTTTCTTTTTCCTTACAATTTCCACAGTTTTCATATTTCTTAACTAAACATTTAAAACATTATCAAACTTTTTTTTTTTTTTTTATAAGCTCAATTTCAAAAACTAAAAATCAAAAATTGCCATAATTTGATAATCATTTATTATTATTATTTTTTTAAAATTATGTTTGTTTTCTCACATTTTTTTCTCATGGTTTTCATATTTAGACATATTAGAATTCTTAGCTAATTTCAAAAAACAAAAACTTCTTTTTGAAAACTATTTCTTTATACATATACAAAATTTAGCTTTGATTTTGAAAACTCCTAAAACGTAGTCAACAAAACATAGAAAACAATAGATGGAAGTGATGTTTATAGGTTTAATTTTTAAAACATACATTTTAGTTCTACATTTCTTACTTTGTTATTTACTTTCTACTCATGTTTTCAAAATCTAAGCCAATTTTAAAAACTGAAAAGTAATTTTAAAAACTTATTTTTGTTTTTAAAATTTAACTAAGAATTATTGAACTAAGAAACAACGTAAAACCCATGATAAAAAATTCCAAAAACCAAAAACAAAAAATGAAATCACTATCAAACCAACCCATTAAAATTCTTTATTCCAACAATCTCACAAATTGTTTCGAAATCAGCCGTGTAGGTACTCAAAGGGCAAGGCGAAGCCGGCGGGCAGAGACGGCGGAGAAAGAAACGCCGTTGACAAGACCACCACCACAGACGGCGGATCAACGGAGTTCGAATACATCAAAAGAATACTAACCAACCACGGCAATTCAAACTCGATCATCTCACCCCCCAATAACCCGACGAACCCCTCAATCTTCCACCACCCAGAAGCGGCGGAGGACCAGCAATGGGGCAGACGACTACTAAACTGTTGGCACGTGCGAAGAGGAATGAAGGGATGGGAATTGGGTGAAGAAGCTGTGAGGGAGAGATCGGTGAAGAAAGAGTACTTCCCACGTGCGAAATATGAAGTAGTGGAAGATATGGATGCTTTAATAATCAACAAGAGAGTGGTGGAGGAAACAGAAGGGATTGTGAAGGTGGTTGAGCTTCACATTTTAGACTCCCTTTTACGAGAAACTGTTGCCCTAATTTCCTCCCTACCAAAATGCTCTCATTTTCCTAATTTCTAA ATGGGAAAGGTAGAATGGCACTTTGGAGGAAGATCATCTTCTCGTCGAGCCACCACCGCCGATCACCCCCGGCAACGCTACCGTCCTTCTCTTCCGAGCTGTATGAGCACCCTTTTTCACTTCTTTGATTTTCGTTCCTCTCGTTTTACTCACATTGTCTTCGATAATCACCACCCGTCCTCCTTCAACCTCCCGCATCATCGCCCTCCCCTACCCAAAGCTTCCCATCATGTTGTTGAAGCACCAAGGAATAGCTTGGAATTAGAGGGAGCTTCAATTTCTTGCTTAAGAAATAAAGAAAAAAATTTGCAACTTCAAATGGGACTTCAAATCAAAACTAGAAATGGTAGCACAAAATCAAAAGCAAGTGAGCAACAACTTCCAAATAATGATCACATTATTGCATTGGAATCTCCAAGTGGAAAGACACCAAATCTCTTGGCAAGATTAATGGGTCTTGATATTCTCCCTCAAAACCCCTCTTCTTCTTTCAATTGTCGCGGGTCAAATTTCGGAACCCGTTCTCTCCCAGAGAGCCCGAGAGTATCGTCAGCAAGACTATCAGACGTCGATTGTCATCATCGTCGCCTCTCACTCCAAATTATTTCAGACAAAGAAAATATAAATTTTTTTGAAGAGGCTAAGCGAGAAAAGGAAAAAGTGAGCAAGAAAGTTGCCCTCGTTGATATCACCAATAATAACAGAAAAATAGAGTTCGGAAAACAAGAAGTTGGTTTTAGTCAAATTAAAGTCGAGATCAAGTCCTCTAAGAAACTTAAGAAAACAGCCGTTGACGAATCAAGACGTAGTTCGAAAGTCGTGCGTAAAAATCAAGAGGTAATGATTTCAAAGAAGCAAAAGCTAATATCGATGTCGATGCAAAAACCAAAGCGGAGGGCTAGAGAAGGTGAAGCATTTGATTGTCCAACAAGTAATAACCTTGTTAACAACCTCCATCATTCAACCATTTTTCCAGCAAAGAAAGAGCCTTCTCCTCCGGCGATCCAAGCCCCTCGTGAACAGGTTGAAGTCTATGATCTTCATATTTGTGATGTAATTAGAAAGTACTCAAAGGGCAAGGCGAAGCCGGCGGGCAGAGACGGCGGAGAAAGAAACGCCGTTGACAAGACCACCACCACAGACGGCGGATCAACGGAGTTCGAATACATCAAAAGAATACTAACCAACCACGGCAATTCAAACTCGATCATCTCACCCCCCAATAACCCGACGAACCCCTCAATCTTCCACCACCCAGAAGCGGCGGAGGACCAGCAATGGGGCAGACGACTACTAAACTGTTGGCACGTGCGAAGAGGAATGAAGGGATGGGAATTGGGTGAAGAAGCTGTGAGGGAGAGATCGGTGAAGAAAGAGTACTTCCCACGTGCGAAATATGAAGTAGTGGAAGATATGGATGCTTTAATAATCAACAAGAGAGTGGTGGAGGAAACAGAAGGGATTGTGAAGGTGGTTGAGCTTCACATTTTAGACTCCCTTTTACGAGAAACTGTTGCCCTAATTTCCTCCCTACCAAAATGCTCTCATTTTCCTAATTTCTAA