Clc01G02545 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G02545
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionBeta-carotene 3-hydroxylase
LocationClcChr01: 2261576 .. 2263962 (+)
RNA-Seq ExpressionClc01G02545
SyntenyClc01G02545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGTTATGTTGTTTTATGTGTTTGGATATGCAAAGAATGTGTGTGAATTTGTTTCTCTTGATCCTAAGTTTATGTGCTCTTGAAACTGATGAGTTCTGCTATTTTGCTCATTAAGATCAGATTGAACCAATAATATCTGCTCCTGTGATATTGAACTGATTGATCTCTGAGTTTGGGGAAGCTTAACTGCTGAAGGTTGTAAAATATATATAGATGCGTGGTGCAGCTGCCTTATTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCTGAAAGGATCATGGGGTATTGTTCCTTCTCTTTGATTGATTTAATCTTTCCATTTCTTTTTGGTAAATTACAATATTGGCTCCTAAGTTTTCAGAGTTGTGTCGTTTTAGTCTTTGTACCGTGAATAGTTTCTAATAAGTTCTAATTTCTAAAATTAAATCCCTGTATTTTAAAATGTTTTGAATAGATCTCATAATCTCAATTTTGCATCTAATAAGTCTAGGCCGTGAATTTGTTCAACACTTGCATGACACATATTTTTAAAGGTCCCTTGGTGGGTTGATTTCAGGTCTAAGCATTGAACAATAAAATTAGTGAAAATAAAGGAAGAGATTTATTGGCTACTAAATTGAAAGTTCAAAGACTTTTTCAACATTTTAAGGTACATTAGGTAAACTTATAATTCAACTATACAAATTTTGCAACCTATTTGAATCTTTTAGTTTTTAAAGTACAGATATTATATAGAGAAAAGTTATTGGACCAAACATATTCTATAATTTGACTGTTTCATTTTTGTTTGTTTCCTTGCCTTGCAATTTCATGACATGAAACAATTGTTGAACTGCAATTTGATTAGGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAGAAGGGGATGTTTTGTATGTTTACAATCTTTTCCATGCCCACGAACAGAATAAATCTTTGTGTGTCTATATGATGTATCCTTTACTTGAAAGATTCTATAACATAATGTAAAAATTTGAGTACATTTGTATACACTTGAGCCCCTAAATGAATAAAAGTTAGATAGCTCTTCAAAAAGCTGTCCAAGAGAAGCTTGAAGAGAATTATACAGATCTTTGACATCCACTTTACCCAACGTTGTTGGGAAACTTTTATCAGCCCTACAGGAGACATAAATTCATGTAACTTTAATGTTTAGTAAGAAGCCCTTGCTCAGGAAGATCTATGGCATAATGTATTAAATTTGACTTACATTCTGGAATTGCTGGATACTTAGCAAGCAATAAAGTCACAAGCTTCATTGTAGCCTGATATTAGTATAGACAAAGCCCCATGAGACCAACAAATTGAACATTTGTTAGTACACACATTTTACTTTGATTTCAATTGAGTAAACAGTGAATGATTTTACTCATTTTTAAGTGTTGAATGATTTGAAACTGTTGGAAATGATGGGTTGTGTACTTACCAAGATTAGATGTCCTGCTTTTACTTGTGGTTCAATTATAATTTGTGCCTTCCTGTGAAAGAGATACATTTGATATAAGGAAGATGTTACTTTTCCAGTACAATTGAAATTTGAAAGTATCAGGTACTGAGTTTATTTGTGGTTAACTGTATAGTTTTTCTTTCTTCATTTCTGATGTCAATGAAGGTGCAACCCTTAGTGAAGGGAATCTTCATGTTCTTCCACTCTGCCAAATGATAATTAGGTTTGTCAATGTTTTAGAATGATAGAGTATGAATTGGAGGGATGATATATATAGAACTACCTAAATGCCAGATTGCTCCTGCCCCGGAAACGCCTCTTTCGTAGACGTTATGAATTCTAAACTTCACATCTGGACCCATGCTATGAGCTAGTTCTTCAAAGAAACTCAGAGCTGCCTGCAGGTAGGTTCAATGGAGACTTGTAAAAACCAATTTCTATTAGACATTATAGCAGTATGAATGAGAACAGATACAGAAATATCTAGTAGCTAATTTTTTACCTTCTTCCCTATAATTGGTTCAATGAACAAGGAGTCTTCAATGAGGCAGCCTTCTGAGATGTAACTGCTCAATTCCTTCAAGTTTTTTTCATTGATGCATTTGTAGAATCTCTCAATCATTTCTGATGGAGAATTTGCACTTGAACCTAGGAAGGAAAAGGAATCATTGTTTAAGCACGATGAGACGAAATGTAGCTTAACATCTGTGGATAATCTGTCGTTCGCTTTCCTCTTCTTGCTGTTGCCATAG

mRNA sequence

ATGGATCGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACTTTTTCTTTCTTCATTTCTGATGTCAATGAAGGTGCAACCCTTAGTGAAGGGAATCTTCATAATCTCTCAATCATTTCTGATGGAGAATTTGCACTTGAACCTAGGAAGGAAAAGGAATCATTGTTTAAGCACGATGAGACGAAATGTAGCTTAACATCTGTGGATAATCTGTCGTTCGCTTTCCTCTTCTTGCTGTTGCCATAG

