Clc01G04250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G04250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Autophagy-related protein
Location	ClcChr01: 4086671 .. 4089831 (-)
RNA-Seq Expression	Clc01G04250
Synteny	Clc01G04250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATAATTCAACTTCAATAGAGGATTTTGAGAGTGGAGAACTCACGAGAGAGTGTGAAGTTGTTTAATAATATTTGTACCTTTTTATTTGCTAATTAATTTAATAAATTTGATTAAGAGTTTGAAAATTAGATAAATGGTTTTAATAAGAAAAATTATTGAACACCGAAGCAACGCCACCGTAAAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATCTGTAATTCAATCAAGCTCGATTCTCGCAAAATTTCTCGGCCAAGAACCATTTCCTTTTTCGTTATCGGTCAATTGGGTCCGTTTTTTACTCTCACCTGGATTCCTACCTCGATTAATTTTGCTCAATTCTCTCCTAGGTTTGTTCTTTTTCCCTCCATGATCCTTGATTATCTTAGTTAGTTCTTCTCTCAATTCAATCATCTACTAGTTAATCTGCTGCGTTTCTTTTTCCTTAATTCGCCGATTGATTGTTTGGTTCAATTCCCTGAGTTTAATTTCGTTTTATTTACTTTTCTTTTCTTGTTGTTCGTTGATTGGGAAAGTTGTAAGAGTTTGTTGGGGGTGTCGAGTTTAGCGGACTGGTGAAATTCTAGGTGGTTTTAATTGATAAGTGTGCTATTCTGTTGGTCACGATTATGATTATACAGTTAATTATGGCGATTTTTAGCTTTGTTAGTTGGGTTCTGATTGTAATATTCATATTTTCCGTTTTGCCAGTTTCCCAACTTTCTAAAATTCTGGGGTTGCGTGTTTTTTTTTTTTTTTTTTTTTTTAAATTAAAATTTGAGAGTCTGACGTTCGTGGATGGATTGTAGTTTCAAGACTGATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGGTAGTCTTCTACTCCATGTTTCTAAACGCTTTTCTTTTTCCGCTTGGTATTATATTAAATCCATTTTGTAAGACAAGAACTGATAAATTTTCCATGTTTATTTTACTAGAGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGGTAAGAAATGAATTTATTTCATTACCGTGATTTGATTGGCTATTGGTTATCATCAACTTGATATTCAGATATTGTTTTGCCAAAGCTTTGATGTTCTTCTTAACCTCCTTCGATTAAGTAACGAGTCAAATTTGTTCTGATTTTCACTATCATCTATTGTCAGCATCCTTTTTTTAGCTGTCATTTGATAAGGAAGCAACCAGCTATTATTATTATTATTATTATTTAGTTCAACAACACGTGGGATTGGAGATTCGAATCTCTGACTTGTTGGTCGAGGTGTATGTCTAAACCAGTTGAACTATGCTTAGATTGACAGGAAACGATTAGTTGTTGGTAATCTTGTTTTTCTGGACAACAGAGGCTGATGATTATGTTGTTACTGATTTAGCAGTTTGTTTATAATGATAAGAAGTAGTGAGGAAGTGTGTTTTAAGAGTAAAATGTCTCAAAATGAAGGCTGTTCATCTGTTGTATTTTTGTTTGCTCATGTGTTTCTGTGTTCCATCAGTTATTGCTTGATTATTTAATTCTGTTCTTATTGTTTCAAGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATCGATAAGAAGAAGTAAGAATCACCAACATTCATTTCACAGTCGTCTGTTGTATTTATTTATTTATTTATTTTTATATTATATTGAAGTTGGAGTTAATTTTGAAAAGATATCTTTTGGTGAAGTATTCTGTGTTAACTCTTTTTCGTCAAAGGAAGTATTATATAGCTACTGGTAGCTGATAGACTTGAATTTTCTTGCTTCTGTGTTAGAATTTATGTTCATTGACTGACTGCATTTTAAGAGAATTTTCTCTTTCTGATTGATGCTTGATGAGCTGAATACACTGATGCGCGCACACATACTGTAGCCTTACTAAAAGCTCTTCTTCATCTCTTTGAAAGTGGCCTTTATTTAACTTTTCAAATCATGTTTCTGTTCTTTCTCATAGTTCTGTTGTCAATTTGCCTTGTGCATATGATTCATTTCAAAACCACAAGGGGGAGAATCTCCGATAGACAGTTCACAATGCCTTCACTTCTTTCTCTTTCTATACCTAACATTTTGACGTAACGACTGCAGATACCTAGTTCCAGCAGACCTTACTGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTTATCTTCGTGGACAATGTCCTCCCTCCTACAGGTACATCATTTTCCTCTAAAAATTATTGTAGGATATGGCTAGGAGTGGACCACTTTTGAAAATGAAAGACCATCTCATAAACAAGTTCATTTAACAGAGTTCGATAACATATCAAGAACGTTCTTTCTCGTCTGCTTCCTGGAATAAGTCTTGTGATTATGATCAATCATGAAGGTCACGCTGTTAGTTTTGACATAATTGGTACACATAGCACCCACACATAACAATTTTGTTAGAGATAACGGATACTTTAACAAAAGGGGCATGTTTAAAATTTAGAAAACTATATTGGTGTTTAAAACCGAAACTTAAAATACGAGTTTGATATGCTAGAAACAAGAACTATAACTTGTTGTATTCAACTTGCCTGAACAAACCACATATTTTTTCCTTCTTAAAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGTGGTAGCTGGCTTGTGTGCGAGACCTGATTGTTCTTCATCTGTTACACTTACATCTTAGATTTTCGCTTCGTTGCTACACCGTCATCATCTTCTTCTTCTGTTCTCCCTGCCTCTTCCTTTCGCTGCTTGTTGTTCTTCCAGTTCAAGGATTCTGGCAAGTGATATCCTGTACAGCTCTACATAATGAATAAAAATTGTGAAAACATTTCCACACCAAAAAGTTCTTGCTTCAAATATTGGCTTTGTAGTTCCTTTTGCCCCCAATTTTTTTGTGGGGTTTTCCTTCTGTTTATATGCCTGTAAAGATAAGATCTCATAACAAAATCTATTTTTCTCATTAAAAAAATATTCCATCTACTCTTATAAATAGCATCCCCAATATTATTCTCATTACTATTTTTTTT

