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Clc01G04250 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATAATTCAACTTCAATAGAGGATTTTGAGAGTGGAGAACTCACGAGAGAGTGTGAAGTTGTTTAATAATATTTGTACCTTTTTATTTGCTAATTAATTTAATAAATTTGATTAAGAGTTTGAAAATTAGATAAATGGTTTTAATAAGAAAAATTATTGAACACCGAAGCAACGCCACCGTAAAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATCTGTAATTCAATCAAGCTCGATTCTCGCAAAATTTCTCGGCCAAGAACCATTTCCTTTTTCGTTATCGGTCAATTGGGTCCGTTTTTTACTCTCACCTGGATTCCTACCTCGATTAATTTTGCTCAATTCTCTCCTAGGTTTGTTCTTTTTCCCTCCATGATCCTTGATTATCTTAGTTAGTTCTTCTCTCAATTCAATCATCTACTAGTTAATCTGCTGCGTTTCTTTTTCCTTAATTCGCCGATTGATTGTTTGGTTCAATTCCCTGAGTTTAATTTCGTTTTATTTACTTTTCTTTTCTTGTTGTTCGTTGATTGGGAAAGTTGTAAGAGTTTGTTGGGGGTGTCGAGTTTAGCGGACTGGTGAAATTCTAGGTGGTTTTAATTGATAAGTGTGCTATTCTGTTGGTCACGATTATGATTATACAGTTAATTATGGCGATTTTTAGCTTTGTTAGTTGGGTTCTGATTGTAATATTCATATTTTCCGTTTTGCCAGTTTCCCAACTTTCTAAAATTCTGGGGTTGCGTGTTTTTTTTTTTTTTTTTTTTTTTAAATTAAAATTTGAGAGTCTGACGTTCGTGGATGGATTGTAGTTTCAAGACTGATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGGTAGTCTTCTACTCCATGTTTCTAAACGCTTTTCTTTTTCCGCTTGGTATTATATTAAATCCATTTTGTAAGACAAGAACTGATAAATTTTCCATGTTTATTTTACTAGAGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGGTAAGAAATGAATTTATTTCATTACCGTGATTTGATTGGCTATTGGTTATCATCAACTTGATATTCAGATATTGTTTTGCCAAAGCTTTGATGTTCTTCTTAACCTCCTTCGATTAAGTAACGAGTCAAATTTGTTCTGATTTTCACTATCATCTATTGTCAGCATCCTTTTTTTAGCTGTCATTTGATAAGGAAGCAACCAGCTATTATTATTATTATTATTATTTAGTTCAACAACACGTGGGATTGGAGATTCGAATCTCTGACTTGTTGGTCGAGGTGTATGTCTAAACCAGTTGAACTATGCTTAGATTGACAGGAAACGATTAGTTGTTGGTAATCTTGTTTTTCTGGACAACAGAGGCTGATGATTATGTTGTTACTGATTTAGCAGTTTGTTTATAATGATAAGAAGTAGTGAGGAAGTGTGTTTTAAGAGTAAAATGTCTCAAAATGAAGGCTGTTCATCTGTTGTATTTTTGTTTGCTCATGTGTTTCTGTGTTCCATCAGTTATTGCTTGATTATTTAATTCTGTTCTTATTGTTTCAAGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATCGATAAGAAGAAGTAAGAATCACCAACATTCATTTCACAGTCGTCTGTTGTATTTATTTATTTATTTATTTTTATATTATATTGAAGTTGGAGTTAATTTTGAAAAGATATCTTTTGGTGAAGTATTCTGTGTTAACTCTTTTTCGTCAAAGGAAGTATTATATAGCTACTGGTAGCTGATAGACTTGAATTTTCTTGCTTCTGTGTTAGAATTTATGTTCATTGACTGACTGCATTTTAAGAGAATTTTCTCTTTCTGATTGATGCTTGATGAGCTGAATACACTGATGCGCGCACACATACTGTAGCCTTACTAAAAGCTCTTCTTCATCTCTTTGAAAGTGGCCTTTATTTAACTTTTCAAATCATGTTTCTGTTCTTTCTCATAGTTCTGTTGTCAATTTGCCTTGTGCATATGATTCATTTCAAAACCACAAGGGGGAGAATCTCCGATAGACAGTTCACAATGCCTTCACTTCTTTCTCTTTCTATACCTAACATTTTGACGTAACGACTGCAGATACCTAGTTCCAGCAGACCTTACTGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTTATCTTCGTGGACAATGTCCTCCCTCCTACAGGTACATCATTTTCCTCTAAAAATTATTGTAGGATATGGCTAGGAGTGGACCACTTTTGAAAATGAAAGACCATCTCATAAACAAGTTCATTTAACAGAGTTCGATAACATATCAAGAACGTTCTTTCTCGTCTGCTTCCTGGAATAAGTCTTGTGATTATGATCAATCATGAAGGTCACGCTGTTAGTTTTGACATAATTGGTACACATAGCACCCACACATAACAATTTTGTTAGAGATAACGGATACTTTAACAAAAGGGGCATGTTTAAAATTTAGAAAACTATATTGGTGTTTAAAACCGAAACTTAAAATACGAGTTTGATATGCTAGAAACAAGAACTATAACTTGTTGTATTCAACTTGCCTGAACAAACCACATATTTTTTCCTTCTTAAAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGTGGTAGCTGGCTTGTGTGCGAGACCTGATTGTTCTTCATCTGTTACACTTACATCTTAGATTTTCGCTTCGTTGCTACACCGTCATCATCTTCTTCTTCTGTTCTCCCTGCCTCTTCCTTTCGCTGCTTGTTGTTCTTCCAGTTCAAGGATTCTGGCAAGTGATATCCTGTACAGCTCTACATAATGAATAAAAATTGTGAAAACATTTCCACACCAAAAAGTTCTTGCTTCAAATATTGGCTTTGTAGTTCCTTTTGCCCCCAATTTTTTTGTGGGGTTTTCCTTCTGTTTATATGCCTGTAAAGATAAGATCTCATAACAAAATCTATTTTTCTCATTAAAAAAATATTCCATCTACTCTTATAAATAGCATCCCCAATATTATTCTCATTACTATTTTTTTT