ATGGGAAAGGTAGAATGGCACTTTGGAGGAAGATCATCTTCTCGTCGAGCCACCACCGCCGATCACCCCCGGCAACGCTACCGTCCTTCTCTTCCGAGCTGTATGAGCACCCTTTTTCACTTCTTTGATTTTCGTTCCTCTCGTTTTACTCACATTGTCTTCGATAATCACCACCCGTCCTCCTTCAACCTCCCGCATCATCGCCCTCCCCTACCCAAAGCTTCCCATCATGTTGTTGAAGCACCAAGGAATAGCTTGGAATTAGAGGGAGCTTCAATTTCTTGCTTAAGAAATAAAGAAAAAAATTTGCAACTTCAAATGGGACTTCAAATCAAAACTAGAAATGGTAGCACAAAATCAAAAGCAAGTGAGCAACAACTTCCAAATAATGATCACATTATTGCATTGGAATCTCCAAGTGGAAAGACACCAAATCTCTTGGCAAGATTAATGGGTCTTGATATTCTCCCTCAAAACCCCTCTTCTTCTTTCAATTGTCGCGGGTCAAATTTCGGAACCCGTTCTCTCCCAGAGAGCCCGAGAGTATCGTCAGCAAGACTATCAGACGTCGATTGTCATCATCGTCGCCTCTCACTCCAAATTATTTCAGACAAAGAAAATATAAATTTTTTTGAAGAGGCTAAGCGAGAAAAGGAAAAAGTGAGCAAGAAAGTTGCCCTCGTTGATATCACCAATAATAACAGAAAAATAGAGTTCGGAAAACAAGAAGTTGGTTTTAGTCAAATTAAAGTCGAGATCAAGTCCTCTAAGAAACTTAAGAAAACAGCCGTTGACGAATCAAGACGTAGTTCGAAAGTCGTGCGTAAAAATCAAGAGGTAATGATTTCAAAGAAGCAAAAGCTAATATCGATGTCGATGCAAAAACCAAAGCGGAGGGCTAGAGAAGGTGAAGCATTTGATTGTCCAACAAGTAATAACCTTGTTAACAACCTCCATCATTCAACCATTTTTCCAGCAAAGAAAGAGCCTTCTCCTCCGGCGATCCAAGCCCCTCGTGAACAGGTTGAAGTCTATGATCTTCATATTTGTGATGTAATTAGAAAGTACTCAAAGGGCAAGGCGAAGCCGGCGGGCAGAGACGGCGGAGAAAGAAACGCCGTTGACAAGACCACCACCACAGACGGCGGATCAACGGAGTTCGAATACATCAAAAGAATACTAACCAACCACGGCAATTCAAACTCGATCATCTCACCCCCCAATAACCCGACGAACCCCTCAATCTTCCACCACCCAGAAGCGGCGGAGGACCAGCAATGGGGCAGACGACTACTAAACTGTTGGCACGTGCGAAGAGGAATGAAGGGATGGGAATTGGGTGAAGAAGCTGTGAGGGAGAGATCGGTGAAGAAAGAGTACTTCCCACGTGCGAAATATGAAGTAGTGGAAGATATGGATGCTTTAATAATCAACAAGAGAGTGGTGGAGGAAACAGAAGGGATTGTGAAGGTGGTTGAGCTTCACATTTTAGACTCCCTTTTACGAGAAACTGTTGCCCTAATTTCCTCCCTACCAAAATGCTCTCATTTTCCTAATTTCTAA MGKVEWHFGGRSSSRRATTADHPRQRYRPSLPSCMSTLFHFFDFRSSRFTHIVFDNHHPSSFNLPHHRPPLPKASHHVVEAPRNSLELEGASISCLRNKEKNLQLQMGLQIKTRNGSTKSKASEQQLPNNDHIIALESPSGKTPNLLARLMGLDILPQNPSSSFNCRGSNFGTRSLPESPRVSSARLSDVDCHHRRLSLQIISDKENINFFEEAKREKEKVSKKVALVDITNNNRKIEFGKQEVGFSQIKVEIKSSKKLKKTAVDESRRSSKVVRKNQEVMISKKQKLISMSMQKPKRRAREGEAFDCPTSNNLVNNLHHSTIFPAKKEPSPPAIQAPREQVEVYDLHICDVIRKYSKGKAKPAGRDGGERNAVDKTTTTDGGSTEFEYIKRILTNHGNSNSIISPPNNPTNPSIFHHPEAAEDQQWGRRLLNCWHVRRGMKGWELGEEAVRERSVKKEYFPRAKYEVVEDMDALIINKRVVEETEGIVKVVELHILDSLLRETVALISSLPKCSHFPNF Homology
BLAST of Clc01G05690 vs. NCBI nr
Match: XP_011656164.1 (uncharacterized protein LOC105435648 [Cucumis sativus] >KGN50399.1 hypothetical protein Csa_000155 [Cucumis sativus]) HSP 1 Score: 441.8 bits (1135), Expect = 8.1e-120 Identity = 314/550 (57.09%), Postives = 357/550 (64.91%), Query Frame = 0
BLAST of Clc01G05690 vs. NCBI nr
Match: KAG7035594.1 (hypothetical protein SDJN02_02391, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 255.4 bits (651), Expect = 1.1e-63 Identity = 212/535 (39.63%), Postives = 261/535 (48.79%), Query Frame = 0
BLAST of Clc01G05690 vs. NCBI nr
Match: KAA0055152.1 (putative dna repair [Cucumis melo var. makuwa] >TYK00310.1 putative dna repair [Cucumis melo var. makuwa]) HSP 1 Score: 246.5 bits (628), Expect = 5.0e-61 Identity = 190/376 (50.53%), Postives = 233/376 (61.97%), Query Frame = 0
