Clc01G05490 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G05490
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	rRNA processing protein-related
Location	ClcChr01: 5084081 .. 5086623 (-)
RNA-Seq Expression	Clc01G05490
Synteny	Clc01G05490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCATCCTCTTACTTCATTCTCTAAAACCCTATTTCTCGTTCCTGCTCGACGCCGTCTCACCCGCTGCACGCTCGGCTACCGTAGTCCCAGCCCTCCGACGAAATCGCCGCCGCCCATCCCTCTCACACTCTCGCCTCTCCGACCGTGACGACAACCCCAAGGTTTTATTTTCTGTTTTGTTTCGTTGGGTTATGGAGAATCAAGAACAATTGTTTTTTTTTTTTCTTTTCTTTTGTTGATTTCTTCTTCAATTAATGTTCAACTAGCTTAAATGAAATTAAGAATGTACACTTTACATGTATCATTCGTATCTGACTAAAGAGGAAAAAATGGTTAAGAAAAATAAATGTCACAGTTTGGTTGGCTGTAAAATACTTGAAAAGATTGATATTTTTGTTATCAAATTAAGGAAAAAAAACCCAACAAAATAGAAAATTAAACTGGAGTCTAGTTTGTTTGAATGGCTTTGAGTCTTATTGATTATAGAAGAAACTATCCAATTCCAAGCCTATGAAATGGCATGGGGAGGTATTTGAATATGAGCAGGCTATGTGCGTGTGTGTATGTATATGTGTATATATATCTTATGGTGTAGAATTGGAAACAGATTTTTGTGCTTTCTTTGCCTTGCCTGGCTAGGATTGCTAAATAGTGCTCATAGGCATTTTGAAACACTGTTTATATGGTAATTTTTGGTTGTTCTTGTAGCAAGTGTATGTTATTATACCGTGAGGATTTTGTTAGTTCCTATTTAGCTTGTATTGAGTATTTTATATGGCTCAACTTTTAGTCTTCAAGTGATGCACAATGCTGTCATAACCCTTATAGGTCCTTTTGTGGTCATGATAATGGAATGATTAGTCTCTTGATTTATGAAAAGTTCATTTTTCCTCAAATGATGCTAATGTTATTTTTATTTAATTAGTGATAGTTATGGAATTGGATGTAGAATCTAAAAGTTAGACCAGGTGTCTCTCGCAAACTCTAAATCCTATTGTGGTCATGATAATTGAATAATTAGTCCCTTGATTTATGCAAAGTTCCTGTTTCTGCAAATAATGCTAATGTTATTTCTATTTAATTAGTGATAGTTATGAAATTAAATCTAGGATTATTGTCGTCTTCCTTGATTATGAACATTTGATTTCGATCACTTGGTGTTTGGAATAGCACTAGCAAGTTTTGAGGTTAACAACTAACGTTAACAATGGTTATCATCATGCATAGGTTTTAAATGGGTGTATCAGTTAAAGATGCTAGCTTATTCGATGAGGATACAATAGATGATGACAATCTTGGTAGTGAGGATTCGGATTTTGAATCTGAATCTGAATCGGAATCTGAGGAGGAGGAAGAGGATGTGGAACTGTCTGAACCATCAAAGAATGCGATATATAATGCTGATGGTCTCCTCGATAAACTTGGAGATATTAGCTGGCCTGAAAATGTGGAGTGGATACACAAGCTATCTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGCAGGGTACAAGAATGGCCCTTGAGAAGTTCCAATCTTTAGGACTCCCTTTTCTCAGGCCTTCAGATTATTACGCAGAGATGGTGAAGACAGATACTCACATGGAAAAAGTAAAAGGTCGGCTGCTGTCTGAACAGAGAAAGATGGAGGAGGCTGAGGAAAGAAGGAAGGCAAGAGAAGCAAAGAAATTGGCTAAAGAGATTCAAGCTCAGAAGCAGAAGGAGAGGGCTAAGCAGAAGAAAGAGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAATGGTTTTGCTGGAGGTGATAAAGGTGGTGATATGGACTTTTCCTTTGAAGATGGAAAGACATTTGAGAGATCTGGAGGTAAGAAGAGGCCAGGGGTGTCTCCTGGTGATCGCTCTGGAGGGAAGGCGAGACATGGAGGAGGAAAAGGGAAAAATCCCAAGAAGAAGAGAGATTTTAGAGATTCCAAGTTTGGATTTGGCGGGAGAAAAAGTATGAAAAAGCAGAACACAGCGGAGACAACAAATGATATTAGGGGATTCAACAATGGCAGTTTATCAAGCAACAAAAGAAGGAAGAGGTCATAGATTAATGCACTAGTTTAGTTTCAAGTTTAAAGATGGTGGGTATTGTGTTCACTTTAAAATTTTGTCTGATCTTTTGAAATTTTCATTCTGTAATGCTGTGAGCCTTTGTGAGAAATCCTAGAAGATGAAAATTATAGTTTGTATTTCTTTTGGAAGAAAAAATCCTAATTTTGGTAGTTATTGTTATTGTGCCATTATGGTTTTGAATCTTATAAATTTTGATAGAGTTGGTGTTCTAATCAAAGATTTGCAAATCATTCTTGTGTCCAGAGGGTGTGGAGATGTCTGTGTTGGGTTAGTTTTCTTGGATTGGTTAAAAGATGTTTTAATCCAATCATCTTAGCTGATGTGATGTAATTTAATCTAATTATGGTGTTTTTTAATGTCAGGTTGTTTGACTT