TGATAATTCAACTTCAATAGAGGATTTTGAGAGTGGAGAACTCACGAGAGAGTGTGAAGTTGTTTAATAATATTTGTACCTTTTTATTTGCTAATTAATTTAATAAATTTGATTAAGAGTTTGAAAATTAGATAAATGGTTTTAATAAGAAAAATTATTGAACACCGAAGCAACGCCACCGTAAAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATCTGTAATTCAATCAAGCTCGATTCTCGCAAAATTTCTCGGCCAAGAACCATTTCCTTTTTCGTTATCGGTCAATTGGGTCCGTTTTTTACTCTCACCTGGATTCCTACCTCGATTAATTTTGCTCAATTCTCTCCTAGTTTCAAGACTGATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATCGATAAGAAGAAATACCTAGTTCCAGCAGACCTTACTGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTTATCTTCGTGGACAATGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGTGGTAGCTGGCTTGTGTGCGAGACCTGATTGTTCTTCATCTGTTACACTTACATCTTAGATTTTCGCTTCGTTGCTACACCGTCATCATCTTCTTCTTCTGTTCTCCCTGCCTCTTCCTTTCGCTGCTTGTTGTTCTTCCAGTTCAAGGATTCTGGCAAGTGATATCCTGTACAGCTCTACATAATGAATAAAAATTGTGAAAACATTTCCACACCAAAAAGTTCTTGCTTCAAATATTGGCTTTGTAGTTCCTTTTGCCCCCAATTTTTTTGTGGGGTTTTCCTTCTGTTTATATGCCTGTAAAGATAAGATCTCATAACAAAATCTATTTTTCTCATTAAAAAAATATTCCATCTACTCTTATAAATAGCATCCCCAATATTATTCTCATTACTATTTTTTTT ATGGTTTTAATAAGAAAAATTATTGAACACCGAAGCAACGCCACCGTAAAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATCTGTAATTCAATCAAGCTCGATTCTCGCAAAATTTCTCGGCCAAGAACCATTTCCTTTTTCGTTATCGGTCAATTGGGTCCGTTTTTTACTCTCACCTGGATTCCTACCTCGATTAATTTTGCTCAATTCTCTCCTAGTTTCAAGACTGATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATCGATAAGAAGAAATACCTAGTTCCAGCAGACCTTACTGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTTATCTTCGTGGACAATGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGTGGTAG MVLIRKIIEHRSNATVKASLSLSLSLSLSLLSVIQSSSILAKFLGQEPFPFSLSVNWVRFLLSPGFLPRLILLNSLLVSRLMAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW Homology
BLAST of Clc01G04250 vs. NCBI nr
Match: XP_004152407.1 (autophagy-related protein 8f [Cucumis sativus] >XP_004152408.1 autophagy-related protein 8f [Cucumis sativus] >XP_008437098.1 PREDICTED: autophagy-related protein 8f [Cucumis melo] >XP_031742328.1 autophagy-related protein 8f [Cucumis sativus] >XP_038876330.1 autophagy-related protein 8f isoform X1 [Benincasa hispida] >XP_038876331.1 autophagy-related protein 8f isoform X1 [Benincasa hispida] >XP_038876332.1 autophagy-related protein 8f isoform X1 [Benincasa hispida] >KAA0039709.1 autophagy-related protein 8f [Cucumis melo var. makuwa] >KGN50246.1 hypothetical protein Csa_000352 [Cucumis sativus]) HSP 1 Score: 236.1 bits (601), Expect = 2.6e-58 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. NCBI nr
Match: KAG6579417.1 (Autophagy-related protein 8f, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 234.2 bits (596), Expect = 9.8e-58 Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0
BLAST of Clc01G04250 vs. NCBI nr
Match: XP_022154834.1 (autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-related protein 8f [Momordica charantia]) HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. NCBI nr
Match: XP_022969729.1 (autophagy-related protein 8f [Cucurbita maxima]) HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. NCBI nr
Match: XP_022922412.1 (autophagy-related protein 8f [Cucurbita moschata] >XP_023549494.1 autophagy-related protein 8f [Cucurbita pepo subsp. pepo] >KAG7016894.1 Autophagy-related protein 8f [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: Q8VYK7 (Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 2.1e-55 Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: M1C146 (Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 4.9e-52 Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: Q9SL04 (Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 2.4e-51 Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: A2XXR7 (Autophagy-related protein 8B OS=Oryza sativa subsp. indica OX=39946 GN=ATG8B PE=3 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 7.1e-51 Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: Q7XPR1 (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8B PE=3 SV=2) HSP 1 Score: 201.8 bits (512), Expect = 7.1e-51 Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A5A7TEP4 (Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00400 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A0A0KR95 (Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_5G161950 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A1S3ASU6 (Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103482618 PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A6J1DKS3 (Autophagy-related protein OS=Momordica charantia OX=3673 GN=LOC111021994 PE=3 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A6J1I3I5 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111468839 PE=3 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Clc01G04250 vs. TAIR 10
Match: AT4G16520.1 (Ubiquitin-like superfamily protein ) HSP 1 Score: 216.9 bits (551), Expect = 1.5e-56 Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Clc01G04250 vs. TAIR 10
Match: AT4G16520.2 (Ubiquitin-like superfamily protein ) HSP 1 Score: 216.9 bits (551), Expect = 1.5e-56 Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Clc01G04250 vs. TAIR 10
Match: AT2G05630.1 (Ubiquitin-like superfamily protein ) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-52 Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = 0
BLAST of Clc01G04250 vs. TAIR 10
Match: AT2G45170.1 (AUTOPHAGY 8E ) HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51 Identity = 96/114 (84.21%), Postives = 108/114 (94.74%), Query Frame = 0
BLAST of Clc01G04250 vs. TAIR 10
Match: AT2G45170.2 (AUTOPHAGY 8E ) HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51 Identity = 96/114 (84.21%), Postives = 108/114 (94.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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