BLAST of Clc01G05690 vs. NCBI nr
Match: KAG6605686.1 (hypothetical protein SDJN03_03003, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 206.5 bits (524), Expect = 5.7e-49 Identity = 191/537 (35.57%), Postives = 240/537 (44.69%), Query Frame = 0
BLAST of Clc01G05690 vs. NCBI nr
Match: XP_022958521.1 (uncharacterized protein LOC111459727 [Cucurbita moschata]) HSP 1 Score: 205.7 bits (522), Expect = 9.8e-49 Identity = 181/473 (38.27%), Postives = 222/473 (46.93%), Query Frame = 0
BLAST of Clc01G05690 vs. ExPASy TrEMBL
Match: A0A0A0KNC2 (VARLMGL domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G172790 PE=4 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 3.9e-120 Identity = 314/550 (57.09%), Postives = 357/550 (64.91%), Query Frame = 0
BLAST of Clc01G05690 vs. ExPASy TrEMBL
Match: A0A5D3BMU7 (Putative dna repair OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00570 PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 2.4e-61 Identity = 190/376 (50.53%), Postives = 233/376 (61.97%), Query Frame = 0
BLAST of Clc01G05690 vs. ExPASy TrEMBL
Match: A0A6J1H2A5 (uncharacterized protein LOC111459727 OS=Cucurbita moschata OX=3662 GN=LOC111459727 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 4.7e-49 Identity = 181/473 (38.27%), Postives = 222/473 (46.93%), Query Frame = 0
BLAST of Clc01G05690 vs. ExPASy TrEMBL
Match: A0A7J8V457 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_009685 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 2.9e-30 Identity = 211/696 (30.32%), Postives = 302/696 (43.39%), Query Frame = 0
BLAST of Clc01G05690 vs. ExPASy TrEMBL
Match: A0A7J9A4K1 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_006691 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 3.8e-30 Identity = 210/695 (30.22%), Postives = 298/695 (42.88%), Query Frame = 0
BLAST of Clc01G05690 vs. TAIR 10
Match: AT5G62170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 1.4e-16 Identity = 182/673 (27.04%), Postives = 266/673 (39.52%), Query Frame = 0
BLAST of Clc01G05690 vs. TAIR 10
Match: AT4G25430.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 75.1 bits (183), Expect = 1.9e-13 Identity = 81/236 (34.32%), Postives = 112/236 (47.46%), Query Frame = 0
BLAST of Clc01G05690 vs. TAIR 10
Match: AT5G51850.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62170.1); Has 384 Blast hits to 375 proteins in 79 species: Archae - 0; Bacteria - 14; Metazoa - 135; Fungi - 31; Plants - 92; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 1.1e-10 Identity = 153/600 (25.50%), Postives = 237/600 (39.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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