mRNA sequence

AACCATCCTCTTACTTCATTCTCTAAAACCCTATTTCTCGTTCCTGCTCGACGCCGTCTCACCCGCTGCACGCTCGGCTACCGTAGTCCCAGCCCTCCGACGAAATCGCCGCCGCCCATCCCTCTCACACTCTCGCCTCTCCGACCGTGACGACAACCCCAAGGTTTTAAATGGGTGTATCAGTTAAAGATGCTAGCTTATTCGATGAGGATACAATAGATGATGACAATCTTGGTAGTGAGGATTCGGATTTTGAATCTGAATCTGAATCGGAATCTGAGGAGGAGGAAGAGGATGTGGAACTGTCTGAACCATCAAAGAATGCGATATATAATGCTGATGGTCTCCTCGATAAACTTGGAGATATTAGCTGGCCTGAAAATGTGGAGTGGATACACAAGCTATCTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGCAGGGTACAAGAATGGCCCTTGAGAAGTTCCAATCTTTAGGACTCCCTTTTCTCAGGCCTTCAGATTATTACGCAGAGATGGTGAAGACAGATACTCACATGGAAAAAGTAAAAGGTCGGCTGCTGTCTGAACAGAGAAAGATGGAGGAGGCTGAGGAAAGAAGGAAGGCAAGAGAAGCAAAGAAATTGGCTAAAGAGATTCAAGCTCAGAAGCAGAAGGAGAGGGCTAAGCAGAAGAAAGAGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAATGGTTTTGCTGGAGGTGATAAAGGTGGTGATATGGACTTTTCCTTTGAAGATGGAAAGACATTTGAGAGATCTGGAGGTAAGAAGAGGCCAGGGGTGTCTCCTGGTGATCGCTCTGGAGGGAAGGCGAGACATGGAGGAGGAAAAGGGAAAAATCCCAAGAAGAAGAGAGATTTTAGAGATTCCAAGTTTGGATTTGGCGGGAGAAAAAGTATGAAAAAGCAGAACACAGCGGAGACAACAAATGATATTAGGGGATTCAACAATGGCAGTTTATCAAGCAACAAAAGAAGGAAGAGGTCATAGATTAATGCACTAGTTTAGTTTCAAGTTTAAAGATGGTGGGTATTGTGTTCACTTTAAAATTTTGTCTGATCTTTTGAAATTTTCATTCTGTAATGCTGTGAGCCTTTGTGAGAAATCCTAGAAGATGAAAATTATAGTTTGTATTTCTTTTGGAAGAAAAAATCCTAATTTTGGTAGTTATTGTTATTGTGCCATTATGGTTTTGAATCTTATAAATTTTGATAGAGTTGGTGTTCTAATCAAAGATTTGCAAATCATTCTTGTGTCCAGAGGGTGTGGAGATGTCTGTGTTGGGTTAGTTTTCTTGGATTGGTTAAAAGATGTTTTAATCCAATCATCTTAGCTGATGTGATGTAATTTAATCTAATTATGGTGTTTTTTAATGTCAGGTTGTTTGACTT

Coding sequence (CDS)

ATGGGTGTATCAGTTAAAGATGCTAGCTTATTCGATGAGGATACAATAGATGATGACAATCTTGGTAGTGAGGATTCGGATTTTGAATCTGAATCTGAATCGGAATCTGAGGAGGAGGAAGAGGATGTGGAACTGTCTGAACCATCAAAGAATGCGATATATAATGCTGATGGTCTCCTCGATAAACTTGGAGATATTAGCTGGCCTGAAAATGTGGAGTGGATACACAAGCTATCTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGCAGGGTACAAGAATGGCCCTTGAGAAGTTCCAATCTTTAGGACTCCCTTTTCTCAGGCCTTCAGATTATTACGCAGAGATGGTGAAGACAGATACTCACATGGAAAAAGTAAAAGGTCGGCTGCTGTCTGAACAGAGAAAGATGGAGGAGGCTGAGGAAAGAAGGAAGGCAAGAGAAGCAAAGAAATTGGCTAAAGAGATTCAAGCTCAGAAGCAGAAGGAGAGGGCTAAGCAGAAGAAAGAGGAGATTGAATCTGTTAAGAAATGGAGGAAGCAGAGGCAAAAGAATGGTTTTGCTGGAGGTGATAAAGGTGGTGATATGGACTTTTCCTTTGAAGATGGAAAGACATTTGAGAGATCTGGAGGTAAGAAGAGGCCAGGGGTGTCTCCTGGTGATCGCTCTGGAGGGAAGGCGAGACATGGAGGAGGAAAAGGGAAAAATCCCAAGAAGAAGAGAGATTTTAGAGATTCCAAGTTTGGATTTGGCGGGAGAAAAAGTATGAAAAAGCAGAACACAGCGGAGACAACAAATGATATTAGGGGATTCAACAATGGCAGTTTATCAAGCAACAAAAGAAGGAAGAGGTCATAG

Protein sequence

MGVSVKDASLFDEDTIDDDNLGSEDSDFESESESESEEEEEDVELSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRSGGKARHGGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRRKRS

Homology

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BLAST of Clc01G05490 vs. NCBI nr
Match: XP_038876320.1 (probable rRNA-processing protein EBP2 homolog [Benincasa hispida])

HSP 1 Score: 513.5 bits (1321), Expect = 1.3e-141
Identity = 286/302 (94.70%), Postives = 293/302 (97.02%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESESESEEEEEDVELSEPSKNAIYNADGLL 60
           MGVSVKDAS  +ED IDDD+L SEDS+FESESESES EE+EDVELSEPSKNAIYNADGLL
Sbjct: 1   MGVSVKDASFLNEDKIDDDDLHSEDSEFESESESES-EEDEDVELSEPSKNAIYNADGLL 60

Query: 61  DKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGL 120
           DKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQG RMALEKFQSLGL
Sbjct: 61  DKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGARMALEKFQSLGL 120

Query: 121 PFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKER 180
           PFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKER
Sbjct: 121 PFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKER 180

Query: 181 AKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRSG 240
           AKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR+G
Sbjct: 181 AKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRTG 240

Query: 241 GKARH-GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRRK 300
           GKARH GGGKGKNPKKKRDFRDSKFGFGGRKS+ KQNTAETTNDI GFNNGSLSSNKRRK
Sbjct: 241 GKARHGGGGKGKNPKKKRDFRDSKFGFGGRKSLNKQNTAETTNDISGFNNGSLSSNKRRK 300

Query: 301 RS 302
           RS
Sbjct: 301 RS 301

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BLAST of Clc01G05490 vs. NCBI nr
Match: XP_008467285.1 (PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 1.4e-140
Identity = 283/306 (92.48%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESE--SESEEEEEDVELSEPSKNAIYNADG 60
           MGVS+KDA   +EDT++DD+L SEDS+FESESE  SESEEEEEDVELSEPSKNAIYNADG
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 60

Query: 61  LLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120
           LLDKLGDISWPENVEWIHKL+ DIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL
Sbjct: 61  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120

Query: 121 GLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180
           GLPFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK
Sbjct: 121 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180

Query: 181 ERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240
           ERAKQKKEEIESVKKWRKQRQKN FAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR
Sbjct: 181 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240

Query: 241 SGGKARH---GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSN 300
           SGGKARH   GGGKGKN KKKRDFRDSKFGFGGRKS+KKQNTAETTNDIRGFNNGSLS+N
Sbjct: 241 SGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSLSNN 300

Query: 301 KRRKRS 302
           KRRK+S
Sbjct: 301 KRRKKS 306

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BLAST of Clc01G05490 vs. NCBI nr
Match: KAA0055124.1 (putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa] >TYK20735.1 putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 510.0 bits (1312), Expect = 1.4e-140
Identity = 283/306 (92.48%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESE--SESEEEEEDVELSEPSKNAIYNADG 60
           MGVS+KDA   +EDT++DD+L SEDS+FESESE  SESEEEEEDVELSEPSKNAIYNADG
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 69

Query: 61  LLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120
           LLDKLGDISWPENVEWIHKL+ DIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL
Sbjct: 70  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 129

Query: 121 GLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180
           GLPFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK
Sbjct: 130 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 189

Query: 181 ERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240
           ERAKQKKEEIESVKKWRKQRQKN FAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR
Sbjct: 190 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 249

Query: 241 SGGKARH---GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSN 300
           SGGKARH   GGGKGKN KKKRDFRDSKFGFGGRKS+KKQNTAETTNDIRGFNNGSLS+N
Sbjct: 250 SGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSLSNN 309

Query: 301 KRRKRS 302
           KRRK+S
Sbjct: 310 KRRKKS 315

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BLAST of Clc01G05490 vs. NCBI nr
Match: XP_004143659.2 (probable rRNA-processing protein EBP2 homolog [Cucumis sativus] >KGN50375.1 hypothetical protein Csa_000648 [Cucumis sativus])