Coding sequence (CDS)

ATGGATCGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACTTTTTCTTTCTTCATTTCTGATGTCAATGAAGGTGCAACCCTTAGTGAAGGGAATCTTCATAATCTCTCAATCATTTCTGATGGAGAATTTGCACTTGAACCTAGGAAGGAAAAGGAATCATTGTTTAAGCACGATGAGACGAAATGTAGCTTAACATCTGTGGATAATCTGTCGTTCGCTTTCCTCTTCTTGCTGTTGCCATAG

Protein sequence

MDRSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETFSFFISDVNEGATLSEGNLHNLSIISDGEFALEPRKEKESLFKHDETKCSLTSVDNLSFAFLFLLLP
Homology
[Close]
BLAST of Clc01G02545 vs. NCBI nr
Match: KAA0042731.1 (hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.8e-17
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETF 58
          SL S+VQRQGMKNDSEGESVVTKEKADPIAAFS+PPPLPPLLGPLAV SLLET+
Sbjct: 26 SLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKPPPLPPLLGPLAVLSLLETY 79

[Close]
BLAST of Clc01G02545 vs. NCBI nr
Match: KAE8647849.1 (hypothetical protein Csa_000256 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 7  SSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETF 58
          S VQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLET+
Sbjct: 23 SWVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETY 73

[Close]
BLAST of Clc01G02545 vs. NCBI nr
Match: KAF3952198.1 (hypothetical protein CMV_022222 [Castanea mollissima])

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-07
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETFS 59
          ++A+S  ++   N+S  E  VTKEK DPI AFSRPPPLPP+LGPL   SLLET+S
Sbjct: 19 TVATSTPKKQGNNNSGEEGPVTKEKNDPIVAFSRPPPLPPVLGPLVALSLLETWS 73

[Close]
BLAST of Clc01G02545 vs. NCBI nr
Match: KAB2632780.1 (hypothetical protein D8674_029027 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETFS 59
          +LASS  ++   ND+    +VTKEK  P+ AFSRPPPLPP+ GPL + SLLET+S
Sbjct: 26 TLASSTPKKLGNNDNGEGGIVTKEKTQPMVAFSRPPPLPPVFGPLLLLSLLETWS 80

[Close]
BLAST of Clc01G02545 vs. NCBI nr
Match: KZN11958.1 (hypothetical protein DCAR_004614 [Daucus carota subsp. sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 8  SVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETF 58
          SV ++ + NDS GE ++ KEK DPI AFS+PPPLPP++GPL V SLL+++
Sbjct: 27 SVPKKTLNNDS-GEVMIVKEKVDPIVAFSKPPPLPPVIGPLVVLSLLDSY 75

[Close]
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match: A0A0A0KKH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.0e-18
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETF 58
          SL S+VQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLET+
Sbjct: 26 SLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETY 79

[Close]
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match: A0A5A7TME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002300 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETF 58
          SL S+VQRQGMKNDSEGESVVTKEKADPIAAFS+PPPLPPLLGPLAV SLLET+
Sbjct: 26 SLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKPPPLPPLLGPLAVLSLLETY 79

[Close]
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match: A0A166JAA1 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004614 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 8  SVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETF 58
          SV ++ + NDS GE ++ KEK DPI AFS+PPPLPP++GPL V SLL+++
Sbjct: 27 SVPKKTLNNDS-GEVMIVKEKVDPIVAFSKPPPLPPVIGPLVVLSLLDSY 75

[Close]
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match: A0A5N5I573 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_029027 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETFS 59
          +LASS  ++   ND+    +VTKEK  P+ AFSRPPPLPP+ GPL + SLLET+S
Sbjct: 26 TLASSTPKKLGNNDNGEGGIVTKEKTQPMVAFSRPPPLPPVFGPLLLLSLLETWS 80

[Close]
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match: A0A2N9IQZ8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 4  SLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETFS 59
          ++A+S+ ++   N++  E  +TKEK  PI AFSRPPPLPP+LGPL   SLLET+S
Sbjct: 26 TVATSMPKKQENNNTGKEGPITKEKNGPIVAFSRPPPLPPVLGPLVALSLLETWS 80

The following BLAST results are available for this feature:
BLAST of Clc01G02545 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042731.16.8e-1790.74hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa][more]
KAE8647849.11.5e-1696.08hypothetical protein Csa_000256 [Cucumis sativus][more]
KAF3952198.16.4e-0760.00hypothetical protein CMV_022222 [Castanea mollissima][more]
KAB2632780.14.1e-0656.36hypothetical protein D8674_029027 [Pyrus ussuriensis x Pyrus communis][more]
KZN11958.14.1e-0658.00hypothetical protein DCAR_004614 [Daucus carota subsp. sativus][more]
BLAST of Clc01G02545 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKH23.0e-1894.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1[more]
A0A5A7TME53.3e-1790.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A166JAA12.0e-0658.00Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_004614 ... [more]
A0A5N5I5732.0e-0656.36Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A2N9IQZ83.4e-0654.55Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1[more]
BLAST of Clc01G02545 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G02545.1Clc01G02545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane