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Clc01G05590 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACTTCAAAAGGCGTATGCTCTCCACACGTTCATCACCCATTATTTCAGTACTTCACCACACCAACACATCTCTGCAAATCATTGCACAATGGCGTCCATTGTACCCATTTCTGCACCTTCTTCCTTATCAATAAGAACCCATCCTCCTCATCCTAATTTCAACGCCCGTCGTATGGTGGTTGTAAGAGCTGAAGGCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGGTTCCTTTTCTTTTCTTTCTCATTATTTCCCTTTTATTCTCTTTCTCACTAAGTTAATTAGAATTAAAATGGGGGAGGAATTAGAAATTTTACTTTCTTAGATCATTTTTTTTTTCTCATTTTTTTCCTCAATTTTTTTTAGGTTTAAATGTTATTTTTGTAACAATTTTAGTTCATTTTGGTGGTTGAACTTTCAAACATTAGTCATTTAGACCTCTTAAAAATGAGGTCAAAATGAAAATGAAGAGACAAAAAAATGTCACTTTTTGAAAGTAAAGGACCAAAGTAAACATTGTTGATGCAAAATTTGGGGCTTGGAAAAGGCACCTAGCCCCCCCTTACATGACCCTCACCACGACACCAACTCTTATCTTAAGAGAACTAAATAATAGAGAATAAATCATAAGTTTTTAGATATCTTTAATGGAGGCATTATGGTATATTTACAGGGGATTTGATACCAGATTTATCTTAAATCTACTAAGATTAGGATATCAGATTTTTCAATTTCATTTTATCTTATTTTATATTATCTCATACTATTTTGATTTTTGCTTTATTTCATTAGGTTGAAATTCATTTCTCAACAAACATTTTGAAAATATAGGGACAAAAATTAATTAAAAAAAACCAAATAGGGACCAAAGTAGTATTCAAAACCTTGATTATTAATGTAATATAGGGACTAAATTAGAAAAATCTTTTTGTGCAAAAATTTACAATCCATAAAAGTAGAGCGTTTAAATTATTATTATTATTTATTTATTTATTTTTATTTTTATTTTATTTTATTTTATTTGTATATCTTATAAATGGGTCCGTTTTATATTTCTTTGGAGTACATTGAATAAATGAAATTGTTTGGGACTAAATTGGAAAACCTTAAAAAGATAAGGGAGTAAATTGAAAATTTGGTGAAAGATGTATGTTTTGAGTGCAGATGTTGGAGGTCAGCCACATTTCCTATTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAG ATGGAACTTCAAAAGGCGTATGCTCTCCACACGTTCATCACCCATTATTTCAGTACTTCACCACACCAACACATCTCTGCAAATCATTGCACAATGGCGTCCATTGTACCCATTTCTGCACCTTCTTCCTTATCAATAAGAACCCATCCTCCTCATCCTAATTTCAACGCCCGTCGTATGGTGGTTGTAAGAGCTGAAGGCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGATGTTGGAGGTCAGCCACATTTCCTATTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAG ATGGAACTTCAAAAGGCGTATGCTCTCCACACGTTCATCACCCATTATTTCAGTACTTCACCACACCAACACATCTCTGCAAATCATTGCACAATGGCGTCCATTGTACCCATTTCTGCACCTTCTTCCTTATCAATAAGAACCCATCCTCCTCATCCTAATTTCAACGCCCGTCGTATGGTGGTTGTAAGAGCTGAAGGCGGCAGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATCGATCAACTTTCCAAGCCCCTCACTCCTTATTGCCGATGTTGGAGGTCAGCCACATTTCCTATTTGTGATGGAAGCCATGTTAAGCACAACAAGGCAACTGGGGATAATGTTGGTCCTTTGCTCTTAAAGAAGTAG MELQKAYALHTFITHYFSTSPHQHISANHCTMASIVPISAPSSLSIRTHPPHPNFNARRMVVVRAEGGSGGEPINPAIRKTEDKVVDSVLIDQLSKPLTPYCRCWRSATFPICDGSHVKHNKATGDNVGPLLLKK Homology
BLAST of Clc01G05590 vs. NCBI nr
Match: XP_038876467.1 (CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]) HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40 Identity = 88/107 (82.24%), Postives = 93/107 (86.92%), Query Frame = 0
BLAST of Clc01G05590 vs. NCBI nr
Match: XP_004143713.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 hypothetical protein Csa_000068 [Cucumis sativus]) HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39 Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0
BLAST of Clc01G05590 vs. NCBI nr
Match: XP_008467263.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo] >KAA0055137.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo var. makuwa]) HSP 1 Score: 152.9 bits (385), Expect = 2.0e-33 Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Clc01G05590 vs. NCBI nr
Match: XP_022996357.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]) HSP 1 Score: 152.1 bits (383), Expect = 3.3e-33 Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of Clc01G05590 vs. NCBI nr
Match: XP_023534172.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]) HSP 1 Score: 151.0 bits (380), Expect = 7.4e-33 Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy Swiss-Prot
Match: Q9FLI7 (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702 GN=NEET PE=1 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 4.2e-31 Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy Swiss-Prot
Match: Q7T326 (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.7e-17 Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy Swiss-Prot
Match: C1BI29 (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN=cisd2a PE=2 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 5.9e-17 Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy Swiss-Prot
Match: Q6PCF8 (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd2-a PE=2 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 5.9e-17 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy Swiss-Prot
Match: Q6AZG1 (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd2-b PE=2 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 5.9e-17 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy TrEMBL
Match: A0A0A0KL88 (ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39 Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy TrEMBL
Match: A0A5A7UKN7 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00670 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 9.5e-34 Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy TrEMBL
Match: A0A1S3CTC1 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC103504660 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 9.5e-34 Identity = 84/109 (77.06%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy TrEMBL
Match: A0A6J1K1P5 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=LOC111491613 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33 Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 0
BLAST of Clc01G05590 vs. ExPASy TrEMBL
Match: A0A6J1E4B9 (CDGSH iron-sulfur domain-containing protein NEET OS=Momordica charantia OX=3673 GN=LOC111025950 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31 Identity = 77/114 (67.54%), Postives = 84/114 (73.68%), Query Frame = 0
BLAST of Clc01G05590 vs. TAIR 10
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding ) HSP 1 Score: 135.6 bits (340), Expect = 3.0e-32 Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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