HSP 1 Score: 499.6 bits (1285), Expect = 1.9e-137
Identity = 279/312 (89.42%), Postives = 291/312 (93.27%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESESES---EEEEEDVELSEPSKNAIYNAD 60
           MGVS+KDAS  +EDT++D +  SEDS+FESESES S   EEEEEDVELSEPSKNAIYNAD
Sbjct: 1   MGVSIKDASFLNEDTVEDGDFSSEDSEFESESESGSGSEEEEEEDVELSEPSKNAIYNAD 60

Query: 61  GLLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQS 120
           GLLDKLGDISWPENVEWIHKL+ DI+QEKEVDVNDDL RELAFYTQALQGTRMALEKFQS
Sbjct: 61  GLLDKLGDISWPENVEWIHKLTFDIEQEKEVDVNDDLTRELAFYTQALQGTRMALEKFQS 120

Query: 121 LGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ 180
           LGLPFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ
Sbjct: 121 LGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ 180

Query: 181 KERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD 240
           KERAKQKKEEIESVKKWRKQRQKN FAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD
Sbjct: 181 KERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD 240

Query: 241 RSGGKARH--------GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNN 300
           RSGGKARH        GGGKGK PKKKRDFRDSKFGFGGRKS+KKQNTA+TTNDIRGFNN
Sbjct: 241 RSGGKARHGGGGGGGGGGGKGKIPKKKRDFRDSKFGFGGRKSLKKQNTADTTNDIRGFNN 300

Query: 301 GSLSSNKRRKRS 302
           GSLSSNKRRK+S
Sbjct: 301 GSLSSNKRRKKS 312

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BLAST of Clc01G05490 vs. NCBI nr
Match: XP_022926294.1 (probable rRNA-processing protein EBP2 homolog [Cucurbita moschata])

HSP 1 Score: 476.1 bits (1224), Expect = 2.2e-130
Identity = 270/308 (87.66%), Postives = 285/308 (92.53%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDF------ESESESESEEEEEDVELSEPSKNAIY 60
           MGVS KDA   +EDT++DD+LG+EDSDF      ESESESES EEEE+V+LSEPSK AIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NADGLLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRPSDYYAEMVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQA
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 QKQKERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVS 240
           QK KERAKQKKEEIESVKKWRKQRQK+GFAGGDKGGDM+ SFEDGK FERSGGKKRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240

Query: 241 PGDRSGGKARH-GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLS 300
           PGDRSGGKARH  GGKGKN KKK+DFRDSKFGFGGRKS+KKQNTAETTNDIRGFN+ SL 
Sbjct: 241 PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL 300

Query: 301 SNKRRKRS 302
           SNKRRKRS
Sbjct: 301 SNKRRKRS 308

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BLAST of Clc01G05490 vs. ExPASy Swiss-Prot
Match: Q9LUJ5 (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.3e-84
Identity = 188/295 (63.73%), Postives = 231/295 (78.31%), Query Frame = 0


Query: 12  DEDTIDDD--NLGSED--SDFESESESESEEEEEDVE-LSEPSKNAIYNADGLLDKLGDI 71
           +ED + DD  N+  ED  +D E+ES S+S+ E E  E L+EP+K AIYN DGLLDKL DI
Sbjct: 4   EEDIVSDDEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQDI 63

Query: 72  SWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGLPFLRPS 131
           SWPE+V+W HKL+++IDQ   VDVNDDLARE AFYTQAL+GTR A  K   +G+ FLRP+
Sbjct: 64  SWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPA 123

Query: 132 DYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKERAKQKKE 191
           +YYAEMVK+D HMEKVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK KERAK+KK+
Sbjct: 124 NYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKD 183

Query: 192 EIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRSGGKARHG 251
            IESVKKWRKQRQ++GF+  DK G+ +  FE GK+F+R GGKKRPGVSPGDRSGGK R  
Sbjct: 184 NIESVKKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRPT 243

Query: 252 GGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIR-GFNNGSLSSNKRRKR 301
              G    KKR+FRDSKFG GGRK + KQNTAETTND + GF  G  S NKR+KR
Sbjct: 244 SRMG---NKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293

[Close]

BLAST of Clc01G05490 vs. ExPASy Swiss-Prot
Match: Q9D903 (Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.2e-18
Identity = 90/291 (30.93%), Postives = 151/291 (51.89%), Query Frame = 0


Query: 25  DSDFESESESESEEEEED------------VELSEPSKNAIYNADGLLDKLGDISWPENV 84
           +SD ES++   S++E +D            V L +P K A+ +  GL   L +  +  ++
Sbjct: 8   ESDSESDACLASDQELQDAFSRGLLKPGLNVVLEKP-KKAVNDVSGLKQCLAE--FRRDL 67

Query: 85  EWIHKLSLDI----------------DQEKEVDVNDDLARELAFYTQALQGTRMALEKFQ 144
           EW+ +L + +                DQ+K V+  DD  RE++FY QA       L +  
Sbjct: 68  EWVERLDVTLGPVPEVSETQPTPQNQDQKKGVNPEDDFQREMSFYRQAQAAVLAVLPRLH 127

Query: 145 SLGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQK 204
            L +P  RP+DY+AEM K+D  M+K++ +L ++Q  ME++E+ ++ R  +K  K++Q + 
Sbjct: 128 QLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKKVQTEV 187

Query: 205 QKERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPG 264
            ++R ++K   + ++KK++K     GF+  DK   +DF   D K  ERS           
Sbjct: 188 LQKRQREKAHMMNAIKKYQK-----GFS--DK---LDFLEGDQKPVERSA---------- 247

Query: 265 DRSGGKARHGGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGF 288
            ++GGK   G    K P  KR +++ KFGFGG+K   K NT E+ +D+  F
Sbjct: 248 -KAGGK---GQQMSKGPNAKRRYKNQKFGFGGKKKGSKWNTKESYDDVSSF 271

[Close]

BLAST of Clc01G05490 vs. ExPASy Swiss-Prot
Match: P36049 (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EBP2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-17
Identity = 87/304 (28.62%), Postives = 147/304 (48.36%), Query Frame = 0


Query: 13  EDTIDDDNLGSEDSDF---ESESESESEEEEEDVELSEPS-----------KNAIYNADG 72
           ED  + +N   ED D    E   E E +EEE+DV LS+             K  + N   
Sbjct: 141 EDDSESENDSEEDEDVVAKEESEEKEEQEEEQDVPLSDVEFDSDADVVPHHKLTVNNTKA 200

Query: 73  LLDKLGDISWP---ENVEWIHKLSLDIDQEKEV-DVNDDLARELAFYTQALQGTRMALEK 132
           +   L  +  P    + +    ++ + + ++ + D+ DD  RELAFY Q+L    +A ++
Sbjct: 201 MKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFYKQSLDAVLVARDE 260

Query: 133 FQSLGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQA 192
            + L +PF RP DY+AEMVK+D HM+K+KG+L+ E    +  EE R+ R+ KK  K++Q 
Sbjct: 261 LKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGKQVQN 320

Query: 193 QKQKERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVS 252
              ++R  +K+E +E +K  + +R+ N     +    ++   E GK F+R          
Sbjct: 321 ATLQKRQLEKRETLEKIKSLKNKRKHNEIDHSEFNVGVEEEVE-GKRFDRG--------- 380

Query: 253 PGDRSGGKARHGGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSS 299
                             P  KR  +++K+G GG K  K++N A ++ D+ GF++  +  
Sbjct: 381 -----------------RPNGKRAAKNAKYGQGGMKRFKRKNDATSSADVSGFSSRKMKG 417

[Close]

BLAST of Clc01G05490 vs. ExPASy Swiss-Prot
Match: O13802 (Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ebp2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.6e-17
Identity = 97/302 (32.12%), Postives = 150/302 (49.67%), Query Frame = 0


Query: 4   SVKDASLFDEDTIDDDNLGSEDSDFESESESESEEEEEDVELSEPSKNAIYNADGLLDKL 63
           ++K   +   DT D +N  SE SD    S+ E  E EED +L    K AI N   L +  
Sbjct: 46  TIKSPIIETADTADQEN-ESEGSDEVELSDLEGIELEEDADLIRKRKLAINNTVALENIY 105

Query: 64  GDISWPENVEWIHKLSLDIDQEKEVD-VNDDLARELAFYTQALQGTRMALEKFQSLGLPF 123
             I +P+++ ++   ++   +   ++ V DDLARELAFY Q +   + A  K +   +  
Sbjct: 106 ERIKYPDDISFVENQAVTTKEPIIIENVEDDLARELAFYKQGVSSVKAAFAKLREANVLI 165

Query: 124 LRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKERAK 183
            RP DY+AEM+K+D HMEKV+  L+ E    + +++ +K RE KK  K++Q  KQ+ER +
Sbjct: 166 SRPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQR 225

Query: 184 QKKEEIESVKKWRKQRQKNGFAGGDKGGDMDF----SFEDGKTFERSGGKKRPGVSPGDR 243
           +KKE +E +   +++       GGD   + DF    S     TF++           G R
Sbjct: 226 EKKETLEKINLLKRKH-----TGGDLTTEDDFDIALSSASADTFKK-----------GSR 285

Query: 244 SGGKARHGGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRR 301
           S  K+R        P  KR  ++ K+GFGG K   K N  ++      F    L + K +
Sbjct: 286 S-TKSR------PQPNPKRQKKNEKYGFGGPKHRSKSNDLDSLAATE-FGRKGLKNIKSK 322