mRNA sequence

TGATAATTCAACTTCAATAGAGGATTTTGAGAGTGGAGAACTCACGAGAGAGTGTGAAGTTGTTTAATAATATTTGTACCTTTTTATTTGCTAATTAATTTAATAAATTTGATTAAGAGTTTGAAAATTAGATAAATGGTTTTAATAAGAAAAATTATTGAACACCGAAGCAACGCCACCGTAAAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATCTGTAATTCAATCAAGCTCGATTCTCGCAAAATTTCTCGGCCAAGAACCATTTCCTTTTTCGTTATCGGTCAATTGGGTCCGTTTTTTACTCTCACCTGGATTCCTACCTCGATTAATTTTGCTCAATTCTCTCCTAGTTTCAAGACTGATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATCGATAAGAAGAAATACCTAGTTCCAGCAGACCTTACTGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTTATCTTCGTGGACAATGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGTGGTAGCTGGCTTGTGTGCGAGACCTGATTGTTCTTCATCTGTTACACTTACATCTTAGATTTTCGCTTCGTTGCTACACCGTCATCATCTTCTTCTTCTGTTCTCCCTGCCTCTTCCTTTCGCTGCTTGTTGTTCTTCCAGTTCAAGGATTCTGGCAAGTGATATCCTGTACAGCTCTACATAATGAATAAAAATTGTGAAAACATTTCCACACCAAAAAGTTCTTGCTTCAAATATTGGCTTTGTAGTTCCTTTTGCCCCCAATTTTTTTGTGGGGTTTTCCTTCTGTTTATATGCCTGTAAAGATAAGATCTCATAACAAAATCTATTTTTCTCATTAAAAAAATATTCCATCTACTCTTATAAATAGCATCCCCAATATTATTCTCATTACTATTTTTTTT

Coding sequence (CDS)

ATGGTTTTAATAAGAAAAATTATTGAACACCGAAGCAACGCCACCGTAAAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATCTGTAATTCAATCAAGCTCGATTCTCGCAAAATTTCTCGGCCAAGAACCATTTCCTTTTTCGTTATCGGTCAATTGGGTCCGTTTTTTACTCTCACCTGGATTCCTACCTCGATTAATTTTGCTCAATTCTCTCCTAGTTTCAAGACTGATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGAGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGGTTATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATCGATAAGAAGAAATACCTAGTTCCAGCAGACCTTACTGTGGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCAGAGAAAGCGATCTTTATCTTCGTGGACAATGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGTGGTAG

Protein sequence

MVLIRKIIEHRSNATVKASLSLSLSLSLSLLSVIQSSSILAKFLGQEPFPFSLSVNWVRFLLSPGFLPRLILLNSLLVSRLMAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW

Homology

[Close]

BLAST of Clc01G04250 vs. NCBI nr
Match: XP_004152407.1 (autophagy-related protein 8f [Cucumis sativus] >XP_004152408.1 autophagy-related protein 8f [Cucumis sativus] >XP_008437098.1 PREDICTED: autophagy-related protein 8f [Cucumis melo] >XP_031742328.1 autophagy-related protein 8f [Cucumis sativus] >XP_038876330.1 autophagy-related protein 8f isoform X1 [Benincasa hispida] >XP_038876331.1 autophagy-related protein 8f isoform X1 [Benincasa hispida] >XP_038876332.1 autophagy-related protein 8f isoform X1 [Benincasa hispida] >KAA0039709.1 autophagy-related protein 8f [Cucumis melo var. makuwa] >KGN50246.1 hypothetical protein Csa_000352 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 2.6e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 118

[Close]

BLAST of Clc01G04250 vs. NCBI nr
Match: KAG6579417.1 (Autophagy-related protein 8f, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234.2 bits (596), Expect = 9.8e-58
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 76  LLVSRLMAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPA 135
           L +S LMAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPA
Sbjct: 29  LSLSALMAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPA 88

Query: 136 DLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 195
           DLTVGQFVYVIR+RIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN
Sbjct: 89  DLTVGQFVYVIRRRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 148

Query: 196 TFGW 200
           TFG+
Sbjct: 149 TFGF 152

[Close]

BLAST of Clc01G04250 vs. NCBI nr
Match: XP_022154834.1 (autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-related protein 8f [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. NCBI nr
Match: XP_022969729.1 (autophagy-related protein 8f [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. NCBI nr
Match: XP_022922412.1 (autophagy-related protein 8f [Cucurbita moschata] >XP_023549494.1 autophagy-related protein 8f [Cucurbita pepo subsp. pepo] >KAG7016894.1 Autophagy-related protein 8f [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: Q8VYK7 (Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-55
Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKS FKQEHDLEKR+AEAARIREKYPDRIPVIVEKAE+SDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLS EKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: M1C146 (Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.9e-52
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKS FK EH LE+R+AEAARIREKYPDRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           FVYV+RKRIKLS EKAIFIFV N+LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEHKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: Q9SL04 (Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.4e-51
Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MA S FK EH LEKR+AEAARIREKYPDRIPVIVE+AE+SD+P ID+KKYLVPADLTVGQ
Sbjct: 1   MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           FVYV+RKRIKLSPEKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

[Close]

BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: A2XXR7 (Autophagy-related protein 8B OS=Oryza sativa subsp. indica OX=39946 GN=ATG8B PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-51
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKS FK +H LE+R+AEA RIREKY DRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           FVYV+RKRIKLSPEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of Clc01G04250 vs. ExPASy Swiss-Prot
Match: Q7XPR1 (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8B PE=3 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-51
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKS FK +H LE+R+AEA RIREKY DRIPVIVEKAERSDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           FVYV+RKRIKLSPEKAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117

[Close]

BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A5A7TEP4 (Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold558G00400 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 118

[Close]

BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A0A0KR95 (Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_5G161950 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 118

[Close]

BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A1S3ASU6 (Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103482618 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.3e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 118

[Close]

BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A6J1DKS3 (Autophagy-related protein OS=Momordica charantia OX=3673 GN=LOC111021994 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. ExPASy TrEMBL
Match: A0A6J1I3I5 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111468839 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. TAIR 10
Match: AT4G16520.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-56
Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKS FKQEHDLEKR+AEAARIREKYPDRIPVIVEKAE+SDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLS EKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. TAIR 10
Match: AT4G16520.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-56
Identity = 107/118 (90.68%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MAKS FKQEHDLEKR+AEAARIREKYPDRIPVIVEKAE+SDIP+IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGW 200
           FVYVIRKRIKLS EKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG+
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGF 118

[Close]

BLAST of Clc01G04250 vs. TAIR 10
Match: AT2G05630.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-52
Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 82  MAKSYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQ 141
           MA S FK EH LEKR+AEAARIREKYPDRIPVIVE+AE+SD+P ID+KKYLVPADLTVGQ
Sbjct: 1   MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQ 60

Query: 142 FVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           FVYV+RKRIKLSPEKAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct: 61  FVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117

[Close]

BLAST of Clc01G04250 vs. TAIR 10
Match: AT2G45170.1 (AUTOPHAGY 8E )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 96/114 (84.21%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 85  SYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVY 144
           S FK ++D EKRKAEA RIREKYPDRIPVIVEKAE+S++P+IDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 145 VIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           VIRKRIKLS EKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

[Close]

BLAST of Clc01G04250 vs. TAIR 10
Match: AT2G45170.2 (AUTOPHAGY 8E )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 96/114 (84.21%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 85  SYFKQEHDLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVY 144
           S FK ++D EKRKAEA RIREKYPDRIPVIVEKAE+S++P+IDKKKYLVP+DLTVGQFVY
Sbjct: 5   SIFKMDNDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVY 64

Query: 145 VIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 199
           VIRKRIKLS EKAIFIFVDNVLPPTG +MS++YE+KKDEDGFLY+TYSGENTFG
Sbjct: 65  VIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118

The following BLAST results are available for this feature:

BLAST of Clc01G04250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152407.1	2.6e-58	100.00	autophagy-related protein 8f [Cucumis sativus] >XP_004152408.1 autophagy-related...	[more]
KAG6579417.1	9.8e-58	95.97	Autophagy-related protein 8f, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022154834.1	3.7e-57	99.15	autophagy-related protein 8f [Momordica charantia] >XP_022154835.1 autophagy-rel...	[more]
XP_022969729.1	3.7e-57	99.15	autophagy-related protein 8f [Cucurbita maxima]	[more]
XP_022922412.1	3.7e-57	99.15	autophagy-related protein 8f [Cucurbita moschata] >XP_023549494.1 autophagy-rela...	[more]

BLAST of Clc01G04250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYK7	2.1e-55	90.68	Autophagy-related protein 8f OS=Arabidopsis thaliana OX=3702 GN=ATG8F PE=1 SV=1	[more]
M1C146	4.9e-52	88.03	Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV...	[more]
Q9SL04	2.4e-51	85.47	Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1	[more]
A2XXR7	7.1e-51	86.32	Autophagy-related protein 8B OS=Oryza sativa subsp. indica OX=39946 GN=ATG8B PE=...	[more]
Q7XPR1	7.1e-51	86.32	Autophagy-related protein 8B OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8B P...	[more]

BLAST of Clc01G04250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEP4	1.3e-58	100.00	Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KR95	1.3e-58	100.00	Autophagy-related protein OS=Cucumis sativus OX=3659 GN=Csa_5G161950 PE=3 SV=1	[more]
A0A1S3ASU6	1.3e-58	100.00	Autophagy-related protein OS=Cucumis melo OX=3656 GN=LOC103482618 PE=3 SV=1	[more]
A0A6J1DKS3	1.8e-57	99.15	Autophagy-related protein OS=Momordica charantia OX=3673 GN=LOC111021994 PE=3 SV...	[more]
A0A6J1I3I5	1.8e-57	99.15	Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111468839 PE=3 SV=1	[more]

BLAST of Clc01G04250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16520.1	1.5e-56	90.68	Ubiquitin-like superfamily protein	[more]
AT4G16520.2	1.5e-56	90.68	Ubiquitin-like superfamily protein	[more]
AT2G05630.1	1.7e-52	85.47	Ubiquitin-like superfamily protein	[more]
AT2G45170.1	1.1e-51	84.21	AUTOPHAGY 8E	[more]
AT2G45170.2	1.1e-51	84.21	AUTOPHAGY 8E	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004241	Autophagy protein Atg8 ubiquitin-like	PFAM	PF02991	Atg8	coord: 95..198 e-value: 1.2E-50 score: 170.0
IPR004241	Autophagy protein Atg8 ubiquitin-like	PANTHER	PTHR10969	MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED	coord: 56..199
None	No IPR available	GENE3D	3.10.20.90		coord: 75..198 e-value: 3.2E-59 score: 200.3
None	No IPR available	PANTHER	PTHR10969:SF77	AUTOPHAGY-RELATED PROTEIN	coord: 56..199
None	No IPR available	CDD	cd16128	Ubl_ATG8	coord: 93..195 e-value: 1.90926E-74 score: 217.714
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 84..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G04250.1	Clc01G04250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006914	autophagy
biological_process	GO:0006995	cellular response to nitrogen starvation
cellular_component	GO:0016020	membrane
cellular_component	GO:0005874	microtubule