[Close]

BLAST of Clc01G05490 vs. ExPASy Swiss-Prot
Match: Q09958 (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 GN=C18A3.3 PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 3.9e-16
Identity = 102/318 (32.08%), Postives = 159/318 (50.00%), Query Frame = 0


Query: 4   SVKDASLFD-EDTIDDDNLGSEDSDFESESESESEEEE-----------EDVELSEPSKN 63
           S  D S FD ++ I++  + + D + E ES+ + +E E           + + +    K 
Sbjct: 25  SDSDGSEFDFDNAIEEKPMEAMDIE-EVESDGDDDERELQAAFAAGLLKDGLNIQVAKKR 84

Query: 64  AIYNADG-LLDKLGDISWPENVEWIHKLSL---DIDQEKEVDVNDDLARELAFYTQALQG 123
            I N    + +KL +I+  +++ W+  L +     + +K+V+ NDD  REL FY QA + 
Sbjct: 85  PIINKSAEMKEKLAEIT--KDLPWVETLEVVTPHSEMDKKVE-NDDFQRELNFYKQAEKA 144

Query: 124 TRMALEKFQSLGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKK 183
            ++A  +  +LG+  LRP+DYYAEM K+DTHM+KV+ RLL  Q   E  E  R+ RE KK
Sbjct: 145 VQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREEKK 204

Query: 184 LAKEIQAQKQKERAKQKKEEIESVKKWRK--QRQKNGFAGGDK--GGDMDFSFEDGKTFE 243
            A ++Q +    +  +KK   E+VKK +K  ++Q        K  G D D     G   +
Sbjct: 205 FAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQQLEDMLNNVKRHGLDQDDDAPTGAFGD 264

Query: 244 RSGGKKRPGVSPGDRSGGKARHGGGKGKNPKK----KRDFRDSKFGFGGRKSMKKQNTAE 298
           R GG+           GG  R G G+G + +     KR  +  KFG+GG+K   K+N  E
Sbjct: 265 RLGGR-----------GGAGRGGAGRGGSMRNAGELKRKLKSDKFGYGGKKKGMKRNNKE 324

[Close]

BLAST of Clc01G05490 vs. ExPASy TrEMBL
Match: A0A5D3DB33 (Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001370 PE=3 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.8e-141
Identity = 283/306 (92.48%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESE--SESEEEEEDVELSEPSKNAIYNADG 60
           MGVS+KDA   +EDT++DD+L SEDS+FESESE  SESEEEEEDVELSEPSKNAIYNADG
Sbjct: 10  MGVSIKDAEFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 69

Query: 61  LLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120
           LLDKLGDISWPENVEWIHKL+ DIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL
Sbjct: 70  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 129

Query: 121 GLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180
           GLPFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK
Sbjct: 130 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 189

Query: 181 ERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240
           ERAKQKKEEIESVKKWRKQRQKN FAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR
Sbjct: 190 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 249

Query: 241 SGGKARH---GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSN 300
           SGGKARH   GGGKGKN KKKRDFRDSKFGFGGRKS+KKQNTAETTNDIRGFNNGSLS+N
Sbjct: 250 SGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSLSNN 309

Query: 301 KRRKRS 302
           KRRK+S
Sbjct: 310 KRRKKS 315

[Close]

BLAST of Clc01G05490 vs. ExPASy TrEMBL
Match: A0A1S3CT69 (probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC103504670 PE=3 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.8e-141
Identity = 283/306 (92.48%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESE--SESEEEEEDVELSEPSKNAIYNADG 60
           MGVS+KDA   +EDT++DD+L SEDS+FESESE  SESEEEEEDVELSEPSKNAIYNADG
Sbjct: 1   MGVSIKDADFLNEDTVEDDDLSSEDSEFESESESGSESEEEEEDVELSEPSKNAIYNADG 60

Query: 61  LLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120
           LLDKLGDISWPENVEWIHKL+ DIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL
Sbjct: 61  LLDKLGDISWPENVEWIHKLTFDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSL 120

Query: 121 GLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180
           GLPFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK
Sbjct: 121 GLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQK 180

Query: 181 ERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240
           ERAKQKKEEIESVKKWRKQRQKN FAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR
Sbjct: 181 ERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDR 240

Query: 241 SGGKARH---GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSN 300
           SGGKARH   GGGKGKN KKKRDFRDSKFGFGGRKS+KKQNTAETTNDIRGFNNGSLS+N
Sbjct: 241 SGGKARHGGGGGGKGKNLKKKRDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNNGSLSNN 300

Query: 301 KRRKRS 302
           KRRK+S
Sbjct: 301 KRRKKS 306

[Close]

BLAST of Clc01G05490 vs. ExPASy TrEMBL
Match: A0A0A0KL02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169110 PE=3 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 9.2e-138
Identity = 279/312 (89.42%), Postives = 291/312 (93.27%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESESES---EEEEEDVELSEPSKNAIYNAD 60
           MGVS+KDAS  +EDT++D +  SEDS+FESESES S   EEEEEDVELSEPSKNAIYNAD
Sbjct: 1   MGVSIKDASFLNEDTVEDGDFSSEDSEFESESESGSGSEEEEEEDVELSEPSKNAIYNAD 60

Query: 61  GLLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQS 120
           GLLDKLGDISWPENVEWIHKL+ DI+QEKEVDVNDDL RELAFYTQALQGTRMALEKFQS
Sbjct: 61  GLLDKLGDISWPENVEWIHKLTFDIEQEKEVDVNDDLTRELAFYTQALQGTRMALEKFQS 120

Query: 121 LGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ 180
           LGLPFLRPSDYYAEMVKTDTHM+KVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ
Sbjct: 121 LGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ 180

Query: 181 KERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD 240
           KERAKQKKEEIESVKKWRKQRQKN FAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD
Sbjct: 181 KERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD 240

Query: 241 RSGGKARH--------GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNN 300
           RSGGKARH        GGGKGK PKKKRDFRDSKFGFGGRKS+KKQNTA+TTNDIRGFNN
Sbjct: 241 RSGGKARHGGGGGGGGGGGKGKIPKKKRDFRDSKFGFGGRKSLKKQNTADTTNDIRGFNN 300

Query: 301 GSLSSNKRRKRS 302
           GSLSSNKRRK+S
Sbjct: 301 GSLSSNKRRKKS 312

[Close]

BLAST of Clc01G05490 vs. ExPASy TrEMBL
Match: A0A6J1EEP4 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111433474 PE=3 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.1e-130
Identity = 270/308 (87.66%), Postives = 285/308 (92.53%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDF------ESESESESEEEEEDVELSEPSKNAIY 60
           MGVS KDA   +EDT++DD+LG+EDSDF      ESESESES EEEE+V+LSEPSK AIY
Sbjct: 1   MGVSDKDARFLNEDTMEDDDLGNEDSDFGSESESESESESESGEEEEEVKLSEPSKTAIY 60

Query: 61  NADGLLDKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120
           NADGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK
Sbjct: 61  NADGLLDKLEDISWPKNVEWIHRLCLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEK 120

Query: 121 FQSLGLPFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQA 180
           FQSLGLPFLRPSDYYAEMVKTDTHM KVKGRLL+EQRKMEEAEERRKAREAKKLAKEIQA
Sbjct: 121 FQSLGLPFLRPSDYYAEMVKTDTHMGKVKGRLLAEQRKMEEAEERRKAREAKKLAKEIQA 180

Query: 181 QKQKERAKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVS 240
           QK KERAKQKKEEIESVKKWRKQRQK+GFAGGDKGGDM+ SFEDGK FERSGGKKRPGVS
Sbjct: 181 QKLKERAKQKKEEIESVKKWRKQRQKSGFAGGDKGGDMELSFEDGKAFERSGGKKRPGVS 240

Query: 241 PGDRSGGKARH-GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLS 300
           PGDRSGGKARH  GGKGKN KKK+DFRDSKFGFGGRKS+KKQNTAETTNDIRGFN+ SL 
Sbjct: 241 PGDRSGGKARHRDGGKGKNLKKKKDFRDSKFGFGGRKSLKKQNTAETTNDIRGFNSDSLL 300

Query: 301 SNKRRKRS 302
           SNKRRKRS
Sbjct: 301 SNKRRKRS 308

[Close]

BLAST of Clc01G05490 vs. ExPASy TrEMBL
Match: A0A6J1H264 (probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111459763 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 9.2e-130
Identity = 271/302 (89.74%), Postives = 283/302 (93.71%), Query Frame = 0


Query: 1   MGVSVKDASLFDEDTIDDDNLGSEDSDFESESESESEEEEEDVELSEPSKNAIYNADGLL 60
           MGVS +  S  +EDT++DD+L SEDSDF SESESES EEEEDV+LSEPSKNAIYNADGLL
Sbjct: 1   MGVSDEKDSFLNEDTMEDDDLDSEDSDFGSESESES-EEEEDVKLSEPSKNAIYNADGLL 60

Query: 61  DKLGDISWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGL 120
           DKLGDISWPENV WIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGL
Sbjct: 61  DKLGDISWPENVGWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGL 120

Query: 121 PFLRPSDYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKER 180
           PFLRP DYYAEMVKTDTHM KVKGRLL EQ+KMEEAEERRKAREAKKLAKEIQAQK KER
Sbjct: 121 PFLRPPDYYAEMVKTDTHMVKVKGRLLMEQKKMEEAEERRKAREAKKLAKEIQAQKLKER 180

Query: 181 AKQKKEEIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRSG 240
           AKQKKEEIESVKKWRKQRQK+GF+  DKGG+MD SFEDGK F+RSGGKKRPGVSPGDRSG
Sbjct: 181 AKQKKEEIESVKKWRKQRQKSGFS--DKGGEMDLSFEDGKAFDRSGGKKRPGVSPGDRSG 240

Query: 241 GKARH-GGGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRRK 300
           GKARH GGGKGKNP KKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRRK
Sbjct: 241 GKARHGGGGKGKNP-KKRDFRDSKFGFGGRKSMKKQNTAETTNDIRGFNNGSLSSNKRRK 298

Query: 301 RS 302
           +S
Sbjct: 301 KS 298

[Close]

BLAST of Clc01G05490 vs. TAIR 10
Match: AT3G22660.1 (rRNA processing protein-related )

HSP 1 Score: 312.8 bits (800), Expect = 3.1e-85
Identity = 188/295 (63.73%), Postives = 231/295 (78.31%), Query Frame = 0


Query: 12  DEDTIDDD--NLGSED--SDFESESESESEEEEEDVE-LSEPSKNAIYNADGLLDKLGDI 71
           +ED + DD  N+  ED  +D E+ES S+S+ E E  E L+EP+K AIYN DGLLDKL DI
Sbjct: 4   EEDIVSDDEMNMIDEDDATDSEAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQDI 63

Query: 72  SWPENVEWIHKLSLDIDQEKEVDVNDDLARELAFYTQALQGTRMALEKFQSLGLPFLRPS 131
           SWPE+V+W HKL+++IDQ   VDVNDDLARE AFYTQAL+GTR A  K   +G+ FLRP+
Sbjct: 64  SWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPA 123

Query: 132 DYYAEMVKTDTHMEKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQKERAKQKKE 191
           +YYAEMVK+D HMEKVK RLL E++++EE+EERRKAR+ K++AKE+Q+QK KERAK+KK+
Sbjct: 124 NYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKD 183

Query: 192 EIESVKKWRKQRQKNGFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGDRSGGKARHG 251
            IESVKKWRKQRQ++GF+  DK G+ +  FE GK+F+R GGKKRPGVSPGDRSGGK R  
Sbjct: 184 NIESVKKWRKQRQQSGFS--DKAGEPELDFESGKSFQRGGGKKRPGVSPGDRSGGKGRPT 243

Query: 252 GGKGKNPKKKRDFRDSKFGFGGRKSMKKQNTAETTNDIR-GFNNGSLSSNKRRKR 301
              G    KKR+FRDSKFG GGRK + KQNTAETTND + GF  G  S NKR+KR
Sbjct: 244 SRMG---NKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293

The following BLAST results are available for this feature:

BLAST of Clc01G05490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876320.1	1.3e-141	94.70	probable rRNA-processing protein EBP2 homolog [Benincasa hispida]	[more]
XP_008467285.1	1.4e-140	92.48	PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo]	[more]
KAA0055124.1	1.4e-140	92.48	putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa] >T...	[more]
XP_004143659.2	1.9e-137	89.42	probable rRNA-processing protein EBP2 homolog [Cucumis sativus] >KGN50375.1 hypo...	[more]
XP_022926294.1	2.2e-130	87.66	probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]	[more]

BLAST of Clc01G05490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUJ5	4.3e-84	63.73	Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9D903	9.2e-18	30.93	Probable rRNA-processing protein EBP2 OS=Mus musculus OX=10090 GN=Ebna1bp2 PE=2 ...	[more]
P36049	1.2e-17	28.62	rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]
O13802	4.6e-17	32.12	Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe (strain 972 /...	[more]
Q09958	3.9e-16	32.08	Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans OX=6239 ...	[more]

BLAST of Clc01G05490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB33	6.8e-141	92.48	Putative rRNA-processing protein EBP2-like protein OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CT69	6.8e-141	92.48	probable rRNA-processing protein EBP2 homolog OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A0A0KL02	9.2e-138	89.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G169110 PE=3 SV=1	[more]
A0A6J1EEP4	1.1e-130	87.66	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1H264	9.2e-130	89.74	probable rRNA-processing protein EBP2 homolog OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Clc01G05490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22660.1	3.1e-85	63.73	rRNA processing protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	PANTHER	PTHR13028:SF2	BNAA01G24550D PROTEIN	coord: 24..300
IPR008610	Eukaryotic rRNA processing	PFAM	PF05890	Ebp2	coord: 25..297 e-value: 1.5E-75 score: 254.3
IPR008610	Eukaryotic rRNA processing	PANTHER	PTHR13028	RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED	coord: 24..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G05490.1	Clc01G05490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0034399	nuclear periphery
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor